Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15585

Experiment: m.b. Chlorite 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15575 and CA264_15580 are separated by 110 nucleotidesCA264_15580 and CA264_15585 are separated by 80 nucleotidesCA264_15585 and CA264_15590 are separated by 178 nucleotidesCA264_15590 and CA264_15595 are separated by 89 nucleotides CA264_15575: CA264_15575 - hypothetical protein, at 3,644,172 to 3,644,435 _15575 CA264_15580: CA264_15580 - phospholipase, at 3,644,546 to 3,645,169 _15580 CA264_15585: CA264_15585 - short-chain dehydrogenase, at 3,645,250 to 3,646,050 _15585 CA264_15590: CA264_15590 - metal-dependent hydrolase, at 3,646,229 to 3,646,762 _15590 CA264_15595: CA264_15595 - hypothetical protein, at 3,646,852 to 3,647,805 _15595 Position (kb) 3645 3646 3647Strain fitness (log2 ratio) -2 -1 0 1at 3644.283 kb on + strand, within CA264_15575at 3644.300 kb on - strand, within CA264_15575at 3644.306 kb on + strand, within CA264_15575at 3644.306 kb on + strand, within CA264_15575at 3644.322 kb on - strand, within CA264_15575at 3644.322 kb on - strand, within CA264_15575at 3644.332 kb on + strand, within CA264_15575at 3644.444 kb on + strandat 3644.502 kb on + strandat 3644.555 kb on + strandat 3644.571 kb on - strandat 3644.571 kb on - strandat 3644.687 kb on - strand, within CA264_15580at 3644.687 kb on - strand, within CA264_15580at 3644.687 kb on - strand, within CA264_15580at 3644.691 kb on - strand, within CA264_15580at 3644.691 kb on - strand, within CA264_15580at 3644.805 kb on + strand, within CA264_15580at 3644.842 kb on - strand, within CA264_15580at 3644.905 kb on - strand, within CA264_15580at 3644.931 kb on + strand, within CA264_15580at 3644.997 kb on + strand, within CA264_15580at 3644.997 kb on + strand, within CA264_15580at 3644.997 kb on + strand, within CA264_15580at 3645.061 kb on - strand, within CA264_15580at 3645.066 kb on + strand, within CA264_15580at 3645.067 kb on - strand, within CA264_15580at 3645.105 kb on - strand, within CA264_15580at 3645.122 kb on + strandat 3645.122 kb on + strandat 3645.122 kb on + strandat 3645.123 kb on - strandat 3645.132 kb on + strandat 3645.238 kb on - strandat 3645.307 kb on + strandat 3645.359 kb on - strand, within CA264_15585at 3645.561 kb on - strand, within CA264_15585at 3645.561 kb on - strand, within CA264_15585at 3645.590 kb on + strand, within CA264_15585at 3645.591 kb on - strand, within CA264_15585at 3645.591 kb on - strand, within CA264_15585at 3645.875 kb on + strand, within CA264_15585at 3645.877 kb on + strand, within CA264_15585at 3645.878 kb on - strand, within CA264_15585at 3645.878 kb on - strand, within CA264_15585at 3645.882 kb on + strand, within CA264_15585at 3645.883 kb on - strand, within CA264_15585at 3645.883 kb on - strand, within CA264_15585at 3645.884 kb on + strand, within CA264_15585at 3645.884 kb on + strand, within CA264_15585at 3645.885 kb on - strand, within CA264_15585at 3645.943 kb on + strand, within CA264_15585at 3645.943 kb on + strand, within CA264_15585at 3646.026 kb on - strandat 3646.086 kb on + strandat 3646.087 kb on - strandat 3646.087 kb on - strandat 3646.088 kb on + strandat 3646.088 kb on + strandat 3646.089 kb on - strandat 3646.089 kb on - strandat 3646.102 kb on + strandat 3646.139 kb on - strandat 3646.140 kb on + strandat 3646.141 kb on - strandat 3646.144 kb on + strandat 3646.144 kb on + strandat 3646.144 kb on + strandat 3646.144 kb on + strandat 3646.145 kb on - strandat 3646.168 kb on + strandat 3646.184 kb on + strandat 3646.245 kb on - strandat 3646.348 kb on - strand, within CA264_15590at 3646.348 kb on - strand, within CA264_15590at 3646.509 kb on + strand, within CA264_15590at 3646.688 kb on + strand, within CA264_15590at 3646.760 kb on + strandat 3646.760 kb on + strandat 3646.761 kb on - strandat 3646.761 kb on - strandat 3646.765 kb on + strandat 3646.766 kb on - strandat 3646.766 kb on - strandat 3646.766 kb on - strandat 3646.766 kb on - strandat 3646.766 kb on - strandat 3646.817 kb on - strandat 3646.999 kb on - strand, within CA264_15595at 3646.999 kb on - strand, within CA264_15595at 3647.044 kb on - strand, within CA264_15595

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM
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3,644,283 + CA264_15575 0.42 +0.0
3,644,300 - CA264_15575 0.48 +0.5
3,644,306 + CA264_15575 0.51 +0.0
3,644,306 + CA264_15575 0.51 -0.4
3,644,322 - CA264_15575 0.57 +0.1
3,644,322 - CA264_15575 0.57 +0.3
3,644,332 + CA264_15575 0.61 -0.6
3,644,444 + -0.6
3,644,502 + -0.3
3,644,555 + +0.6
3,644,571 - -0.5
3,644,571 - -1.2
3,644,687 - CA264_15580 0.23 -0.7
3,644,687 - CA264_15580 0.23 +0.4
3,644,687 - CA264_15580 0.23 +0.9
3,644,691 - CA264_15580 0.23 +0.8
3,644,691 - CA264_15580 0.23 -0.3
3,644,805 + CA264_15580 0.42 -0.5
3,644,842 - CA264_15580 0.47 -1.5
3,644,905 - CA264_15580 0.58 -0.5
3,644,931 + CA264_15580 0.62 -0.6
3,644,997 + CA264_15580 0.72 +0.4
3,644,997 + CA264_15580 0.72 -0.6
3,644,997 + CA264_15580 0.72 -0.5
3,645,061 - CA264_15580 0.83 -0.1
3,645,066 + CA264_15580 0.83 +0.4
3,645,067 - CA264_15580 0.83 -0.8
3,645,105 - CA264_15580 0.90 -0.7
3,645,122 + +0.6
3,645,122 + -0.2
3,645,122 + +0.2
3,645,123 - -1.4
3,645,132 + -0.3
3,645,238 - -0.2
3,645,307 + +0.2
3,645,359 - CA264_15585 0.14 -0.4
3,645,561 - CA264_15585 0.39 -0.0
3,645,561 - CA264_15585 0.39 -1.3
3,645,590 + CA264_15585 0.42 +0.1
3,645,591 - CA264_15585 0.43 -0.0
3,645,591 - CA264_15585 0.43 -0.6
3,645,875 + CA264_15585 0.78 -0.2
3,645,877 + CA264_15585 0.78 -0.3
3,645,878 - CA264_15585 0.78 -1.5
3,645,878 - CA264_15585 0.78 -0.3
3,645,882 + CA264_15585 0.79 -0.3
3,645,883 - CA264_15585 0.79 +0.3
3,645,883 - CA264_15585 0.79 -1.7
3,645,884 + CA264_15585 0.79 +0.5
3,645,884 + CA264_15585 0.79 -0.4
3,645,885 - CA264_15585 0.79 +0.3
3,645,943 + CA264_15585 0.87 -0.1
3,645,943 + CA264_15585 0.87 -0.6
3,646,026 - -0.5
3,646,086 + -1.8
3,646,087 - -0.6
3,646,087 - -1.6
3,646,088 + -1.8
3,646,088 + -2.6
3,646,089 - -0.3
3,646,089 - +0.1
3,646,102 + +1.2
3,646,139 - -0.7
3,646,140 + -0.1
3,646,141 - +0.0
3,646,144 + +1.2
3,646,144 + +0.2
3,646,144 + -1.1
3,646,144 + -0.3
3,646,145 - +0.5
3,646,168 + +0.2
3,646,184 + -0.0
3,646,245 - -0.5
3,646,348 - CA264_15590 0.22 -0.2
3,646,348 - CA264_15590 0.22 +1.7
3,646,509 + CA264_15590 0.52 +0.6
3,646,688 + CA264_15590 0.86 -0.3
3,646,760 + -0.3
3,646,760 + +0.2
3,646,761 - -0.0
3,646,761 - +0.6
3,646,765 + +0.5
3,646,766 - -0.7
3,646,766 - +0.4
3,646,766 - +1.5
3,646,766 - +0.2
3,646,766 - +1.0
3,646,817 - +0.2
3,646,999 - CA264_15595 0.15 -0.1
3,646,999 - CA264_15595 0.15 -0.4
3,647,044 - CA264_15595 0.20 -0.2

Or see this region's nucleotide sequence