Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14820

Experiment: m.b. Chlorite 0.2 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_14810 and CA264_14815 are separated by 457 nucleotidesCA264_14815 and CA264_14820 are separated by 158 nucleotidesCA264_14820 and CA264_14825 are separated by 69 nucleotidesCA264_14825 and CA264_14830 are separated by 256 nucleotides CA264_14810: CA264_14810 - hypothetical protein, at 3,478,184 to 3,478,888 _14810 CA264_14815: CA264_14815 - transcriptional regulator, at 3,479,346 to 3,479,579 _14815 CA264_14820: CA264_14820 - hypothetical protein, at 3,479,738 to 3,480,067 _14820 CA264_14825: CA264_14825 - hypothetical protein, at 3,480,137 to 3,480,547 _14825 CA264_14830: CA264_14830 - DNA methyltransferase, at 3,480,804 to 3,484,007 _14830 Position (kb) 3479 3480 3481Strain fitness (log2 ratio) -2 -1 0 1 2at 3478.764 kb on + strand, within CA264_14810at 3478.772 kb on + strand, within CA264_14810at 3478.784 kb on + strand, within CA264_14810at 3478.786 kb on + strand, within CA264_14810at 3478.786 kb on + strand, within CA264_14810at 3478.787 kb on - strand, within CA264_14810at 3478.787 kb on - strand, within CA264_14810at 3478.846 kb on + strandat 3478.868 kb on + strandat 3478.869 kb on - strandat 3478.871 kb on - strandat 3478.871 kb on - strandat 3478.898 kb on - strandat 3478.898 kb on - strandat 3478.901 kb on + strandat 3478.902 kb on - strandat 3478.903 kb on + strandat 3478.904 kb on - strandat 3478.904 kb on - strandat 3478.904 kb on - strandat 3478.904 kb on - strandat 3478.904 kb on - strandat 3478.904 kb on - strandat 3478.912 kb on - strandat 3478.925 kb on - strandat 3478.969 kb on + strandat 3478.969 kb on + strandat 3478.970 kb on - strandat 3478.974 kb on - strandat 3479.003 kb on + strandat 3479.012 kb on - strandat 3479.039 kb on + strandat 3479.063 kb on - strandat 3479.068 kb on + strandat 3479.088 kb on - strandat 3479.088 kb on - strandat 3479.088 kb on - strandat 3479.089 kb on + strandat 3479.089 kb on + strandat 3479.089 kb on + strandat 3479.090 kb on - strandat 3479.090 kb on - strandat 3479.101 kb on + strandat 3479.102 kb on - strandat 3479.129 kb on - strandat 3479.130 kb on + strandat 3479.131 kb on - strandat 3479.134 kb on - strandat 3479.148 kb on - strandat 3479.159 kb on + strandat 3479.174 kb on + strandat 3479.174 kb on + strandat 3479.179 kb on + strandat 3479.194 kb on + strandat 3479.194 kb on + strandat 3479.217 kb on - strandat 3479.220 kb on + strandat 3479.284 kb on + strandat 3479.284 kb on + strandat 3479.284 kb on + strandat 3479.284 kb on + strandat 3479.285 kb on - strandat 3479.285 kb on - strandat 3479.298 kb on + strandat 3479.298 kb on + strandat 3479.302 kb on + strandat 3479.302 kb on + strandat 3479.318 kb on + strandat 3479.318 kb on + strandat 3479.330 kb on - strandat 3479.340 kb on + strandat 3479.341 kb on - strandat 3479.342 kb on + strandat 3479.342 kb on + strandat 3479.342 kb on + strandat 3479.377 kb on - strand, within CA264_14815at 3479.495 kb on - strand, within CA264_14815at 3479.562 kb on + strandat 3479.610 kb on + strandat 3479.631 kb on - strandat 3479.664 kb on - strandat 3479.737 kb on + strandat 3479.737 kb on + strandat 3479.738 kb on - strandat 3479.765 kb on - strandat 3479.822 kb on + strand, within CA264_14820at 3479.822 kb on + strand, within CA264_14820at 3479.823 kb on - strand, within CA264_14820at 3479.823 kb on - strand, within CA264_14820at 3479.823 kb on - strand, within CA264_14820at 3479.833 kb on - strand, within CA264_14820at 3479.858 kb on + strand, within CA264_14820at 3479.858 kb on + strand, within CA264_14820at 3479.858 kb on + strand, within CA264_14820at 3479.858 kb on + strand, within CA264_14820at 3479.859 kb on - strand, within CA264_14820at 3479.859 kb on - strand, within CA264_14820at 3479.891 kb on + strand, within CA264_14820at 3479.891 kb on + strand, within CA264_14820at 3479.891 kb on + strand, within CA264_14820at 3479.893 kb on + strand, within CA264_14820at 3479.894 kb on - strand, within CA264_14820at 3479.896 kb on + strand, within CA264_14820at 3479.896 kb on + strand, within CA264_14820at 3479.896 kb on + strand, within CA264_14820at 3479.897 kb on - strand, within CA264_14820at 3479.897 kb on - strand, within CA264_14820at 3479.897 kb on - strand, within CA264_14820at 3479.897 kb on - strand, within CA264_14820at 3479.897 kb on - strand, within CA264_14820at 3479.897 kb on - strand, within CA264_14820at 3479.924 kb on - strand, within CA264_14820at 3479.933 kb on + strand, within CA264_14820at 3480.050 kb on + strandat 3480.050 kb on + strandat 3480.050 kb on + strandat 3480.051 kb on - strandat 3480.051 kb on - strandat 3480.051 kb on - strandat 3480.054 kb on + strandat 3480.054 kb on + strandat 3480.054 kb on + strandat 3480.054 kb on + strandat 3480.054 kb on + strandat 3480.055 kb on - strandat 3480.065 kb on + strandat 3480.074 kb on + strandat 3480.074 kb on + strandat 3480.074 kb on + strandat 3480.075 kb on - strandat 3480.075 kb on - strandat 3480.075 kb on - strandat 3480.075 kb on - strandat 3480.075 kb on - strandat 3480.075 kb on - strandat 3480.079 kb on - strandat 3480.151 kb on - strandat 3480.153 kb on + strandat 3480.156 kb on + strandat 3480.156 kb on + strandat 3480.157 kb on - strandat 3480.157 kb on - strandat 3480.232 kb on - strand, within CA264_14825at 3480.255 kb on + strand, within CA264_14825at 3480.255 kb on + strand, within CA264_14825at 3480.256 kb on - strand, within CA264_14825at 3480.256 kb on - strand, within CA264_14825at 3480.261 kb on - strand, within CA264_14825at 3480.283 kb on + strand, within CA264_14825at 3480.285 kb on + strand, within CA264_14825at 3480.286 kb on - strand, within CA264_14825at 3480.286 kb on - strand, within CA264_14825at 3480.286 kb on - strand, within CA264_14825at 3480.286 kb on - strand, within CA264_14825at 3480.290 kb on + strand, within CA264_14825at 3480.291 kb on - strand, within CA264_14825at 3480.297 kb on + strand, within CA264_14825at 3480.308 kb on + strand, within CA264_14825at 3480.308 kb on + strand, within CA264_14825at 3480.309 kb on - strand, within CA264_14825at 3480.314 kb on + strand, within CA264_14825at 3480.314 kb on + strand, within CA264_14825at 3480.315 kb on - strand, within CA264_14825at 3480.315 kb on - strand, within CA264_14825at 3480.315 kb on - strand, within CA264_14825at 3480.450 kb on + strand, within CA264_14825at 3480.450 kb on + strand, within CA264_14825at 3480.450 kb on + strand, within CA264_14825at 3480.450 kb on + strand, within CA264_14825at 3480.451 kb on - strand, within CA264_14825at 3480.451 kb on - strand, within CA264_14825at 3480.523 kb on + strandat 3480.524 kb on - strandat 3480.524 kb on - strandat 3480.525 kb on + strandat 3480.530 kb on - strandat 3480.554 kb on - strandat 3480.586 kb on - strandat 3480.586 kb on - strandat 3480.636 kb on - strandat 3480.636 kb on - strandat 3480.640 kb on + strandat 3480.641 kb on - strandat 3480.643 kb on - strandat 3480.643 kb on - strandat 3480.645 kb on + strandat 3480.646 kb on - strandat 3480.646 kb on - strandat 3480.646 kb on - strandat 3480.646 kb on - strandat 3480.650 kb on + strandat 3480.650 kb on + strandat 3480.650 kb on + strandat 3480.651 kb on - strandat 3480.710 kb on - strandat 3480.710 kb on - strandat 3480.731 kb on - strandat 3480.731 kb on - strandat 3480.753 kb on - strandat 3480.753 kb on - strandat 3480.787 kb on + strandat 3480.788 kb on - strandat 3480.788 kb on - strandat 3480.819 kb on + strandat 3480.819 kb on + strandat 3480.823 kb on + strandat 3480.857 kb on - strandat 3480.899 kb on - strandat 3480.920 kb on - strandat 3480.967 kb on - strandat 3480.968 kb on + strandat 3480.969 kb on - strandat 3480.969 kb on - strandat 3480.969 kb on - strandat 3480.971 kb on + strandat 3480.971 kb on + strandat 3480.971 kb on + strandat 3480.972 kb on - strandat 3480.972 kb on - strandat 3480.972 kb on - strandat 3480.972 kb on - strandat 3480.972 kb on - strandat 3480.973 kb on + strandat 3480.989 kb on - strandat 3480.994 kb on + strandat 3480.994 kb on + strandat 3480.999 kb on + strandat 3480.999 kb on + strandat 3481.000 kb on - strandat 3481.000 kb on - strandat 3481.018 kb on + strandat 3481.018 kb on + strandat 3481.019 kb on - strandat 3481.019 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM
remove
3,478,764 + CA264_14810 0.82 -0.6
3,478,772 + CA264_14810 0.83 -0.8
3,478,784 + CA264_14810 0.85 +1.0
3,478,786 + CA264_14810 0.85 +1.1
3,478,786 + CA264_14810 0.85 -0.5
3,478,787 - CA264_14810 0.86 +0.3
3,478,787 - CA264_14810 0.86 -0.6
3,478,846 + +0.2
3,478,868 + -0.1
3,478,869 - -0.1
3,478,871 - +1.4
3,478,871 - -1.8
3,478,898 - +0.5
3,478,898 - +0.1
3,478,901 + -0.9
3,478,902 - -0.9
3,478,903 + +0.7
3,478,904 - +0.1
3,478,904 - +0.2
3,478,904 - -0.9
3,478,904 - +0.1
3,478,904 - -0.4
3,478,904 - -0.1
3,478,912 - -0.3
3,478,925 - +0.7
3,478,969 + +0.6
3,478,969 + -0.4
3,478,970 - +0.0
3,478,974 - +0.2
3,479,003 + -0.4
3,479,012 - -0.1
3,479,039 + -0.2
3,479,063 - -0.4
3,479,068 + -1.8
3,479,088 - +0.6
3,479,088 - +0.1
3,479,088 - -0.5
3,479,089 + -0.3
3,479,089 + +0.7
3,479,089 + +0.2
3,479,090 - -0.5
3,479,090 - -0.4
3,479,101 + -0.3
3,479,102 - -0.4
3,479,129 - -0.5
3,479,130 + +0.4
3,479,131 - +1.2
3,479,134 - -0.2
3,479,148 - +0.1
3,479,159 + -0.4
3,479,174 + -1.6
3,479,174 + -0.5
3,479,179 + -0.4
3,479,194 + -1.0
3,479,194 + +0.7
3,479,217 - -0.5
3,479,220 + -0.7
3,479,284 + +0.0
3,479,284 + +1.4
3,479,284 + -0.2
3,479,284 + +0.2
3,479,285 - +0.0
3,479,285 - +1.0
3,479,298 + +0.8
3,479,298 + +0.5
3,479,302 + -0.4
3,479,302 + -1.7
3,479,318 + -0.1
3,479,318 + -0.7
3,479,330 - -0.3
3,479,340 + +0.5
3,479,341 - +0.1
3,479,342 + -0.8
3,479,342 + -0.0
3,479,342 + +0.0
3,479,377 - CA264_14815 0.13 -0.1
3,479,495 - CA264_14815 0.64 -1.6
3,479,562 + -0.6
3,479,610 + -0.3
3,479,631 - -0.3
3,479,664 - -0.6
3,479,737 + +0.6
3,479,737 + -0.3
3,479,738 - -0.5
3,479,765 - +0.4
3,479,822 + CA264_14820 0.25 -0.8
3,479,822 + CA264_14820 0.25 -0.5
3,479,823 - CA264_14820 0.26 -0.2
3,479,823 - CA264_14820 0.26 -1.0
3,479,823 - CA264_14820 0.26 -0.2
3,479,833 - CA264_14820 0.29 -0.7
3,479,858 + CA264_14820 0.36 +0.2
3,479,858 + CA264_14820 0.36 -0.2
3,479,858 + CA264_14820 0.36 +0.4
3,479,858 + CA264_14820 0.36 +0.0
3,479,859 - CA264_14820 0.37 +0.2
3,479,859 - CA264_14820 0.37 -0.4
3,479,891 + CA264_14820 0.46 +0.1
3,479,891 + CA264_14820 0.46 -0.4
3,479,891 + CA264_14820 0.46 +0.5
3,479,893 + CA264_14820 0.47 +0.7
3,479,894 - CA264_14820 0.47 +0.1
3,479,896 + CA264_14820 0.48 -0.7
3,479,896 + CA264_14820 0.48 -0.2
3,479,896 + CA264_14820 0.48 +0.7
3,479,897 - CA264_14820 0.48 -0.2
3,479,897 - CA264_14820 0.48 -0.2
3,479,897 - CA264_14820 0.48 -1.5
3,479,897 - CA264_14820 0.48 +0.1
3,479,897 - CA264_14820 0.48 +1.2
3,479,897 - CA264_14820 0.48 +1.8
3,479,924 - CA264_14820 0.56 -0.6
3,479,933 + CA264_14820 0.59 -0.5
3,480,050 + -0.8
3,480,050 + -0.2
3,480,050 + -0.1
3,480,051 - -0.8
3,480,051 - +0.7
3,480,051 - -0.4
3,480,054 + -0.3
3,480,054 + -0.6
3,480,054 + +1.2
3,480,054 + -0.2
3,480,054 + +0.6
3,480,055 - -0.4
3,480,065 + +0.1
3,480,074 + +1.6
3,480,074 + +0.1
3,480,074 + -0.3
3,480,075 - +0.0
3,480,075 - +0.1
3,480,075 - +0.2
3,480,075 - +0.6
3,480,075 - -0.1
3,480,075 - -1.0
3,480,079 - +0.9
3,480,151 - -0.1
3,480,153 + -1.4
3,480,156 + -0.8
3,480,156 + +0.2
3,480,157 - +0.7
3,480,157 - -0.9
3,480,232 - CA264_14825 0.23 -0.5
3,480,255 + CA264_14825 0.29 +2.2
3,480,255 + CA264_14825 0.29 -0.3
3,480,256 - CA264_14825 0.29 -1.4
3,480,256 - CA264_14825 0.29 -0.2
3,480,261 - CA264_14825 0.30 -0.5
3,480,283 + CA264_14825 0.36 +0.1
3,480,285 + CA264_14825 0.36 -0.0
3,480,286 - CA264_14825 0.36 -0.0
3,480,286 - CA264_14825 0.36 -0.1
3,480,286 - CA264_14825 0.36 -0.2
3,480,286 - CA264_14825 0.36 -0.9
3,480,290 + CA264_14825 0.37 -0.1
3,480,291 - CA264_14825 0.37 -0.5
3,480,297 + CA264_14825 0.39 -1.2
3,480,308 + CA264_14825 0.42 -1.7
3,480,308 + CA264_14825 0.42 +1.9
3,480,309 - CA264_14825 0.42 +1.6
3,480,314 + CA264_14825 0.43 +0.2
3,480,314 + CA264_14825 0.43 +0.8
3,480,315 - CA264_14825 0.43 -0.4
3,480,315 - CA264_14825 0.43 +0.4
3,480,315 - CA264_14825 0.43 +0.0
3,480,450 + CA264_14825 0.76 +0.1
3,480,450 + CA264_14825 0.76 +0.1
3,480,450 + CA264_14825 0.76 -0.1
3,480,450 + CA264_14825 0.76 -0.3
3,480,451 - CA264_14825 0.76 +0.1
3,480,451 - CA264_14825 0.76 -0.8
3,480,523 + -1.1
3,480,524 - +0.6
3,480,524 - -0.8
3,480,525 + -0.6
3,480,530 - -0.6
3,480,554 - +0.0
3,480,586 - +0.4
3,480,586 - -1.3
3,480,636 - -0.6
3,480,636 - -0.3
3,480,640 + -0.6
3,480,641 - +1.9
3,480,643 - -0.5
3,480,643 - -0.2
3,480,645 + -0.4
3,480,646 - +0.0
3,480,646 - -0.6
3,480,646 - +1.0
3,480,646 - -0.4
3,480,650 + -0.1
3,480,650 + -1.4
3,480,650 + -1.1
3,480,651 - +0.8
3,480,710 - +0.6
3,480,710 - -0.5
3,480,731 - +0.4
3,480,731 - +0.1
3,480,753 - -0.8
3,480,753 - +0.3
3,480,787 + -0.9
3,480,788 - -0.3
3,480,788 - +0.0
3,480,819 + -0.6
3,480,819 + -0.5
3,480,823 + -0.5
3,480,857 - -0.2
3,480,899 - +0.1
3,480,920 - -1.4
3,480,967 - +0.4
3,480,968 + +0.7
3,480,969 - -0.0
3,480,969 - -0.4
3,480,969 - -0.2
3,480,971 + -0.8
3,480,971 + -0.9
3,480,971 + -0.7
3,480,972 - +0.4
3,480,972 - -0.0
3,480,972 - -0.5
3,480,972 - -0.0
3,480,972 - +0.0
3,480,973 + -0.4
3,480,989 - -0.4
3,480,994 + -0.3
3,480,994 + +0.6
3,480,999 + +0.0
3,480,999 + -0.2
3,481,000 - -2.1
3,481,000 - +0.2
3,481,018 + +1.0
3,481,018 + +0.9
3,481,019 - +0.4
3,481,019 - -0.6

Or see this region's nucleotide sequence