Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14955

Experiment: m.b. Chlorite 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14945 and CA264_14950 overlap by 26 nucleotidesCA264_14950 and CA264_14955 are separated by 19 nucleotidesCA264_14955 and CA264_14960 are separated by 81 nucleotidesCA264_14960 and CA264_14965 are separated by 249 nucleotides CA264_14945: CA264_14945 - RNA polymerase subunit sigma-24, at 3,509,996 to 3,510,598 _14945 CA264_14950: CA264_14950 - hypothetical protein, at 3,510,573 to 3,510,803 _14950 CA264_14955: CA264_14955 - endonuclease III, at 3,510,823 to 3,511,509 _14955 CA264_14960: CA264_14960 - hypothetical protein, at 3,511,591 to 3,512,070 _14960 CA264_14965: CA264_14965 - glycosyltransferase WbuB, at 3,512,320 to 3,513,516 _14965 Position (kb) 3510 3511 3512Strain fitness (log2 ratio) -2 -1 0 1 2at 3509.865 kb on - strandat 3509.889 kb on - strandat 3509.900 kb on + strandat 3509.900 kb on + strandat 3509.956 kb on + strandat 3509.956 kb on + strandat 3509.956 kb on + strandat 3509.957 kb on - strandat 3509.963 kb on + strandat 3509.971 kb on + strandat 3509.972 kb on - strandat 3510.031 kb on - strandat 3510.076 kb on - strand, within CA264_14945at 3510.076 kb on - strand, within CA264_14945at 3510.101 kb on + strand, within CA264_14945at 3510.102 kb on - strand, within CA264_14945at 3510.110 kb on - strand, within CA264_14945at 3510.114 kb on + strand, within CA264_14945at 3510.134 kb on + strand, within CA264_14945at 3510.181 kb on + strand, within CA264_14945at 3510.181 kb on + strand, within CA264_14945at 3510.517 kb on + strand, within CA264_14945at 3510.577 kb on + strandat 3510.587 kb on + strandat 3510.609 kb on + strand, within CA264_14950at 3510.610 kb on - strand, within CA264_14950at 3510.610 kb on - strand, within CA264_14950at 3510.610 kb on - strand, within CA264_14950at 3510.613 kb on + strand, within CA264_14950at 3510.613 kb on + strand, within CA264_14950at 3510.613 kb on + strand, within CA264_14950at 3510.614 kb on - strand, within CA264_14950at 3510.614 kb on - strand, within CA264_14950at 3510.614 kb on - strand, within CA264_14950at 3510.662 kb on + strand, within CA264_14950at 3510.663 kb on - strand, within CA264_14950at 3510.663 kb on - strand, within CA264_14950at 3510.663 kb on - strand, within CA264_14950at 3510.679 kb on + strand, within CA264_14950at 3510.718 kb on + strand, within CA264_14950at 3510.787 kb on + strandat 3510.802 kb on - strandat 3510.998 kb on - strand, within CA264_14955at 3510.998 kb on - strand, within CA264_14955at 3511.021 kb on - strand, within CA264_14955at 3511.148 kb on + strand, within CA264_14955at 3511.160 kb on + strand, within CA264_14955at 3511.197 kb on + strand, within CA264_14955at 3511.277 kb on + strand, within CA264_14955at 3511.489 kb on - strandat 3511.580 kb on - strandat 3511.615 kb on - strandat 3511.654 kb on - strand, within CA264_14960at 3511.821 kb on + strand, within CA264_14960at 3511.970 kb on - strand, within CA264_14960at 3512.030 kb on - strandat 3512.053 kb on + strandat 3512.053 kb on + strandat 3512.054 kb on - strandat 3512.079 kb on - strandat 3512.086 kb on + strandat 3512.087 kb on - strandat 3512.091 kb on - strandat 3512.202 kb on - strandat 3512.461 kb on + strand, within CA264_14965at 3512.462 kb on - strand, within CA264_14965at 3512.490 kb on + strand, within CA264_14965at 3512.492 kb on + strand, within CA264_14965at 3512.492 kb on + strand, within CA264_14965at 3512.493 kb on - strand, within CA264_14965

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM
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3,509,865 - -0.4
3,509,889 - -0.0
3,509,900 + +0.2
3,509,900 + +1.7
3,509,956 + +2.6
3,509,956 + +0.6
3,509,956 + -0.3
3,509,957 - -0.2
3,509,963 + +0.2
3,509,971 + -1.8
3,509,972 - +0.4
3,510,031 - -0.7
3,510,076 - CA264_14945 0.13 -0.1
3,510,076 - CA264_14945 0.13 +0.2
3,510,101 + CA264_14945 0.17 -0.3
3,510,102 - CA264_14945 0.18 -0.7
3,510,110 - CA264_14945 0.19 -0.8
3,510,114 + CA264_14945 0.20 -1.0
3,510,134 + CA264_14945 0.23 -1.3
3,510,181 + CA264_14945 0.31 -0.5
3,510,181 + CA264_14945 0.31 -0.9
3,510,517 + CA264_14945 0.86 +0.5
3,510,577 + -0.3
3,510,587 + -1.7
3,510,609 + CA264_14950 0.16 -0.5
3,510,610 - CA264_14950 0.16 +0.4
3,510,610 - CA264_14950 0.16 -0.2
3,510,610 - CA264_14950 0.16 -0.3
3,510,613 + CA264_14950 0.17 -1.4
3,510,613 + CA264_14950 0.17 -0.5
3,510,613 + CA264_14950 0.17 -0.0
3,510,614 - CA264_14950 0.18 +0.2
3,510,614 - CA264_14950 0.18 -0.1
3,510,614 - CA264_14950 0.18 +0.1
3,510,662 + CA264_14950 0.39 +0.5
3,510,663 - CA264_14950 0.39 -0.0
3,510,663 - CA264_14950 0.39 +0.0
3,510,663 - CA264_14950 0.39 -0.1
3,510,679 + CA264_14950 0.46 -0.5
3,510,718 + CA264_14950 0.63 -0.8
3,510,787 + +0.2
3,510,802 - +0.4
3,510,998 - CA264_14955 0.25 -1.5
3,510,998 - CA264_14955 0.25 +0.2
3,511,021 - CA264_14955 0.29 -0.1
3,511,148 + CA264_14955 0.47 -1.0
3,511,160 + CA264_14955 0.49 +0.4
3,511,197 + CA264_14955 0.54 -0.2
3,511,277 + CA264_14955 0.66 -0.5
3,511,489 - +1.2
3,511,580 - +0.7
3,511,615 - +0.6
3,511,654 - CA264_14960 0.13 -0.2
3,511,821 + CA264_14960 0.48 +0.1
3,511,970 - CA264_14960 0.79 -0.1
3,512,030 - -0.3
3,512,053 + -0.5
3,512,053 + +0.2
3,512,054 - +0.4
3,512,079 - -0.4
3,512,086 + -0.0
3,512,087 - -2.4
3,512,091 - +0.0
3,512,202 - +0.3
3,512,461 + CA264_14965 0.12 -0.0
3,512,462 - CA264_14965 0.12 -0.4
3,512,490 + CA264_14965 0.14 -0.3
3,512,492 + CA264_14965 0.14 -0.2
3,512,492 + CA264_14965 0.14 +0.8
3,512,493 - CA264_14965 0.14 -0.9

Or see this region's nucleotide sequence