Experiment: m.b. Chlorite 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_19625 and CA264_19630 are separated by 133 nucleotides CA264_19630 and CA264_19635 are separated by 39 nucleotides CA264_19635 and CA264_19640 are separated by 62 nucleotides CA264_19640 and CA264_19645 are separated by 78 nucleotides
CA264_19625: CA264_19625 - DNA mismatch repair protein MutS, at 4,533,101 to 4,534,915
_19625
CA264_19630: CA264_19630 - hypothetical protein, at 4,535,049 to 4,535,291
_19630
CA264_19635: CA264_19635 - hypothetical protein, at 4,535,331 to 4,536,194
_19635
CA264_19640: CA264_19640 - TraB/GumN family protein, at 4,536,257 to 4,536,982
_19640
CA264_19645: CA264_19645 - IS256 family transposase, at 4,537,061 to 4,538,284
_19645
Position (kb)
4535
4536
4537 Strain fitness (log2 ratio)
-2
-1
0
1 at 4534.381 kb on + strand, within CA264_19625 at 4534.393 kb on + strand, within CA264_19625 at 4534.480 kb on + strand, within CA264_19625 at 4534.481 kb on - strand, within CA264_19625 at 4534.481 kb on - strand, within CA264_19625 at 4534.506 kb on - strand, within CA264_19625 at 4534.506 kb on - strand, within CA264_19625 at 4534.594 kb on + strand, within CA264_19625 at 4534.619 kb on + strand, within CA264_19625 at 4534.620 kb on - strand, within CA264_19625 at 4534.831 kb on + strand at 4534.832 kb on - strand at 4534.832 kb on - strand at 4535.025 kb on + strand at 4535.043 kb on - strand at 4535.048 kb on + strand at 4535.049 kb on - strand at 4535.057 kb on - strand at 4535.068 kb on + strand at 4535.069 kb on - strand at 4535.115 kb on + strand, within CA264_19630 at 4535.118 kb on - strand, within CA264_19630 at 4535.206 kb on + strand, within CA264_19630 at 4535.207 kb on - strand, within CA264_19630 at 4535.266 kb on + strand, within CA264_19630 at 4535.270 kb on + strand at 4535.271 kb on - strand at 4535.323 kb on - strand at 4535.323 kb on - strand at 4535.325 kb on + strand at 4535.326 kb on - strand at 4535.326 kb on - strand at 4535.339 kb on - strand at 4535.343 kb on - strand at 4535.343 kb on - strand at 4535.346 kb on + strand at 4535.347 kb on - strand at 4535.350 kb on + strand at 4535.351 kb on - strand at 4535.363 kb on + strand at 4535.372 kb on + strand at 4535.393 kb on - strand at 4535.393 kb on - strand at 4535.433 kb on - strand, within CA264_19635 at 4535.480 kb on - strand, within CA264_19635 at 4535.490 kb on + strand, within CA264_19635 at 4535.490 kb on + strand, within CA264_19635 at 4535.491 kb on - strand, within CA264_19635 at 4535.519 kb on + strand, within CA264_19635 at 4535.530 kb on + strand, within CA264_19635 at 4535.606 kb on + strand, within CA264_19635 at 4535.607 kb on - strand, within CA264_19635 at 4535.613 kb on - strand, within CA264_19635 at 4535.613 kb on - strand, within CA264_19635 at 4535.756 kb on + strand, within CA264_19635 at 4535.785 kb on + strand, within CA264_19635 at 4535.785 kb on + strand, within CA264_19635 at 4535.808 kb on - strand, within CA264_19635 at 4535.820 kb on + strand, within CA264_19635 at 4535.891 kb on + strand, within CA264_19635 at 4535.892 kb on - strand, within CA264_19635 at 4535.906 kb on + strand, within CA264_19635 at 4535.906 kb on + strand, within CA264_19635 at 4535.907 kb on - strand, within CA264_19635 at 4535.907 kb on - strand, within CA264_19635 at 4535.954 kb on + strand, within CA264_19635 at 4535.955 kb on - strand, within CA264_19635 at 4535.958 kb on + strand, within CA264_19635 at 4535.959 kb on - strand, within CA264_19635 at 4536.000 kb on + strand, within CA264_19635 at 4536.000 kb on + strand, within CA264_19635 at 4536.000 kb on + strand, within CA264_19635 at 4536.001 kb on - strand, within CA264_19635 at 4536.026 kb on + strand, within CA264_19635 at 4536.027 kb on - strand, within CA264_19635 at 4536.027 kb on - strand, within CA264_19635 at 4536.041 kb on - strand, within CA264_19635 at 4536.202 kb on + strand at 4536.213 kb on - strand at 4536.213 kb on - strand at 4536.247 kb on - strand at 4536.389 kb on - strand, within CA264_19640 at 4536.389 kb on - strand, within CA264_19640 at 4536.420 kb on + strand, within CA264_19640 at 4536.420 kb on + strand, within CA264_19640 at 4536.421 kb on - strand, within CA264_19640 at 4536.423 kb on + strand, within CA264_19640 at 4536.423 kb on + strand, within CA264_19640 at 4536.524 kb on - strand, within CA264_19640 at 4536.524 kb on - strand, within CA264_19640 at 4536.541 kb on - strand, within CA264_19640 at 4536.623 kb on - strand, within CA264_19640 at 4536.624 kb on + strand, within CA264_19640 at 4536.625 kb on - strand, within CA264_19640 at 4536.658 kb on - strand, within CA264_19640 at 4536.697 kb on + strand, within CA264_19640 at 4536.698 kb on - strand, within CA264_19640 at 4536.701 kb on - strand, within CA264_19640 at 4536.717 kb on + strand, within CA264_19640 at 4536.736 kb on - strand, within CA264_19640 at 4536.747 kb on - strand, within CA264_19640 at 4536.767 kb on + strand, within CA264_19640 at 4536.767 kb on + strand, within CA264_19640 at 4536.787 kb on - strand, within CA264_19640 at 4536.791 kb on - strand, within CA264_19640 at 4536.819 kb on + strand, within CA264_19640 at 4536.822 kb on + strand, within CA264_19640 at 4536.822 kb on + strand, within CA264_19640 at 4536.849 kb on + strand, within CA264_19640 at 4536.931 kb on - strand at 4536.956 kb on + strand at 4536.959 kb on - strand at 4536.959 kb on - strand at 4536.978 kb on + strand at 4536.980 kb on + strand at 4537.033 kb on + strand at 4537.037 kb on - strand at 4537.039 kb on + strand at 4537.040 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM remove 4,534,381 + CA264_19625 0.71 -0.9 4,534,393 + CA264_19625 0.71 -1.4 4,534,480 + CA264_19625 0.76 -1.9 4,534,481 - CA264_19625 0.76 -0.6 4,534,481 - CA264_19625 0.76 -1.4 4,534,506 - CA264_19625 0.77 -0.4 4,534,506 - CA264_19625 0.77 -0.8 4,534,594 + CA264_19625 0.82 -1.7 4,534,619 + CA264_19625 0.84 -0.4 4,534,620 - CA264_19625 0.84 -1.1 4,534,831 + -1.0 4,534,832 - -0.7 4,534,832 - +0.1 4,535,025 + -1.1 4,535,043 - -0.4 4,535,048 + -0.8 4,535,049 - -0.7 4,535,057 - +0.2 4,535,068 + -1.5 4,535,069 - -0.6 4,535,115 + CA264_19630 0.27 +0.2 4,535,118 - CA264_19630 0.28 -0.0 4,535,206 + CA264_19630 0.65 +0.1 4,535,207 - CA264_19630 0.65 -0.0 4,535,266 + CA264_19630 0.89 +0.6 4,535,270 + -0.1 4,535,271 - +0.1 4,535,323 - -0.6 4,535,323 - -1.0 4,535,325 + +0.2 4,535,326 - +0.3 4,535,326 - -0.3 4,535,339 - -0.0 4,535,343 - -0.3 4,535,343 - -0.4 4,535,346 + +0.1 4,535,347 - -0.9 4,535,350 + -0.5 4,535,351 - +1.0 4,535,363 + -1.4 4,535,372 + -1.1 4,535,393 - -1.7 4,535,393 - +0.0 4,535,433 - CA264_19635 0.12 +1.2 4,535,480 - CA264_19635 0.17 +0.3 4,535,490 + CA264_19635 0.18 -0.6 4,535,490 + CA264_19635 0.18 -0.0 4,535,491 - CA264_19635 0.19 -0.5 4,535,519 + CA264_19635 0.22 +0.2 4,535,530 + CA264_19635 0.23 -0.6 4,535,606 + CA264_19635 0.32 +0.2 4,535,607 - CA264_19635 0.32 -0.1 4,535,613 - CA264_19635 0.33 -0.6 4,535,613 - CA264_19635 0.33 -0.0 4,535,756 + CA264_19635 0.49 +0.0 4,535,785 + CA264_19635 0.53 -2.6 4,535,785 + CA264_19635 0.53 +0.1 4,535,808 - CA264_19635 0.55 +0.1 4,535,820 + CA264_19635 0.57 +0.2 4,535,891 + CA264_19635 0.65 +0.4 4,535,892 - CA264_19635 0.65 +1.5 4,535,906 + CA264_19635 0.67 +0.5 4,535,906 + CA264_19635 0.67 -0.6 4,535,907 - CA264_19635 0.67 +1.4 4,535,907 - CA264_19635 0.67 -1.5 4,535,954 + CA264_19635 0.72 +0.1 4,535,955 - CA264_19635 0.72 -0.1 4,535,958 + CA264_19635 0.73 +0.5 4,535,959 - CA264_19635 0.73 -0.5 4,536,000 + CA264_19635 0.77 -0.2 4,536,000 + CA264_19635 0.77 -0.1 4,536,000 + CA264_19635 0.77 +0.2 4,536,001 - CA264_19635 0.78 +0.3 4,536,026 + CA264_19635 0.80 -0.0 4,536,027 - CA264_19635 0.81 -1.0 4,536,027 - CA264_19635 0.81 -0.3 4,536,041 - CA264_19635 0.82 -1.1 4,536,202 + -0.6 4,536,213 - +0.8 4,536,213 - -0.0 4,536,247 - +0.1 4,536,389 - CA264_19640 0.18 +0.1 4,536,389 - CA264_19640 0.18 +0.5 4,536,420 + CA264_19640 0.22 -0.3 4,536,420 + CA264_19640 0.22 +0.4 4,536,421 - CA264_19640 0.23 +0.1 4,536,423 + CA264_19640 0.23 -0.2 4,536,423 + CA264_19640 0.23 -0.4 4,536,524 - CA264_19640 0.37 -0.0 4,536,524 - CA264_19640 0.37 -0.1 4,536,541 - CA264_19640 0.39 +0.2 4,536,623 - CA264_19640 0.50 +0.4 4,536,624 + CA264_19640 0.51 +0.1 4,536,625 - CA264_19640 0.51 -0.9 4,536,658 - CA264_19640 0.55 -0.0 4,536,697 + CA264_19640 0.61 +0.4 4,536,698 - CA264_19640 0.61 -2.3 4,536,701 - CA264_19640 0.61 -0.4 4,536,717 + CA264_19640 0.63 +0.3 4,536,736 - CA264_19640 0.66 -0.2 4,536,747 - CA264_19640 0.67 +0.6 4,536,767 + CA264_19640 0.70 -0.5 4,536,767 + CA264_19640 0.70 -0.4 4,536,787 - CA264_19640 0.73 -0.3 4,536,791 - CA264_19640 0.74 +1.7 4,536,819 + CA264_19640 0.77 -0.6 4,536,822 + CA264_19640 0.78 -0.1 4,536,822 + CA264_19640 0.78 +0.4 4,536,849 + CA264_19640 0.82 +0.1 4,536,931 - -0.7 4,536,956 + +0.0 4,536,959 - +0.4 4,536,959 - -1.3 4,536,978 + -1.6 4,536,980 + +1.4 4,537,033 + -0.6 4,537,037 - -1.8 4,537,039 + +0.4 4,537,040 - -0.5
Or see this region's nucleotide sequence