Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS02890

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS02880 and UW163_RS02885 are separated by 79 nucleotidesUW163_RS02885 and UW163_RS02890 are separated by 14 nucleotidesUW163_RS02890 and UW163_RS02895 are separated by 86 nucleotides UW163_RS02880: UW163_RS02880 - type III pantothenate kinase, at 597,498 to 598,382 _RS02880 UW163_RS02885: UW163_RS02885 - SPOR domain-containing protein, at 598,462 to 599,301 _RS02885 UW163_RS02890: UW163_RS02890 - D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase, at 599,316 to 599,816 _RS02890 UW163_RS02895: UW163_RS02895 - hypothetical protein, at 599,903 to 600,772 _RS02895 Position (kb) 599 600Strain fitness (log2 ratio) -1 0 1at 599.439 kb on + strand, within UW163_RS02890at 599.440 kb on + strand, within UW163_RS02890at 599.459 kb on - strand, within UW163_RS02890at 599.459 kb on - strand, within UW163_RS02890at 599.459 kb on - strand, within UW163_RS02890at 599.672 kb on - strand, within UW163_RS02890

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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599,439 + UW163_RS02890 0.25 +0.8
599,440 + UW163_RS02890 0.25 -1.3
599,459 - UW163_RS02890 0.29 -0.0
599,459 - UW163_RS02890 0.29 +0.0
599,459 - UW163_RS02890 0.29 -1.7
599,672 - UW163_RS02890 0.71 -0.5

Or see this region's nucleotide sequence