Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12825

Experiment: m.b. Chlorite 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12820 and CA264_12825 are separated by 64 nucleotidesCA264_12825 and CA264_12830 are separated by 163 nucleotides CA264_12820: CA264_12820 - hypothetical protein, at 2,988,591 to 2,989,745 _12820 CA264_12825: CA264_12825 - hypothetical protein, at 2,989,810 to 2,991,480 _12825 CA264_12830: CA264_12830 - hypothetical protein, at 2,991,644 to 2,993,305 _12830 Position (kb) 2989 2990 2991 2992Strain fitness (log2 ratio) -2 -1 0 1 2at 2988.825 kb on - strand, within CA264_12820at 2988.842 kb on - strand, within CA264_12820at 2988.849 kb on + strand, within CA264_12820at 2988.850 kb on - strand, within CA264_12820at 2988.850 kb on - strand, within CA264_12820at 2989.068 kb on - strand, within CA264_12820at 2989.095 kb on + strand, within CA264_12820at 2989.123 kb on + strand, within CA264_12820at 2989.124 kb on - strand, within CA264_12820at 2989.127 kb on + strand, within CA264_12820at 2989.127 kb on + strand, within CA264_12820at 2989.132 kb on + strand, within CA264_12820at 2989.132 kb on + strand, within CA264_12820at 2989.132 kb on + strand, within CA264_12820at 2989.133 kb on - strand, within CA264_12820at 2989.133 kb on - strand, within CA264_12820at 2989.185 kb on - strand, within CA264_12820at 2989.195 kb on + strand, within CA264_12820at 2989.195 kb on + strand, within CA264_12820at 2989.195 kb on + strand, within CA264_12820at 2989.196 kb on - strand, within CA264_12820at 2989.235 kb on - strand, within CA264_12820at 2989.290 kb on - strand, within CA264_12820at 2989.304 kb on + strand, within CA264_12820at 2989.322 kb on + strand, within CA264_12820at 2989.375 kb on + strand, within CA264_12820at 2989.410 kb on + strand, within CA264_12820at 2989.410 kb on + strand, within CA264_12820at 2989.411 kb on - strand, within CA264_12820at 2989.504 kb on + strand, within CA264_12820at 2989.504 kb on + strand, within CA264_12820at 2989.562 kb on - strand, within CA264_12820at 2989.696 kb on + strandat 2989.735 kb on + strandat 2989.748 kb on + strandat 2989.749 kb on - strandat 2989.749 kb on - strandat 2989.783 kb on + strandat 2989.817 kb on + strandat 2989.818 kb on - strandat 2989.821 kb on - strandat 2989.833 kb on + strandat 2989.865 kb on + strandat 2989.940 kb on - strandat 2989.996 kb on + strand, within CA264_12825at 2990.017 kb on + strand, within CA264_12825at 2990.017 kb on + strand, within CA264_12825at 2990.018 kb on - strand, within CA264_12825at 2990.018 kb on - strand, within CA264_12825at 2990.018 kb on - strand, within CA264_12825at 2990.018 kb on - strand, within CA264_12825at 2990.018 kb on - strand, within CA264_12825at 2990.019 kb on + strand, within CA264_12825at 2990.069 kb on + strand, within CA264_12825at 2990.069 kb on + strand, within CA264_12825at 2990.074 kb on - strand, within CA264_12825at 2990.074 kb on - strand, within CA264_12825at 2990.121 kb on + strand, within CA264_12825at 2990.135 kb on + strand, within CA264_12825at 2990.225 kb on + strand, within CA264_12825at 2990.327 kb on + strand, within CA264_12825at 2990.360 kb on + strand, within CA264_12825at 2990.360 kb on + strand, within CA264_12825at 2990.361 kb on - strand, within CA264_12825at 2990.536 kb on - strand, within CA264_12825at 2990.610 kb on + strand, within CA264_12825at 2990.636 kb on + strand, within CA264_12825at 2990.637 kb on - strand, within CA264_12825at 2990.637 kb on - strand, within CA264_12825at 2990.661 kb on - strand, within CA264_12825at 2990.719 kb on + strand, within CA264_12825at 2990.719 kb on + strand, within CA264_12825at 2990.720 kb on - strand, within CA264_12825at 2990.720 kb on - strand, within CA264_12825at 2990.723 kb on - strand, within CA264_12825at 2990.816 kb on - strand, within CA264_12825at 2990.816 kb on - strand, within CA264_12825at 2990.851 kb on + strand, within CA264_12825at 2990.851 kb on + strand, within CA264_12825at 2990.852 kb on - strand, within CA264_12825at 2990.852 kb on - strand, within CA264_12825at 2990.852 kb on - strand, within CA264_12825at 2990.946 kb on + strand, within CA264_12825at 2990.980 kb on + strand, within CA264_12825at 2990.981 kb on - strand, within CA264_12825at 2990.981 kb on - strand, within CA264_12825at 2990.981 kb on - strand, within CA264_12825at 2990.981 kb on - strand, within CA264_12825at 2990.983 kb on - strand, within CA264_12825at 2990.984 kb on + strand, within CA264_12825at 2991.026 kb on + strand, within CA264_12825at 2991.026 kb on + strand, within CA264_12825at 2991.026 kb on + strand, within CA264_12825at 2991.027 kb on - strand, within CA264_12825at 2991.478 kb on + strandat 2991.485 kb on - strandat 2991.499 kb on + strandat 2991.505 kb on + strandat 2991.506 kb on - strandat 2991.510 kb on + strandat 2991.542 kb on + strandat 2991.583 kb on + strandat 2991.583 kb on + strandat 2991.583 kb on + strandat 2991.583 kb on + strandat 2991.583 kb on + strandat 2991.584 kb on - strandat 2991.590 kb on + strandat 2991.590 kb on + strandat 2991.590 kb on + strandat 2991.652 kb on - strandat 2991.664 kb on + strandat 2991.665 kb on - strandat 2991.738 kb on + strandat 2991.762 kb on - strandat 2991.762 kb on - strandat 2991.778 kb on + strandat 2991.820 kb on + strand, within CA264_12830at 2991.821 kb on - strand, within CA264_12830at 2991.822 kb on + strand, within CA264_12830at 2991.850 kb on - strand, within CA264_12830at 2991.852 kb on - strand, within CA264_12830at 2991.852 kb on - strand, within CA264_12830at 2991.856 kb on + strand, within CA264_12830at 2991.857 kb on - strand, within CA264_12830at 2991.864 kb on - strand, within CA264_12830at 2991.864 kb on - strand, within CA264_12830at 2991.880 kb on - strand, within CA264_12830at 2991.931 kb on + strand, within CA264_12830at 2991.944 kb on - strand, within CA264_12830at 2991.945 kb on + strand, within CA264_12830at 2991.945 kb on + strand, within CA264_12830at 2991.945 kb on + strand, within CA264_12830at 2991.945 kb on + strand, within CA264_12830at 2991.946 kb on - strand, within CA264_12830at 2991.946 kb on - strand, within CA264_12830at 2992.007 kb on - strand, within CA264_12830at 2992.152 kb on - strand, within CA264_12830at 2992.256 kb on - strand, within CA264_12830at 2992.269 kb on + strand, within CA264_12830at 2992.270 kb on - strand, within CA264_12830at 2992.344 kb on + strand, within CA264_12830at 2992.361 kb on - strand, within CA264_12830at 2992.433 kb on - strand, within CA264_12830

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM
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2,988,825 - CA264_12820 0.20 +1.0
2,988,842 - CA264_12820 0.22 -0.9
2,988,849 + CA264_12820 0.22 +0.1
2,988,850 - CA264_12820 0.22 -0.1
2,988,850 - CA264_12820 0.22 -0.3
2,989,068 - CA264_12820 0.41 -0.1
2,989,095 + CA264_12820 0.44 +0.2
2,989,123 + CA264_12820 0.46 -0.4
2,989,124 - CA264_12820 0.46 -0.2
2,989,127 + CA264_12820 0.46 +0.6
2,989,127 + CA264_12820 0.46 +0.2
2,989,132 + CA264_12820 0.47 -1.0
2,989,132 + CA264_12820 0.47 +0.1
2,989,132 + CA264_12820 0.47 -0.4
2,989,133 - CA264_12820 0.47 -0.5
2,989,133 - CA264_12820 0.47 -0.3
2,989,185 - CA264_12820 0.51 -0.5
2,989,195 + CA264_12820 0.52 +1.7
2,989,195 + CA264_12820 0.52 +0.0
2,989,195 + CA264_12820 0.52 -1.5
2,989,196 - CA264_12820 0.52 -0.5
2,989,235 - CA264_12820 0.56 -0.4
2,989,290 - CA264_12820 0.61 -0.0
2,989,304 + CA264_12820 0.62 -0.8
2,989,322 + CA264_12820 0.63 -0.0
2,989,375 + CA264_12820 0.68 -0.2
2,989,410 + CA264_12820 0.71 +0.0
2,989,410 + CA264_12820 0.71 -0.1
2,989,411 - CA264_12820 0.71 -0.6
2,989,504 + CA264_12820 0.79 -1.2
2,989,504 + CA264_12820 0.79 -0.3
2,989,562 - CA264_12820 0.84 -0.8
2,989,696 + -0.4
2,989,735 + -0.9
2,989,748 + -0.6
2,989,749 - -0.6
2,989,749 - -0.3
2,989,783 + +1.0
2,989,817 + +0.2
2,989,818 - -1.2
2,989,821 - +0.7
2,989,833 + +0.2
2,989,865 + -0.6
2,989,940 - -0.2
2,989,996 + CA264_12825 0.11 -0.5
2,990,017 + CA264_12825 0.12 -0.7
2,990,017 + CA264_12825 0.12 -1.1
2,990,018 - CA264_12825 0.12 +0.1
2,990,018 - CA264_12825 0.12 -1.1
2,990,018 - CA264_12825 0.12 -0.8
2,990,018 - CA264_12825 0.12 +0.6
2,990,018 - CA264_12825 0.12 +0.0
2,990,019 + CA264_12825 0.13 -0.4
2,990,069 + CA264_12825 0.15 -0.6
2,990,069 + CA264_12825 0.15 +0.6
2,990,074 - CA264_12825 0.16 +0.0
2,990,074 - CA264_12825 0.16 -1.5
2,990,121 + CA264_12825 0.19 -0.1
2,990,135 + CA264_12825 0.19 +1.8
2,990,225 + CA264_12825 0.25 -1.3
2,990,327 + CA264_12825 0.31 -1.0
2,990,360 + CA264_12825 0.33 -0.2
2,990,360 + CA264_12825 0.33 +0.2
2,990,361 - CA264_12825 0.33 -0.1
2,990,536 - CA264_12825 0.43 -0.6
2,990,610 + CA264_12825 0.48 -1.8
2,990,636 + CA264_12825 0.49 +0.7
2,990,637 - CA264_12825 0.49 +1.2
2,990,637 - CA264_12825 0.49 -0.1
2,990,661 - CA264_12825 0.51 -0.2
2,990,719 + CA264_12825 0.54 -0.8
2,990,719 + CA264_12825 0.54 -0.8
2,990,720 - CA264_12825 0.54 -1.4
2,990,720 - CA264_12825 0.54 -0.4
2,990,723 - CA264_12825 0.55 -0.0
2,990,816 - CA264_12825 0.60 -0.8
2,990,816 - CA264_12825 0.60 -0.5
2,990,851 + CA264_12825 0.62 -0.2
2,990,851 + CA264_12825 0.62 -0.7
2,990,852 - CA264_12825 0.62 -0.6
2,990,852 - CA264_12825 0.62 -0.0
2,990,852 - CA264_12825 0.62 -1.0
2,990,946 + CA264_12825 0.68 -0.6
2,990,980 + CA264_12825 0.70 -0.2
2,990,981 - CA264_12825 0.70 -0.5
2,990,981 - CA264_12825 0.70 -0.4
2,990,981 - CA264_12825 0.70 -0.8
2,990,981 - CA264_12825 0.70 +0.4
2,990,983 - CA264_12825 0.70 -1.3
2,990,984 + CA264_12825 0.70 -0.1
2,991,026 + CA264_12825 0.73 -0.8
2,991,026 + CA264_12825 0.73 -0.0
2,991,026 + CA264_12825 0.73 +0.4
2,991,027 - CA264_12825 0.73 +0.0
2,991,478 + +1.0
2,991,485 - -1.2
2,991,499 + +0.1
2,991,505 + +0.0
2,991,506 - +0.6
2,991,510 + +0.1
2,991,542 + -0.4
2,991,583 + +0.1
2,991,583 + -0.6
2,991,583 + -0.0
2,991,583 + -0.5
2,991,583 + -1.4
2,991,584 - -1.9
2,991,590 + -0.3
2,991,590 + -0.2
2,991,590 + +0.1
2,991,652 - -2.3
2,991,664 + +0.8
2,991,665 - -0.3
2,991,738 + -0.6
2,991,762 - +0.2
2,991,762 - +0.0
2,991,778 + +1.2
2,991,820 + CA264_12830 0.11 +0.3
2,991,821 - CA264_12830 0.11 +0.8
2,991,822 + CA264_12830 0.11 +2.0
2,991,850 - CA264_12830 0.12 +0.5
2,991,852 - CA264_12830 0.13 +0.6
2,991,852 - CA264_12830 0.13 +0.1
2,991,856 + CA264_12830 0.13 +0.1
2,991,857 - CA264_12830 0.13 +0.5
2,991,864 - CA264_12830 0.13 +0.1
2,991,864 - CA264_12830 0.13 -0.9
2,991,880 - CA264_12830 0.14 +0.8
2,991,931 + CA264_12830 0.17 -0.7
2,991,944 - CA264_12830 0.18 +0.5
2,991,945 + CA264_12830 0.18 -0.6
2,991,945 + CA264_12830 0.18 -0.3
2,991,945 + CA264_12830 0.18 +0.0
2,991,945 + CA264_12830 0.18 -0.5
2,991,946 - CA264_12830 0.18 -0.5
2,991,946 - CA264_12830 0.18 -1.7
2,992,007 - CA264_12830 0.22 +0.3
2,992,152 - CA264_12830 0.31 -0.3
2,992,256 - CA264_12830 0.37 +0.7
2,992,269 + CA264_12830 0.38 +1.0
2,992,270 - CA264_12830 0.38 -1.1
2,992,344 + CA264_12830 0.42 +0.1
2,992,361 - CA264_12830 0.43 -0.2
2,992,433 - CA264_12830 0.47 -0.5

Or see this region's nucleotide sequence