Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20310

Experiment: m.b. Chlorite 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20300 and CA264_20305 are separated by 405 nucleotidesCA264_20305 and CA264_20310 are separated by 66 nucleotidesCA264_20310 and CA264_20315 are separated by 236 nucleotides CA264_20300: CA264_20300 - hypothetical protein, at 4,679,076 to 4,679,801 _20300 CA264_20305: CA264_20305 - tRNA-Arg, at 4,680,207 to 4,680,280 _20305 CA264_20310: CA264_20310 - TVP38/TMEM64 family protein, at 4,680,347 to 4,681,069 _20310 CA264_20315: CA264_20315 - cystathionine gamma-synthase, at 4,681,306 to 4,682,445 _20315 Position (kb) 4680 4681 4682Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 4679.813 kb on + strandat 4679.817 kb on + strandat 4679.823 kb on - strandat 4679.907 kb on + strandat 4679.907 kb on + strandat 4679.910 kb on + strandat 4679.916 kb on + strandat 4679.916 kb on + strandat 4679.917 kb on - strandat 4679.917 kb on - strandat 4679.938 kb on - strandat 4679.938 kb on - strandat 4679.965 kb on + strandat 4680.018 kb on + strandat 4680.123 kb on + strandat 4680.124 kb on - strandat 4680.677 kb on + strand, within CA264_20310at 4680.678 kb on - strand, within CA264_20310at 4680.763 kb on - strand, within CA264_20310at 4680.786 kb on + strand, within CA264_20310at 4680.854 kb on - strand, within CA264_20310at 4680.890 kb on - strand, within CA264_20310at 4680.946 kb on - strand, within CA264_20310at 4680.957 kb on - strand, within CA264_20310at 4680.959 kb on + strand, within CA264_20310at 4680.959 kb on + strand, within CA264_20310at 4680.960 kb on - strand, within CA264_20310at 4680.960 kb on - strand, within CA264_20310at 4681.140 kb on - strandat 4681.151 kb on + strandat 4681.205 kb on + strandat 4681.243 kb on + strandat 4681.244 kb on - strandat 4681.244 kb on - strandat 4681.245 kb on + strandat 4681.245 kb on + strandat 4681.246 kb on - strandat 4681.288 kb on - strandat 4681.288 kb on - strandat 4681.288 kb on - strandat 4681.292 kb on - strandat 4681.294 kb on - strandat 4681.327 kb on - strandat 4681.377 kb on + strandat 4681.377 kb on + strandat 4681.381 kb on + strandat 4681.382 kb on - strandat 4681.396 kb on + strandat 4681.397 kb on - strandat 4681.397 kb on - strandat 4681.429 kb on + strand, within CA264_20315at 4681.598 kb on - strand, within CA264_20315at 4681.635 kb on + strand, within CA264_20315at 4681.635 kb on + strand, within CA264_20315at 4681.636 kb on - strand, within CA264_20315at 4681.639 kb on + strand, within CA264_20315at 4681.640 kb on - strand, within CA264_20315at 4681.647 kb on + strand, within CA264_20315at 4681.785 kb on + strand, within CA264_20315at 4681.786 kb on - strand, within CA264_20315at 4681.835 kb on - strand, within CA264_20315at 4681.891 kb on + strand, within CA264_20315at 4681.913 kb on + strand, within CA264_20315at 4681.914 kb on - strand, within CA264_20315

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM
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4,679,813 + -1.8
4,679,817 + -1.2
4,679,823 - +0.8
4,679,907 + -0.9
4,679,907 + -0.9
4,679,910 + -0.7
4,679,916 + -1.4
4,679,916 + +0.2
4,679,917 - -0.1
4,679,917 - +2.5
4,679,938 - -1.3
4,679,938 - -0.1
4,679,965 + -1.6
4,680,018 + -1.2
4,680,123 + -0.5
4,680,124 - +0.2
4,680,677 + CA264_20310 0.46 -3.3
4,680,678 - CA264_20310 0.46 -2.8
4,680,763 - CA264_20310 0.58 -4.8
4,680,786 + CA264_20310 0.61 -3.1
4,680,854 - CA264_20310 0.70 -1.5
4,680,890 - CA264_20310 0.75 -1.9
4,680,946 - CA264_20310 0.83 -3.6
4,680,957 - CA264_20310 0.84 -3.7
4,680,959 + CA264_20310 0.85 +0.3
4,680,959 + CA264_20310 0.85 -0.1
4,680,960 - CA264_20310 0.85 -2.4
4,680,960 - CA264_20310 0.85 -1.8
4,681,140 - +0.2
4,681,151 + +0.2
4,681,205 + +0.1
4,681,243 + -0.8
4,681,244 - -0.4
4,681,244 - -0.1
4,681,245 + +0.8
4,681,245 + +0.0
4,681,246 - -0.1
4,681,288 - +0.1
4,681,288 - +0.2
4,681,288 - -0.1
4,681,292 - +0.3
4,681,294 - +0.1
4,681,327 - +0.5
4,681,377 + +0.8
4,681,377 + -1.4
4,681,381 + -0.3
4,681,382 - -0.0
4,681,396 + +0.4
4,681,397 - -1.5
4,681,397 - -1.2
4,681,429 + CA264_20315 0.11 +0.0
4,681,598 - CA264_20315 0.26 -0.4
4,681,635 + CA264_20315 0.29 -1.3
4,681,635 + CA264_20315 0.29 +0.0
4,681,636 - CA264_20315 0.29 -0.2
4,681,639 + CA264_20315 0.29 +0.2
4,681,640 - CA264_20315 0.29 +0.7
4,681,647 + CA264_20315 0.30 -0.3
4,681,785 + CA264_20315 0.42 +0.9
4,681,786 - CA264_20315 0.42 -0.2
4,681,835 - CA264_20315 0.46 +0.2
4,681,891 + CA264_20315 0.51 -0.4
4,681,913 + CA264_20315 0.53 -0.4
4,681,914 - CA264_20315 0.53 +0.8

Or see this region's nucleotide sequence