Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS01015 and UW163_RS01020 are separated by 641 nucleotides UW163_RS01020 and UW163_RS01025 are separated by 532 nucleotides UW163_RS01025 and UW163_RS01030 are separated by 128 nucleotides
UW163_RS01015: UW163_RS01015 - hypothetical protein, at 203,073 to 203,594
_RS01015
UW163_RS01020: UW163_RS01020 - Flp family type IVb pilin, at 204,236 to 204,421
_RS01020
UW163_RS01025: UW163_RS01025 - Flp family type IVb pilin, at 204,954 to 205,130
_RS01025
UW163_RS01030: UW163_RS01030 - precorrin-2 dehydrogenase, at 205,259 to 205,792
_RS01030
Position (kb) 204
205 Strain fitness (log2 ratio) -1
0
1 at 203.355 kb on + strand, within UW163_RS01015 at 203.355 kb on + strand, within UW163_RS01015 at 203.706 kb on - strand at 203.706 kb on - strand at 203.771 kb on + strand at 204.120 kb on + strand at 204.121 kb on - strand at 204.121 kb on - strand at 204.121 kb on - strand at 204.147 kb on - strand at 204.294 kb on - strand, within UW163_RS01020 at 204.393 kb on + strand, within UW163_RS01020 at 204.393 kb on + strand, within UW163_RS01020 at 204.393 kb on + strand, within UW163_RS01020 at 204.420 kb on - strand at 205.011 kb on + strand, within UW163_RS01025 at 205.011 kb on + strand, within UW163_RS01025 at 205.011 kb on + strand, within UW163_RS01025 at 205.011 kb on + strand, within UW163_RS01025 at 205.012 kb on - strand, within UW163_RS01025 at 205.012 kb on - strand, within UW163_RS01025 at 205.053 kb on + strand, within UW163_RS01025 at 205.053 kb on + strand, within UW163_RS01025 at 205.053 kb on + strand, within UW163_RS01025
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 203,355 + UW163_RS01015 0.54 +0.1 203,355 + UW163_RS01015 0.54 -0.2 203,706 - +0.7 203,706 - +0.0 203,771 + +0.1 204,120 + -0.2 204,121 - -0.5 204,121 - +0.0 204,121 - +0.3 204,147 - +0.5 204,294 - UW163_RS01020 0.31 -0.4 204,393 + UW163_RS01020 0.84 +0.4 204,393 + UW163_RS01020 0.84 +0.1 204,393 + UW163_RS01020 0.84 +0.5 204,420 - -1.2 205,011 + UW163_RS01025 0.32 -0.1 205,011 + UW163_RS01025 0.32 -1.3 205,011 + UW163_RS01025 0.32 +0.6 205,011 + UW163_RS01025 0.32 +0.5 205,012 - UW163_RS01025 0.33 -0.2 205,012 - UW163_RS01025 0.33 -0.5 205,053 + UW163_RS01025 0.56 -0.0 205,053 + UW163_RS01025 0.56 +0.5 205,053 + UW163_RS01025 0.56 -0.6
Or see this region's nucleotide sequence