Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14470

Experiment: m.b. Chlorite 0.2 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_14465 and CA264_14470 are separated by 584 nucleotidesCA264_14470 and CA264_14475 are separated by 92 nucleotides CA264_14465: CA264_14465 - translation initiation factor IF-2, at 3,393,501 to 3,396,584 _14465 CA264_14470: CA264_14470 - hypothetical protein, at 3,397,169 to 3,397,504 _14470 CA264_14475: CA264_14475 - hypothetical protein, at 3,397,597 to 3,398,550 _14475 Position (kb) 3397 3398Strain fitness (log2 ratio) -2 -1 0 1at 3396.575 kb on + strandat 3396.648 kb on + strandat 3396.659 kb on + strandat 3396.697 kb on + strandat 3396.727 kb on + strandat 3396.727 kb on + strandat 3396.728 kb on - strandat 3396.729 kb on + strandat 3396.729 kb on + strandat 3396.730 kb on - strandat 3396.730 kb on - strandat 3396.730 kb on - strandat 3396.730 kb on - strandat 3396.733 kb on + strandat 3396.733 kb on + strandat 3396.734 kb on - strandat 3396.780 kb on - strandat 3396.791 kb on - strandat 3396.850 kb on - strandat 3396.879 kb on + strandat 3396.951 kb on + strandat 3397.005 kb on + strandat 3397.090 kb on - strandat 3397.090 kb on - strandat 3397.146 kb on + strandat 3397.147 kb on - strandat 3397.148 kb on + strandat 3397.149 kb on - strandat 3397.149 kb on - strandat 3397.149 kb on - strandat 3397.152 kb on + strandat 3397.153 kb on - strandat 3397.154 kb on + strandat 3397.155 kb on - strandat 3397.160 kb on + strandat 3397.210 kb on + strand, within CA264_14470at 3397.210 kb on + strand, within CA264_14470at 3397.211 kb on - strand, within CA264_14470at 3397.311 kb on + strand, within CA264_14470at 3397.315 kb on + strand, within CA264_14470at 3397.316 kb on - strand, within CA264_14470at 3397.320 kb on + strand, within CA264_14470at 3397.320 kb on + strand, within CA264_14470at 3397.353 kb on - strand, within CA264_14470at 3397.401 kb on + strand, within CA264_14470at 3397.414 kb on + strand, within CA264_14470at 3397.415 kb on - strand, within CA264_14470at 3397.524 kb on + strandat 3397.527 kb on + strandat 3397.529 kb on + strandat 3397.792 kb on + strand, within CA264_14475at 3397.885 kb on + strand, within CA264_14475at 3397.932 kb on + strand, within CA264_14475at 3398.005 kb on + strand, within CA264_14475at 3398.013 kb on + strand, within CA264_14475at 3398.014 kb on - strand, within CA264_14475at 3398.038 kb on - strand, within CA264_14475at 3398.067 kb on - strand, within CA264_14475at 3398.186 kb on + strand, within CA264_14475at 3398.236 kb on - strand, within CA264_14475at 3398.283 kb on - strand, within CA264_14475at 3398.286 kb on + strand, within CA264_14475at 3398.287 kb on - strand, within CA264_14475at 3398.402 kb on - strand, within CA264_14475

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM
remove
3,396,575 + -0.7
3,396,648 + +0.6
3,396,659 + -1.0
3,396,697 + -0.2
3,396,727 + +0.9
3,396,727 + -0.4
3,396,728 - +0.0
3,396,729 + +1.2
3,396,729 + -1.2
3,396,730 - +0.6
3,396,730 - -0.6
3,396,730 - -1.2
3,396,730 - +0.3
3,396,733 + +1.2
3,396,733 + -0.9
3,396,734 - +0.2
3,396,780 - -0.1
3,396,791 - +0.1
3,396,850 - -0.5
3,396,879 + -0.1
3,396,951 + -0.2
3,397,005 + +0.7
3,397,090 - +0.0
3,397,090 - +0.0
3,397,146 + +0.2
3,397,147 - -0.9
3,397,148 + +0.8
3,397,149 - +0.3
3,397,149 - -0.0
3,397,149 - -0.0
3,397,152 + -0.4
3,397,153 - +0.3
3,397,154 + -0.5
3,397,155 - -0.2
3,397,160 + +0.3
3,397,210 + CA264_14470 0.12 -0.4
3,397,210 + CA264_14470 0.12 -0.5
3,397,211 - CA264_14470 0.12 -0.2
3,397,311 + CA264_14470 0.42 -1.7
3,397,315 + CA264_14470 0.43 -0.7
3,397,316 - CA264_14470 0.44 -0.6
3,397,320 + CA264_14470 0.45 -0.9
3,397,320 + CA264_14470 0.45 -2.2
3,397,353 - CA264_14470 0.55 +0.4
3,397,401 + CA264_14470 0.69 -0.2
3,397,414 + CA264_14470 0.73 -1.0
3,397,415 - CA264_14470 0.73 -1.2
3,397,524 + -0.2
3,397,527 + -0.6
3,397,529 + -0.1
3,397,792 + CA264_14475 0.20 -0.9
3,397,885 + CA264_14475 0.30 -0.6
3,397,932 + CA264_14475 0.35 +1.6
3,398,005 + CA264_14475 0.43 -0.6
3,398,013 + CA264_14475 0.44 -0.3
3,398,014 - CA264_14475 0.44 -0.0
3,398,038 - CA264_14475 0.46 -0.2
3,398,067 - CA264_14475 0.49 -0.6
3,398,186 + CA264_14475 0.62 +0.4
3,398,236 - CA264_14475 0.67 +0.2
3,398,283 - CA264_14475 0.72 +0.0
3,398,286 + CA264_14475 0.72 -1.1
3,398,287 - CA264_14475 0.72 -0.4
3,398,402 - CA264_14475 0.84 -0.4

Or see this region's nucleotide sequence