Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS04670 and UW163_RS04675 are separated by 76 nucleotides UW163_RS04675 and UW163_RS04680 are separated by 65 nucleotides
UW163_RS04670: UW163_RS04670 - ABC transporter ATP-binding protein, at 996,285 to 997,055
_RS04670
UW163_RS04675: UW163_RS04675 - ABC transporter ATP-binding protein, at 997,132 to 997,872
_RS04675
UW163_RS04680: UW163_RS04680 - ABC transporter permease, at 997,938 to 999,158
_RS04680
Position (kb) 997
998 Strain fitness (log2 ratio) -2
-1
0
1 at 996.252 kb on - strand at 996.253 kb on + strand at 996.253 kb on + strand at 996.254 kb on - strand at 996.254 kb on - strand at 996.255 kb on + strand at 996.255 kb on + strand at 996.255 kb on + strand at 996.255 kb on + strand at 996.256 kb on - strand at 996.256 kb on - strand at 996.256 kb on - strand at 996.624 kb on + strand, within UW163_RS04670 at 996.624 kb on + strand, within UW163_RS04670 at 996.624 kb on + strand, within UW163_RS04670 at 996.739 kb on - strand, within UW163_RS04670 at 996.978 kb on + strand, within UW163_RS04670 at 996.979 kb on - strand at 997.017 kb on + strand at 997.017 kb on + strand at 997.017 kb on + strand at 997.017 kb on + strand at 997.017 kb on + strand at 997.018 kb on - strand at 997.018 kb on - strand at 997.018 kb on - strand at 997.018 kb on - strand at 997.174 kb on + strand at 997.519 kb on + strand, within UW163_RS04675 at 997.520 kb on - strand, within UW163_RS04675 at 997.520 kb on - strand, within UW163_RS04675 at 997.780 kb on + strand, within UW163_RS04675 at 997.781 kb on - strand, within UW163_RS04675 at 998.052 kb on + strand at 998.052 kb on + strand at 998.052 kb on + strand at 998.076 kb on + strand, within UW163_RS04680 at 998.373 kb on + strand, within UW163_RS04680 at 998.373 kb on + strand, within UW163_RS04680 at 998.374 kb on - strand, within UW163_RS04680 at 998.392 kb on - strand, within UW163_RS04680 at 998.476 kb on - strand, within UW163_RS04680 at 998.586 kb on + strand, within UW163_RS04680 at 998.788 kb on - strand, within UW163_RS04680
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 996,252 - -0.2 996,253 + -0.0 996,253 + +0.7 996,254 - -0.1 996,254 - +0.2 996,255 + -0.4 996,255 + -0.3 996,255 + -1.0 996,255 + -0.5 996,256 - +0.7 996,256 - +1.2 996,256 - +0.7 996,624 + UW163_RS04670 0.44 -0.3 996,624 + UW163_RS04670 0.44 -0.1 996,624 + UW163_RS04670 0.44 +0.2 996,739 - UW163_RS04670 0.59 +0.1 996,978 + UW163_RS04670 0.90 +0.8 996,979 - +0.1 997,017 + +0.1 997,017 + +0.3 997,017 + +1.3 997,017 + +0.1 997,017 + +0.2 997,018 - +0.1 997,018 - -1.0 997,018 - -0.2 997,018 - +1.3 997,174 + +0.4 997,519 + UW163_RS04675 0.52 +0.5 997,520 - UW163_RS04675 0.52 +0.3 997,520 - UW163_RS04675 0.52 -0.6 997,780 + UW163_RS04675 0.87 +0.0 997,781 - UW163_RS04675 0.88 -0.2 998,052 + -0.2 998,052 + -0.3 998,052 + -0.4 998,076 + UW163_RS04680 0.11 -0.1 998,373 + UW163_RS04680 0.36 +0.0 998,373 + UW163_RS04680 0.36 -0.2 998,374 - UW163_RS04680 0.36 -1.8 998,392 - UW163_RS04680 0.37 +0.4 998,476 - UW163_RS04680 0.44 -0.5 998,586 + UW163_RS04680 0.53 +1.6 998,788 - UW163_RS04680 0.70 -0.7
Or see this region's nucleotide sequence