Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16605

Experiment: m.b. Chlorite 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16600 and CA264_16605 are separated by 332 nucleotidesCA264_16605 and CA264_16610 are separated by 12 nucleotides CA264_16600: CA264_16600 - alpha/beta hydrolase, at 3,857,494 to 3,858,300 _16600 CA264_16605: CA264_16605 - hypothetical protein, at 3,858,633 to 3,860,438 _16605 CA264_16610: CA264_16610 - hypothetical protein, at 3,860,451 to 3,860,951 _16610 Position (kb) 3858 3859 3860 3861Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3857.638 kb on + strand, within CA264_16600at 3857.638 kb on + strand, within CA264_16600at 3857.638 kb on + strand, within CA264_16600at 3857.640 kb on + strand, within CA264_16600at 3857.765 kb on + strand, within CA264_16600at 3857.766 kb on - strand, within CA264_16600at 3857.771 kb on + strand, within CA264_16600at 3857.818 kb on + strand, within CA264_16600at 3857.867 kb on + strand, within CA264_16600at 3857.868 kb on - strand, within CA264_16600at 3857.876 kb on - strand, within CA264_16600at 3857.913 kb on - strand, within CA264_16600at 3857.974 kb on + strand, within CA264_16600at 3858.015 kb on + strand, within CA264_16600at 3858.016 kb on - strand, within CA264_16600at 3858.089 kb on - strand, within CA264_16600at 3858.207 kb on - strand, within CA264_16600at 3858.213 kb on + strand, within CA264_16600at 3858.213 kb on + strand, within CA264_16600at 3858.214 kb on - strand, within CA264_16600at 3858.231 kb on + strandat 3858.298 kb on + strandat 3858.307 kb on + strandat 3858.321 kb on + strandat 3858.327 kb on + strandat 3858.393 kb on + strandat 3858.403 kb on - strandat 3858.403 kb on - strandat 3858.408 kb on - strandat 3858.436 kb on + strandat 3858.535 kb on + strandat 3858.631 kb on - strandat 3858.631 kb on - strandat 3858.694 kb on - strandat 3858.694 kb on - strandat 3858.694 kb on - strandat 3858.696 kb on + strandat 3858.718 kb on + strandat 3858.723 kb on + strandat 3858.724 kb on - strandat 3858.871 kb on + strand, within CA264_16605at 3858.872 kb on - strand, within CA264_16605at 3858.872 kb on - strand, within CA264_16605at 3858.948 kb on + strand, within CA264_16605at 3858.948 kb on + strand, within CA264_16605at 3858.948 kb on + strand, within CA264_16605at 3858.949 kb on - strand, within CA264_16605at 3858.950 kb on + strand, within CA264_16605at 3858.950 kb on + strand, within CA264_16605at 3858.951 kb on - strand, within CA264_16605at 3858.956 kb on + strand, within CA264_16605at 3858.967 kb on - strandat 3858.986 kb on + strand, within CA264_16605at 3858.987 kb on - strand, within CA264_16605at 3858.987 kb on - strand, within CA264_16605at 3859.013 kb on + strand, within CA264_16605at 3859.032 kb on + strand, within CA264_16605at 3859.032 kb on + strand, within CA264_16605at 3859.032 kb on + strand, within CA264_16605at 3859.033 kb on - strand, within CA264_16605at 3859.035 kb on - strand, within CA264_16605at 3859.035 kb on - strand, within CA264_16605at 3859.037 kb on + strand, within CA264_16605at 3859.038 kb on - strand, within CA264_16605at 3859.117 kb on - strand, within CA264_16605at 3859.119 kb on + strand, within CA264_16605at 3859.119 kb on + strand, within CA264_16605at 3859.120 kb on - strand, within CA264_16605at 3859.133 kb on - strand, within CA264_16605at 3859.202 kb on + strand, within CA264_16605at 3859.202 kb on + strand, within CA264_16605at 3859.202 kb on + strand, within CA264_16605at 3859.203 kb on - strand, within CA264_16605at 3859.203 kb on - strand, within CA264_16605at 3859.203 kb on - strand, within CA264_16605at 3859.203 kb on - strand, within CA264_16605at 3859.259 kb on + strand, within CA264_16605at 3859.260 kb on - strand, within CA264_16605at 3859.293 kb on - strand, within CA264_16605at 3859.293 kb on - strand, within CA264_16605at 3859.294 kb on + strand, within CA264_16605at 3859.295 kb on - strand, within CA264_16605at 3859.313 kb on + strand, within CA264_16605at 3859.313 kb on + strand, within CA264_16605at 3859.313 kb on + strand, within CA264_16605at 3859.314 kb on - strand, within CA264_16605at 3859.320 kb on - strand, within CA264_16605at 3859.382 kb on + strand, within CA264_16605at 3859.383 kb on - strand, within CA264_16605at 3859.406 kb on + strand, within CA264_16605at 3859.407 kb on - strand, within CA264_16605at 3859.416 kb on - strand, within CA264_16605at 3859.424 kb on + strand, within CA264_16605at 3859.446 kb on + strand, within CA264_16605at 3859.497 kb on + strand, within CA264_16605at 3859.498 kb on - strand, within CA264_16605at 3859.546 kb on - strand, within CA264_16605at 3859.570 kb on - strand, within CA264_16605at 3859.607 kb on + strand, within CA264_16605at 3859.763 kb on + strand, within CA264_16605at 3859.767 kb on + strand, within CA264_16605at 3859.784 kb on + strand, within CA264_16605at 3859.785 kb on - strand, within CA264_16605at 3859.796 kb on + strand, within CA264_16605at 3859.827 kb on - strand, within CA264_16605at 3859.829 kb on - strand, within CA264_16605at 3859.829 kb on - strand, within CA264_16605at 3859.844 kb on + strand, within CA264_16605at 3859.844 kb on + strand, within CA264_16605at 3859.906 kb on - strand, within CA264_16605at 3859.953 kb on + strand, within CA264_16605at 3859.953 kb on + strand, within CA264_16605at 3859.954 kb on - strand, within CA264_16605at 3859.966 kb on - strand, within CA264_16605at 3859.966 kb on - strand, within CA264_16605at 3859.973 kb on + strand, within CA264_16605at 3860.032 kb on - strand, within CA264_16605at 3860.046 kb on + strand, within CA264_16605at 3860.100 kb on + strand, within CA264_16605at 3860.173 kb on + strand, within CA264_16605at 3860.174 kb on - strand, within CA264_16605at 3860.177 kb on + strand, within CA264_16605at 3860.178 kb on - strand, within CA264_16605at 3860.179 kb on + strand, within CA264_16605at 3860.180 kb on - strand, within CA264_16605at 3860.273 kb on + strandat 3860.274 kb on - strandat 3860.318 kb on + strandat 3860.319 kb on - strandat 3860.400 kb on + strandat 3860.426 kb on + strandat 3860.431 kb on + strandat 3860.431 kb on + strandat 3860.431 kb on + strandat 3860.446 kb on + strandat 3860.447 kb on - strandat 3860.447 kb on - strandat 3860.452 kb on + strandat 3860.547 kb on + strand, within CA264_16610at 3860.548 kb on - strand, within CA264_16610at 3860.608 kb on - strand, within CA264_16610at 3860.684 kb on - strand, within CA264_16610at 3860.720 kb on + strand, within CA264_16610at 3860.765 kb on + strand, within CA264_16610at 3860.766 kb on - strand, within CA264_16610at 3860.773 kb on + strand, within CA264_16610at 3860.774 kb on - strand, within CA264_16610at 3860.858 kb on + strand, within CA264_16610at 3860.858 kb on + strand, within CA264_16610at 3860.859 kb on - strand, within CA264_16610at 3860.862 kb on + strand, within CA264_16610at 3860.863 kb on - strand, within CA264_16610at 3860.871 kb on + strand, within CA264_16610at 3860.897 kb on - strand, within CA264_16610at 3860.919 kb on + strandat 3860.919 kb on + strandat 3860.963 kb on + strandat 3860.965 kb on + strandat 3860.966 kb on - strandat 3860.966 kb on - strandat 3860.975 kb on - strandat 3860.975 kb on - strandat 3861.010 kb on + strandat 3861.010 kb on + strandat 3861.011 kb on - strandat 3861.022 kb on - strandat 3861.092 kb on + strandat 3861.146 kb on - strandat 3861.159 kb on + strandat 3861.160 kb on - strandat 3861.161 kb on + strandat 3861.162 kb on - strandat 3861.181 kb on - strandat 3861.190 kb on - strandat 3861.190 kb on - strandat 3861.218 kb on + strandat 3861.219 kb on - strandat 3861.219 kb on - strandat 3861.219 kb on - strandat 3861.219 kb on - strandat 3861.236 kb on - strandat 3861.396 kb on - strandat 3861.396 kb on - strandat 3861.396 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM
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3,857,638 + CA264_16600 0.18 +0.5
3,857,638 + CA264_16600 0.18 +0.3
3,857,638 + CA264_16600 0.18 +0.1
3,857,640 + CA264_16600 0.18 -0.0
3,857,765 + CA264_16600 0.34 -0.4
3,857,766 - CA264_16600 0.34 +0.6
3,857,771 + CA264_16600 0.34 -0.8
3,857,818 + CA264_16600 0.40 -1.3
3,857,867 + CA264_16600 0.46 -0.1
3,857,868 - CA264_16600 0.46 +0.9
3,857,876 - CA264_16600 0.47 -1.0
3,857,913 - CA264_16600 0.52 -0.5
3,857,974 + CA264_16600 0.59 +0.5
3,858,015 + CA264_16600 0.65 -0.1
3,858,016 - CA264_16600 0.65 +0.1
3,858,089 - CA264_16600 0.74 -0.7
3,858,207 - CA264_16600 0.88 -0.8
3,858,213 + CA264_16600 0.89 -0.5
3,858,213 + CA264_16600 0.89 -0.7
3,858,214 - CA264_16600 0.89 -2.1
3,858,231 + +2.0
3,858,298 + -0.3
3,858,307 + -0.4
3,858,321 + -0.1
3,858,327 + -0.1
3,858,393 + +0.5
3,858,403 - +0.1
3,858,403 - -0.2
3,858,408 - -0.2
3,858,436 + +0.1
3,858,535 + -1.5
3,858,631 - +0.1
3,858,631 - +0.7
3,858,694 - +0.1
3,858,694 - -0.1
3,858,694 - +0.4
3,858,696 + +0.6
3,858,718 + -1.3
3,858,723 + -0.4
3,858,724 - +0.6
3,858,871 + CA264_16605 0.13 -0.6
3,858,872 - CA264_16605 0.13 -0.2
3,858,872 - CA264_16605 0.13 +0.2
3,858,948 + CA264_16605 0.17 +0.3
3,858,948 + CA264_16605 0.17 +0.7
3,858,948 + CA264_16605 0.17 -0.1
3,858,949 - CA264_16605 0.17 +0.4
3,858,950 + CA264_16605 0.18 +0.6
3,858,950 + CA264_16605 0.18 -0.1
3,858,951 - CA264_16605 0.18 +0.2
3,858,956 + CA264_16605 0.18 -0.9
3,858,967 - +0.6
3,858,986 + CA264_16605 0.20 +0.6
3,858,987 - CA264_16605 0.20 +0.9
3,858,987 - CA264_16605 0.20 +0.1
3,859,013 + CA264_16605 0.21 +0.6
3,859,032 + CA264_16605 0.22 -0.3
3,859,032 + CA264_16605 0.22 -1.8
3,859,032 + CA264_16605 0.22 -0.1
3,859,033 - CA264_16605 0.22 -0.5
3,859,035 - CA264_16605 0.22 +0.5
3,859,035 - CA264_16605 0.22 +2.2
3,859,037 + CA264_16605 0.22 -0.8
3,859,038 - CA264_16605 0.22 -0.4
3,859,117 - CA264_16605 0.27 +0.5
3,859,119 + CA264_16605 0.27 -0.2
3,859,119 + CA264_16605 0.27 -1.0
3,859,120 - CA264_16605 0.27 +0.1
3,859,133 - CA264_16605 0.28 -0.6
3,859,202 + CA264_16605 0.32 -0.3
3,859,202 + CA264_16605 0.32 +0.5
3,859,202 + CA264_16605 0.32 -0.6
3,859,203 - CA264_16605 0.32 -0.1
3,859,203 - CA264_16605 0.32 -0.1
3,859,203 - CA264_16605 0.32 -0.0
3,859,203 - CA264_16605 0.32 -0.5
3,859,259 + CA264_16605 0.35 +0.1
3,859,260 - CA264_16605 0.35 -0.1
3,859,293 - CA264_16605 0.37 +0.1
3,859,293 - CA264_16605 0.37 -1.6
3,859,294 + CA264_16605 0.37 +0.6
3,859,295 - CA264_16605 0.37 -0.7
3,859,313 + CA264_16605 0.38 -0.2
3,859,313 + CA264_16605 0.38 +0.7
3,859,313 + CA264_16605 0.38 -0.3
3,859,314 - CA264_16605 0.38 +0.3
3,859,320 - CA264_16605 0.38 -0.2
3,859,382 + CA264_16605 0.41 -0.3
3,859,383 - CA264_16605 0.42 -0.2
3,859,406 + CA264_16605 0.43 +0.4
3,859,407 - CA264_16605 0.43 -0.3
3,859,416 - CA264_16605 0.43 -1.8
3,859,424 + CA264_16605 0.44 -0.4
3,859,446 + CA264_16605 0.45 +1.2
3,859,497 + CA264_16605 0.48 -0.1
3,859,498 - CA264_16605 0.48 -0.6
3,859,546 - CA264_16605 0.51 -0.7
3,859,570 - CA264_16605 0.52 +0.7
3,859,607 + CA264_16605 0.54 -0.1
3,859,763 + CA264_16605 0.63 +0.4
3,859,767 + CA264_16605 0.63 -0.3
3,859,784 + CA264_16605 0.64 -0.5
3,859,785 - CA264_16605 0.64 -2.8
3,859,796 + CA264_16605 0.64 +0.5
3,859,827 - CA264_16605 0.66 -0.2
3,859,829 - CA264_16605 0.66 -0.6
3,859,829 - CA264_16605 0.66 +0.0
3,859,844 + CA264_16605 0.67 +1.0
3,859,844 + CA264_16605 0.67 -0.4
3,859,906 - CA264_16605 0.70 -0.1
3,859,953 + CA264_16605 0.73 -0.2
3,859,953 + CA264_16605 0.73 +0.4
3,859,954 - CA264_16605 0.73 +0.6
3,859,966 - CA264_16605 0.74 +0.4
3,859,966 - CA264_16605 0.74 +1.2
3,859,973 + CA264_16605 0.74 -0.9
3,860,032 - CA264_16605 0.77 -0.7
3,860,046 + CA264_16605 0.78 -0.5
3,860,100 + CA264_16605 0.81 -0.0
3,860,173 + CA264_16605 0.85 -1.0
3,860,174 - CA264_16605 0.85 -0.7
3,860,177 + CA264_16605 0.85 -0.3
3,860,178 - CA264_16605 0.86 -0.7
3,860,179 + CA264_16605 0.86 +0.1
3,860,180 - CA264_16605 0.86 +0.1
3,860,273 + +0.4
3,860,274 - -0.4
3,860,318 + +0.6
3,860,319 - +1.2
3,860,400 + +0.1
3,860,426 + -0.1
3,860,431 + +0.5
3,860,431 + +0.8
3,860,431 + -0.2
3,860,446 + -1.1
3,860,447 - -1.1
3,860,447 - +0.3
3,860,452 + -1.3
3,860,547 + CA264_16610 0.19 -0.1
3,860,548 - CA264_16610 0.19 -0.5
3,860,608 - CA264_16610 0.31 -0.7
3,860,684 - CA264_16610 0.47 -0.6
3,860,720 + CA264_16610 0.54 -0.4
3,860,765 + CA264_16610 0.63 -0.1
3,860,766 - CA264_16610 0.63 +1.9
3,860,773 + CA264_16610 0.64 -0.1
3,860,774 - CA264_16610 0.64 +0.7
3,860,858 + CA264_16610 0.81 +0.8
3,860,858 + CA264_16610 0.81 -0.1
3,860,859 - CA264_16610 0.81 -0.0
3,860,862 + CA264_16610 0.82 +1.4
3,860,863 - CA264_16610 0.82 +0.9
3,860,871 + CA264_16610 0.84 +0.1
3,860,897 - CA264_16610 0.89 -0.3
3,860,919 + -0.0
3,860,919 + -0.3
3,860,963 + -0.2
3,860,965 + +0.0
3,860,966 - -0.7
3,860,966 - -0.6
3,860,975 - +0.2
3,860,975 - +0.2
3,861,010 + -0.4
3,861,010 + +1.2
3,861,011 - +0.6
3,861,022 - -0.8
3,861,092 + -0.2
3,861,146 - -1.2
3,861,159 + +1.2
3,861,160 - +0.2
3,861,161 + +0.9
3,861,162 - -0.2
3,861,181 - +0.3
3,861,190 - +0.2
3,861,190 - +0.5
3,861,218 + -1.0
3,861,219 - -0.3
3,861,219 - +0.3
3,861,219 - +0.3
3,861,219 - +0.0
3,861,236 - -1.0
3,861,396 - +0.2
3,861,396 - -0.0
3,861,396 - -0.0

Or see this region's nucleotide sequence