Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16115

Experiment: m.b. Chlorite 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16115 and CA264_16120 are separated by 14 nucleotides CA264_16115: CA264_16115 - hypothetical protein, at 3,752,576 to 3,753,403 _16115 CA264_16120: CA264_16120 - sensor histidine kinase, at 3,753,418 to 3,754,467 _16120 Position (kb) 3752 3753 3754Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3751.587 kb on + strandat 3751.592 kb on - strandat 3751.616 kb on - strandat 3751.750 kb on + strandat 3751.818 kb on + strandat 3751.819 kb on - strandat 3752.003 kb on + strandat 3752.003 kb on + strandat 3752.016 kb on + strandat 3752.145 kb on - strandat 3752.164 kb on - strandat 3752.187 kb on + strandat 3752.203 kb on + strandat 3752.203 kb on + strandat 3752.204 kb on - strandat 3752.204 kb on - strandat 3752.204 kb on - strandat 3752.264 kb on + strandat 3752.330 kb on - strandat 3752.330 kb on - strandat 3752.342 kb on + strandat 3752.342 kb on + strandat 3752.342 kb on + strandat 3752.345 kb on + strandat 3752.346 kb on - strandat 3752.387 kb on + strandat 3752.387 kb on + strandat 3752.409 kb on + strandat 3752.419 kb on + strandat 3752.449 kb on + strandat 3752.450 kb on - strandat 3752.453 kb on + strandat 3752.454 kb on - strandat 3752.454 kb on - strandat 3752.454 kb on - strandat 3752.454 kb on - strandat 3752.461 kb on - strandat 3752.461 kb on - strandat 3752.466 kb on - strandat 3752.539 kb on - strandat 3752.539 kb on - strandat 3752.539 kb on - strandat 3752.549 kb on + strandat 3752.550 kb on - strandat 3752.551 kb on + strandat 3752.552 kb on - strandat 3752.559 kb on - strandat 3752.559 kb on - strandat 3752.562 kb on + strandat 3752.562 kb on + strandat 3752.563 kb on - strandat 3752.650 kb on - strandat 3752.661 kb on + strand, within CA264_16115at 3752.688 kb on + strand, within CA264_16115at 3752.688 kb on + strand, within CA264_16115at 3752.770 kb on + strand, within CA264_16115at 3753.071 kb on - strand, within CA264_16115at 3753.073 kb on - strand, within CA264_16115at 3753.244 kb on + strand, within CA264_16115at 3753.244 kb on + strand, within CA264_16115at 3753.245 kb on - strand, within CA264_16115at 3753.288 kb on + strand, within CA264_16115at 3753.348 kb on + strandat 3753.349 kb on - strandat 3753.445 kb on + strandat 3753.501 kb on - strandat 3753.593 kb on - strand, within CA264_16120at 3753.596 kb on - strand, within CA264_16120at 3753.596 kb on - strand, within CA264_16120at 3753.712 kb on + strand, within CA264_16120at 3753.757 kb on - strand, within CA264_16120at 3753.806 kb on - strand, within CA264_16120at 3753.808 kb on - strand, within CA264_16120at 3754.226 kb on + strand, within CA264_16120at 3754.227 kb on - strand, within CA264_16120at 3754.230 kb on - strand, within CA264_16120at 3754.230 kb on - strand, within CA264_16120at 3754.230 kb on - strand, within CA264_16120at 3754.234 kb on - strand, within CA264_16120at 3754.236 kb on - strand, within CA264_16120at 3754.236 kb on - strand, within CA264_16120at 3754.364 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM
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3,751,587 + +0.2
3,751,592 - +0.4
3,751,616 - -1.3
3,751,750 + +0.3
3,751,818 + +1.5
3,751,819 - +0.2
3,752,003 + -0.1
3,752,003 + -0.5
3,752,016 + -0.7
3,752,145 - +0.1
3,752,164 - -0.0
3,752,187 + -0.4
3,752,203 + +0.2
3,752,203 + -0.2
3,752,204 - +0.7
3,752,204 - +0.6
3,752,204 - -0.5
3,752,264 + +0.2
3,752,330 - -0.5
3,752,330 - +3.0
3,752,342 + -0.2
3,752,342 + +0.0
3,752,342 + -0.1
3,752,345 + +0.3
3,752,346 - +0.6
3,752,387 + -1.1
3,752,387 + -1.4
3,752,409 + +0.4
3,752,419 + +0.3
3,752,449 + -0.0
3,752,450 - -0.3
3,752,453 + +2.7
3,752,454 - -0.0
3,752,454 - +0.1
3,752,454 - +0.1
3,752,454 - +0.5
3,752,461 - -0.1
3,752,461 - +0.0
3,752,466 - -0.3
3,752,539 - -0.7
3,752,539 - +0.6
3,752,539 - -0.5
3,752,549 + +0.1
3,752,550 - -0.4
3,752,551 + -0.3
3,752,552 - +0.7
3,752,559 - -0.3
3,752,559 - +0.2
3,752,562 + +1.2
3,752,562 + +0.2
3,752,563 - -0.3
3,752,650 - -0.9
3,752,661 + CA264_16115 0.10 -0.9
3,752,688 + CA264_16115 0.14 +0.0
3,752,688 + CA264_16115 0.14 -0.1
3,752,770 + CA264_16115 0.23 -0.5
3,753,071 - CA264_16115 0.60 -2.4
3,753,073 - CA264_16115 0.60 -0.4
3,753,244 + CA264_16115 0.81 -0.8
3,753,244 + CA264_16115 0.81 -1.3
3,753,245 - CA264_16115 0.81 +1.0
3,753,288 + CA264_16115 0.86 -0.4
3,753,348 + +1.0
3,753,349 - -0.6
3,753,445 + -1.5
3,753,501 - -1.3
3,753,593 - CA264_16120 0.17 +0.8
3,753,596 - CA264_16120 0.17 -2.6
3,753,596 - CA264_16120 0.17 -2.3
3,753,712 + CA264_16120 0.28 -1.2
3,753,757 - CA264_16120 0.32 +0.4
3,753,806 - CA264_16120 0.37 -2.9
3,753,808 - CA264_16120 0.37 -1.5
3,754,226 + CA264_16120 0.77 -3.1
3,754,227 - CA264_16120 0.77 -1.4
3,754,230 - CA264_16120 0.77 -2.5
3,754,230 - CA264_16120 0.77 -0.6
3,754,230 - CA264_16120 0.77 -0.2
3,754,234 - CA264_16120 0.78 -2.5
3,754,236 - CA264_16120 0.78 -3.1
3,754,236 - CA264_16120 0.78 -1.2
3,754,364 - -2.7

Or see this region's nucleotide sequence