Experiment: m.b. nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0683 and Echvi_0684 are separated by 24 nucleotides Echvi_0684 and Echvi_0685 are separated by 352 nucleotides Echvi_0685 and Echvi_0686 are separated by 163 nucleotides
Echvi_0683: Echvi_0683 - Putative regulator of cell autolysis, at 770,427 to 772,589
_0683
Echvi_0684: Echvi_0684 - hypothetical protein, at 772,614 to 773,042
_0684
Echvi_0685: Echvi_0685 - Response regulator of the LytR/AlgR family, at 773,395 to 774,165
_0685
Echvi_0686: Echvi_0686 - Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein, at 774,329 to 775,747
_0686
Position (kb) 773
774
775 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 772.535 kb on + strand at 772.549 kb on + strand at 772.549 kb on + strand at 772.549 kb on + strand at 772.550 kb on - strand at 772.553 kb on + strand at 772.553 kb on + strand at 772.553 kb on + strand at 772.553 kb on + strand at 772.553 kb on + strand at 772.553 kb on + strand at 772.554 kb on - strand at 772.554 kb on - strand at 772.554 kb on - strand at 772.554 kb on - strand at 772.554 kb on - strand at 772.587 kb on + strand at 772.587 kb on + strand at 772.609 kb on + strand at 772.609 kb on + strand at 772.610 kb on - strand at 772.641 kb on - strand at 772.664 kb on + strand, within Echvi_0684 at 772.664 kb on + strand, within Echvi_0684 at 772.708 kb on + strand, within Echvi_0684 at 772.740 kb on + strand, within Echvi_0684 at 772.740 kb on + strand, within Echvi_0684 at 772.741 kb on - strand, within Echvi_0684 at 772.758 kb on - strand, within Echvi_0684 at 772.784 kb on + strand, within Echvi_0684 at 772.784 kb on + strand at 772.785 kb on - strand, within Echvi_0684 at 772.789 kb on + strand, within Echvi_0684 at 772.804 kb on + strand, within Echvi_0684 at 772.804 kb on + strand, within Echvi_0684 at 772.805 kb on - strand, within Echvi_0684 at 772.922 kb on - strand, within Echvi_0684 at 772.982 kb on - strand, within Echvi_0684 at 773.017 kb on + strand at 773.018 kb on - strand at 773.018 kb on - strand at 773.042 kb on + strand at 773.043 kb on - strand at 773.049 kb on - strand at 773.055 kb on + strand at 773.056 kb on - strand at 773.086 kb on + strand at 773.091 kb on - strand at 773.091 kb on - strand at 773.169 kb on - strand at 773.190 kb on + strand at 773.190 kb on + strand at 773.190 kb on + strand at 773.212 kb on + strand at 773.260 kb on - strand at 773.278 kb on - strand at 773.281 kb on - strand at 773.281 kb on - strand at 773.283 kb on + strand at 773.319 kb on + strand at 773.325 kb on + strand at 773.325 kb on + strand at 773.329 kb on + strand at 773.338 kb on - strand at 773.349 kb on + strand at 773.349 kb on + strand at 773.351 kb on + strand at 773.354 kb on + strand at 773.354 kb on + strand at 773.360 kb on - strand at 773.385 kb on + strand at 773.385 kb on + strand at 773.386 kb on - strand at 773.387 kb on + strand at 773.402 kb on + strand at 773.444 kb on + strand at 773.445 kb on - strand at 773.453 kb on + strand at 773.474 kb on + strand, within Echvi_0685 at 773.526 kb on + strand, within Echvi_0685 at 773.526 kb on + strand, within Echvi_0685 at 773.526 kb on + strand, within Echvi_0685 at 773.527 kb on - strand, within Echvi_0685 at 773.558 kb on + strand, within Echvi_0685 at 773.559 kb on - strand, within Echvi_0685 at 773.611 kb on + strand, within Echvi_0685 at 773.625 kb on - strand, within Echvi_0685 at 773.668 kb on + strand, within Echvi_0685 at 773.668 kb on + strand, within Echvi_0685 at 773.812 kb on - strand, within Echvi_0685 at 773.814 kb on + strand, within Echvi_0685 at 773.814 kb on + strand, within Echvi_0685 at 773.862 kb on + strand, within Echvi_0685 at 773.884 kb on + strand, within Echvi_0685 at 773.884 kb on + strand, within Echvi_0685 at 773.906 kb on - strand, within Echvi_0685 at 773.921 kb on + strand, within Echvi_0685 at 773.921 kb on + strand, within Echvi_0685 at 773.943 kb on - strand, within Echvi_0685 at 774.032 kb on - strand, within Echvi_0685 at 774.092 kb on + strand at 774.093 kb on - strand at 774.096 kb on + strand at 774.097 kb on - strand at 774.097 kb on - strand at 774.098 kb on + strand at 774.099 kb on - strand at 774.099 kb on - strand at 774.126 kb on + strand at 774.164 kb on - strand at 774.171 kb on + strand at 774.214 kb on + strand at 774.215 kb on - strand at 774.215 kb on - strand at 774.215 kb on - strand at 774.215 kb on - strand at 774.215 kb on - strand at 774.216 kb on + strand at 774.232 kb on + strand at 774.233 kb on - strand at 774.241 kb on - strand at 774.241 kb on - strand at 774.241 kb on - strand at 774.251 kb on + strand at 774.252 kb on - strand at 774.260 kb on + strand at 774.260 kb on + strand at 774.261 kb on - strand at 774.263 kb on + strand at 774.264 kb on - strand at 774.271 kb on + strand at 774.271 kb on + strand at 774.271 kb on + strand at 774.272 kb on - strand at 774.324 kb on + strand at 774.328 kb on + strand at 774.328 kb on + strand at 774.329 kb on - strand at 774.329 kb on - strand at 774.334 kb on - strand at 774.334 kb on - strand at 774.491 kb on + strand, within Echvi_0686 at 774.491 kb on + strand, within Echvi_0686 at 774.491 kb on + strand, within Echvi_0686 at 774.492 kb on - strand, within Echvi_0686 at 774.492 kb on - strand, within Echvi_0686 at 774.494 kb on + strand, within Echvi_0686 at 774.494 kb on + strand, within Echvi_0686 at 774.494 kb on + strand, within Echvi_0686 at 774.495 kb on - strand, within Echvi_0686 at 774.495 kb on - strand, within Echvi_0686 at 774.495 kb on - strand, within Echvi_0686 at 774.496 kb on + strand, within Echvi_0686 at 774.496 kb on + strand, within Echvi_0686 at 774.496 kb on + strand, within Echvi_0686 at 774.500 kb on + strand, within Echvi_0686 at 774.500 kb on + strand, within Echvi_0686 at 774.501 kb on - strand, within Echvi_0686 at 774.501 kb on - strand, within Echvi_0686 at 774.501 kb on - strand, within Echvi_0686 at 774.522 kb on - strand, within Echvi_0686 at 774.564 kb on + strand, within Echvi_0686 at 774.564 kb on + strand, within Echvi_0686 at 774.564 kb on + strand, within Echvi_0686 at 774.564 kb on + strand, within Echvi_0686 at 774.635 kb on - strand, within Echvi_0686 at 774.705 kb on + strand, within Echvi_0686 at 774.705 kb on + strand, within Echvi_0686 at 774.706 kb on - strand, within Echvi_0686 at 774.780 kb on + strand, within Echvi_0686 at 774.803 kb on + strand at 774.803 kb on + strand, within Echvi_0686 at 774.803 kb on + strand, within Echvi_0686 at 774.804 kb on - strand, within Echvi_0686 at 774.804 kb on - strand, within Echvi_0686 at 774.804 kb on - strand, within Echvi_0686 at 774.804 kb on - strand, within Echvi_0686 at 774.805 kb on + strand, within Echvi_0686 at 774.806 kb on - strand, within Echvi_0686 at 774.848 kb on - strand, within Echvi_0686 at 774.848 kb on - strand, within Echvi_0686 at 774.886 kb on - strand, within Echvi_0686 at 774.911 kb on - strand, within Echvi_0686 at 774.959 kb on + strand, within Echvi_0686 at 774.959 kb on + strand, within Echvi_0686 at 774.959 kb on + strand, within Echvi_0686 at 774.960 kb on - strand, within Echvi_0686 at 774.960 kb on - strand, within Echvi_0686 at 774.960 kb on - strand, within Echvi_0686 at 774.960 kb on - strand, within Echvi_0686 at 774.960 kb on - strand, within Echvi_0686 at 774.963 kb on - strand, within Echvi_0686 at 774.963 kb on - strand, within Echvi_0686 at 775.112 kb on + strand, within Echvi_0686 at 775.136 kb on + strand, within Echvi_0686
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 10 mM remove 772,535 + -1.1 772,549 + -1.1 772,549 + +0.1 772,549 + -0.5 772,550 - +0.9 772,553 + -1.0 772,553 + +0.1 772,553 + -0.3 772,553 + -0.0 772,553 + -0.0 772,553 + +0.3 772,554 - -1.8 772,554 - +0.1 772,554 - +1.5 772,554 - -1.2 772,554 - -1.0 772,587 + -0.2 772,587 + +0.0 772,609 + -0.6 772,609 + -0.4 772,610 - -0.6 772,641 - +0.2 772,664 + Echvi_0684 0.12 +1.4 772,664 + Echvi_0684 0.12 +0.3 772,708 + Echvi_0684 0.22 +0.9 772,740 + Echvi_0684 0.29 +0.2 772,740 + Echvi_0684 0.29 +0.3 772,741 - Echvi_0684 0.30 -0.8 772,758 - Echvi_0684 0.34 +0.3 772,784 + Echvi_0684 0.40 +0.3 772,784 + +1.0 772,785 - Echvi_0684 0.40 -3.0 772,789 + Echvi_0684 0.41 -0.2 772,804 + Echvi_0684 0.44 -0.1 772,804 + Echvi_0684 0.44 +0.6 772,805 - Echvi_0684 0.45 +0.5 772,922 - Echvi_0684 0.72 -2.0 772,982 - Echvi_0684 0.86 -2.2 773,017 + -2.2 773,018 - -0.4 773,018 - +0.2 773,042 + +0.6 773,043 - -0.5 773,049 - -1.2 773,055 + +2.1 773,056 - -0.2 773,086 + +0.0 773,091 - -0.1 773,091 - +0.6 773,169 - -2.2 773,190 + -0.6 773,190 + +2.4 773,190 + +0.1 773,212 + -0.5 773,260 - -1.8 773,278 - +1.2 773,281 - +2.1 773,281 - -0.4 773,283 + +0.5 773,319 + +0.2 773,325 + -0.2 773,325 + +1.2 773,329 + -0.1 773,338 - +1.3 773,349 + +0.0 773,349 + -1.5 773,351 + +0.7 773,354 + +2.0 773,354 + +0.8 773,360 - +0.1 773,385 + +0.1 773,385 + +0.2 773,386 - -0.2 773,387 + -1.3 773,402 + +0.2 773,444 + -0.0 773,445 - +0.0 773,453 + +0.1 773,474 + Echvi_0685 0.10 +0.3 773,526 + Echvi_0685 0.17 +1.1 773,526 + Echvi_0685 0.17 -0.6 773,526 + Echvi_0685 0.17 -1.1 773,527 - Echvi_0685 0.17 +0.6 773,558 + Echvi_0685 0.21 +0.4 773,559 - Echvi_0685 0.21 -0.2 773,611 + Echvi_0685 0.28 +1.3 773,625 - Echvi_0685 0.30 +0.2 773,668 + Echvi_0685 0.35 +0.5 773,668 + Echvi_0685 0.35 -0.6 773,812 - Echvi_0685 0.54 -0.1 773,814 + Echvi_0685 0.54 +0.0 773,814 + Echvi_0685 0.54 -0.2 773,862 + Echvi_0685 0.61 -0.4 773,884 + Echvi_0685 0.63 -0.3 773,884 + Echvi_0685 0.63 -1.7 773,906 - Echvi_0685 0.66 -2.7 773,921 + Echvi_0685 0.68 -0.1 773,921 + Echvi_0685 0.68 -0.6 773,943 - Echvi_0685 0.71 -1.5 774,032 - Echvi_0685 0.83 -1.5 774,092 + +1.1 774,093 - +0.7 774,096 + -0.0 774,097 - -1.7 774,097 - -0.4 774,098 + +0.3 774,099 - +0.7 774,099 - -0.2 774,126 + -0.5 774,164 - -0.4 774,171 + +0.2 774,214 + +0.1 774,215 - -0.4 774,215 - +0.8 774,215 - -1.1 774,215 - +0.3 774,215 - -0.7 774,216 + +0.6 774,232 + -2.4 774,233 - -1.5 774,241 - -1.1 774,241 - +0.2 774,241 - -0.0 774,251 + +0.9 774,252 - +0.1 774,260 + +0.2 774,260 + +0.2 774,261 - +0.9 774,263 + +1.0 774,264 - -0.1 774,271 + +3.6 774,271 + -3.4 774,271 + -0.1 774,272 - -0.0 774,324 + +0.5 774,328 + -0.6 774,328 + -0.5 774,329 - +1.1 774,329 - -0.4 774,334 - +0.5 774,334 - +2.6 774,491 + Echvi_0686 0.11 -2.0 774,491 + Echvi_0686 0.11 -1.5 774,491 + Echvi_0686 0.11 -0.9 774,492 - Echvi_0686 0.11 -0.6 774,492 - Echvi_0686 0.11 -0.2 774,494 + Echvi_0686 0.12 -3.4 774,494 + Echvi_0686 0.12 +0.4 774,494 + Echvi_0686 0.12 +0.8 774,495 - Echvi_0686 0.12 +2.0 774,495 - Echvi_0686 0.12 +0.4 774,495 - Echvi_0686 0.12 +0.1 774,496 + Echvi_0686 0.12 +1.0 774,496 + Echvi_0686 0.12 -0.2 774,496 + Echvi_0686 0.12 +0.3 774,500 + Echvi_0686 0.12 -0.2 774,500 + Echvi_0686 0.12 -1.3 774,501 - Echvi_0686 0.12 +1.8 774,501 - Echvi_0686 0.12 +0.3 774,501 - Echvi_0686 0.12 +1.2 774,522 - Echvi_0686 0.14 +1.0 774,564 + Echvi_0686 0.17 -2.3 774,564 + Echvi_0686 0.17 -0.0 774,564 + Echvi_0686 0.17 -0.3 774,564 + Echvi_0686 0.17 -0.2 774,635 - Echvi_0686 0.22 -1.3 774,705 + Echvi_0686 0.26 -0.6 774,705 + Echvi_0686 0.26 +0.5 774,706 - Echvi_0686 0.27 +0.8 774,780 + Echvi_0686 0.32 -0.2 774,803 + +1.8 774,803 + Echvi_0686 0.33 -0.5 774,803 + Echvi_0686 0.33 -0.8 774,804 - Echvi_0686 0.33 +0.1 774,804 - Echvi_0686 0.33 -2.2 774,804 - Echvi_0686 0.33 -1.1 774,804 - Echvi_0686 0.33 -1.1 774,805 + Echvi_0686 0.34 -0.8 774,806 - Echvi_0686 0.34 +0.4 774,848 - Echvi_0686 0.37 +0.9 774,848 - Echvi_0686 0.37 -1.6 774,886 - Echvi_0686 0.39 -0.1 774,911 - Echvi_0686 0.41 +0.3 774,959 + Echvi_0686 0.44 +1.7 774,959 + Echvi_0686 0.44 -0.2 774,959 + Echvi_0686 0.44 -0.2 774,960 - Echvi_0686 0.44 -2.8 774,960 - Echvi_0686 0.44 +0.1 774,960 - Echvi_0686 0.44 +0.7 774,960 - Echvi_0686 0.44 -2.4 774,960 - Echvi_0686 0.44 +0.5 774,963 - Echvi_0686 0.45 -0.0 774,963 - Echvi_0686 0.45 -0.9 775,112 + Echvi_0686 0.55 -1.0 775,136 + Echvi_0686 0.57 -0.0
Or see this region's nucleotide sequence