Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12660

Experiment: m.b. Chlorite 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12650 and CA264_12655 overlap by 19 nucleotidesCA264_12655 and CA264_12660 are separated by 212 nucleotidesCA264_12660 and CA264_12665 overlap by 17 nucleotidesCA264_12665 and CA264_12670 are separated by 104 nucleotides CA264_12650: CA264_12650 - two-component sensor histidine kinase, at 2,952,907 to 2,954,157 _12650 CA264_12655: CA264_12655 - DNA-binding response regulator, at 2,954,139 to 2,954,819 _12655 CA264_12660: CA264_12660 - hypothetical protein, at 2,955,032 to 2,956,099 _12660 CA264_12665: CA264_12665 - phosphatase PAP2 family protein, at 2,956,083 to 2,956,769 _12665 CA264_12670: CA264_12670 - dolichol-phosphate mannosyltransferase, at 2,956,874 to 2,957,635 _12670 Position (kb) 2955 2956 2957Strain fitness (log2 ratio) -2 -1 0 1at 2954.071 kb on - strandat 2954.127 kb on + strandat 2954.159 kb on + strandat 2954.159 kb on + strandat 2954.160 kb on - strandat 2954.162 kb on - strandat 2954.184 kb on - strandat 2954.184 kb on - strandat 2954.188 kb on + strandat 2954.188 kb on + strandat 2954.189 kb on - strandat 2954.189 kb on - strandat 2954.272 kb on + strand, within CA264_12655at 2954.273 kb on - strand, within CA264_12655at 2954.277 kb on - strand, within CA264_12655at 2954.343 kb on + strand, within CA264_12655at 2954.592 kb on - strand, within CA264_12655at 2954.592 kb on - strand, within CA264_12655at 2954.664 kb on + strand, within CA264_12655at 2954.664 kb on + strand, within CA264_12655at 2954.686 kb on + strand, within CA264_12655at 2954.687 kb on - strand, within CA264_12655at 2954.693 kb on - strand, within CA264_12655at 2954.700 kb on + strand, within CA264_12655at 2954.700 kb on + strand, within CA264_12655at 2954.701 kb on - strand, within CA264_12655at 2954.705 kb on + strand, within CA264_12655at 2954.723 kb on - strand, within CA264_12655at 2954.762 kb on + strandat 2954.762 kb on + strandat 2954.762 kb on + strandat 2954.763 kb on - strandat 2954.764 kb on + strandat 2954.764 kb on + strandat 2954.764 kb on + strandat 2954.764 kb on + strandat 2954.764 kb on + strandat 2954.765 kb on - strandat 2954.765 kb on - strandat 2954.765 kb on - strandat 2954.765 kb on - strandat 2954.805 kb on + strandat 2954.820 kb on - strandat 2954.954 kb on + strandat 2954.996 kb on + strandat 2955.001 kb on - strandat 2955.001 kb on - strandat 2955.007 kb on + strandat 2955.032 kb on - strandat 2955.046 kb on - strandat 2955.046 kb on - strandat 2955.051 kb on + strandat 2955.150 kb on - strand, within CA264_12660at 2955.153 kb on - strand, within CA264_12660at 2955.170 kb on + strand, within CA264_12660at 2955.170 kb on + strand, within CA264_12660at 2955.172 kb on + strand, within CA264_12660at 2955.208 kb on + strand, within CA264_12660at 2955.208 kb on + strand, within CA264_12660at 2955.208 kb on + strand, within CA264_12660at 2955.209 kb on - strand, within CA264_12660at 2955.209 kb on - strand, within CA264_12660at 2955.209 kb on - strand, within CA264_12660at 2955.355 kb on - strand, within CA264_12660at 2955.361 kb on + strand, within CA264_12660at 2955.362 kb on - strand, within CA264_12660at 2955.479 kb on + strand, within CA264_12660at 2955.480 kb on - strand, within CA264_12660at 2955.486 kb on + strand, within CA264_12660at 2955.487 kb on - strand, within CA264_12660at 2955.571 kb on - strand, within CA264_12660at 2955.584 kb on + strand, within CA264_12660at 2955.665 kb on + strand, within CA264_12660at 2955.666 kb on - strand, within CA264_12660at 2955.668 kb on + strand, within CA264_12660at 2955.669 kb on - strand, within CA264_12660at 2955.669 kb on - strand, within CA264_12660at 2955.670 kb on + strand, within CA264_12660at 2955.670 kb on + strand, within CA264_12660at 2955.671 kb on - strand, within CA264_12660at 2955.671 kb on - strand, within CA264_12660at 2955.710 kb on - strand, within CA264_12660at 2955.712 kb on - strand, within CA264_12660at 2955.715 kb on + strand, within CA264_12660at 2955.715 kb on + strand, within CA264_12660at 2955.716 kb on - strand, within CA264_12660at 2955.716 kb on - strand, within CA264_12660at 2955.727 kb on + strand, within CA264_12660at 2955.746 kb on + strand, within CA264_12660at 2955.746 kb on + strand, within CA264_12660at 2955.746 kb on + strand, within CA264_12660at 2955.816 kb on - strand, within CA264_12660at 2955.827 kb on - strand, within CA264_12660at 2955.947 kb on + strand, within CA264_12660at 2955.948 kb on - strand, within CA264_12660at 2956.025 kb on - strandat 2956.036 kb on + strandat 2956.084 kb on + strandat 2956.085 kb on - strandat 2956.091 kb on - strandat 2956.102 kb on + strandat 2956.189 kb on + strand, within CA264_12665at 2956.190 kb on - strand, within CA264_12665at 2956.254 kb on - strand, within CA264_12665at 2956.300 kb on + strand, within CA264_12665at 2956.301 kb on - strand, within CA264_12665at 2956.301 kb on - strand, within CA264_12665at 2956.316 kb on - strand, within CA264_12665at 2956.405 kb on + strand, within CA264_12665at 2956.654 kb on + strand, within CA264_12665at 2956.654 kb on + strand, within CA264_12665at 2956.654 kb on + strand, within CA264_12665at 2956.726 kb on - strandat 2956.782 kb on - strandat 2956.845 kb on - strandat 2956.857 kb on + strandat 2956.858 kb on - strandat 2956.860 kb on - strandat 2956.923 kb on + strandat 2956.925 kb on + strandat 2956.925 kb on + strandat 2956.996 kb on + strand, within CA264_12670at 2956.997 kb on - strand, within CA264_12670at 2957.049 kb on + strand, within CA264_12670at 2957.050 kb on - strand, within CA264_12670at 2957.078 kb on + strand, within CA264_12670at 2957.084 kb on + strand, within CA264_12670at 2957.086 kb on + strand, within CA264_12670at 2957.086 kb on + strand, within CA264_12670

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM
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2,954,071 - -0.7
2,954,127 + +0.6
2,954,159 + +0.2
2,954,159 + +0.2
2,954,160 - -0.1
2,954,162 - -0.7
2,954,184 - +0.6
2,954,184 - -0.7
2,954,188 + +0.9
2,954,188 + -0.2
2,954,189 - -0.4
2,954,189 - +0.7
2,954,272 + CA264_12655 0.20 +0.1
2,954,273 - CA264_12655 0.20 +0.6
2,954,277 - CA264_12655 0.20 -0.6
2,954,343 + CA264_12655 0.30 -0.6
2,954,592 - CA264_12655 0.67 -0.4
2,954,592 - CA264_12655 0.67 -0.6
2,954,664 + CA264_12655 0.77 +0.2
2,954,664 + CA264_12655 0.77 -0.1
2,954,686 + CA264_12655 0.80 -0.6
2,954,687 - CA264_12655 0.80 -0.4
2,954,693 - CA264_12655 0.81 +0.9
2,954,700 + CA264_12655 0.82 +0.7
2,954,700 + CA264_12655 0.82 -1.3
2,954,701 - CA264_12655 0.83 +0.4
2,954,705 + CA264_12655 0.83 +0.1
2,954,723 - CA264_12655 0.86 -0.6
2,954,762 + +0.2
2,954,762 + -0.4
2,954,762 + +0.4
2,954,763 - -0.4
2,954,764 + +0.9
2,954,764 + +0.1
2,954,764 + -0.1
2,954,764 + +1.1
2,954,764 + -0.4
2,954,765 - -0.1
2,954,765 - +1.0
2,954,765 - +0.6
2,954,765 - -0.1
2,954,805 + +0.6
2,954,820 - -0.5
2,954,954 + +0.1
2,954,996 + -0.4
2,955,001 - -0.0
2,955,001 - +0.9
2,955,007 + -0.8
2,955,032 - +0.3
2,955,046 - -0.3
2,955,046 - -0.1
2,955,051 + +0.1
2,955,150 - CA264_12660 0.11 +0.3
2,955,153 - CA264_12660 0.11 +0.2
2,955,170 + CA264_12660 0.13 -0.9
2,955,170 + CA264_12660 0.13 -0.3
2,955,172 + CA264_12660 0.13 +0.9
2,955,208 + CA264_12660 0.16 -0.5
2,955,208 + CA264_12660 0.16 +0.5
2,955,208 + CA264_12660 0.16 +0.1
2,955,209 - CA264_12660 0.17 +0.3
2,955,209 - CA264_12660 0.17 +0.1
2,955,209 - CA264_12660 0.17 +0.1
2,955,355 - CA264_12660 0.30 -0.3
2,955,361 + CA264_12660 0.31 -0.8
2,955,362 - CA264_12660 0.31 +0.9
2,955,479 + CA264_12660 0.42 -0.0
2,955,480 - CA264_12660 0.42 -0.3
2,955,486 + CA264_12660 0.43 -0.2
2,955,487 - CA264_12660 0.43 -0.7
2,955,571 - CA264_12660 0.50 -0.5
2,955,584 + CA264_12660 0.52 -1.9
2,955,665 + CA264_12660 0.59 +0.2
2,955,666 - CA264_12660 0.59 -0.5
2,955,668 + CA264_12660 0.60 -0.5
2,955,669 - CA264_12660 0.60 +0.1
2,955,669 - CA264_12660 0.60 +0.4
2,955,670 + CA264_12660 0.60 -0.0
2,955,670 + CA264_12660 0.60 -0.5
2,955,671 - CA264_12660 0.60 +0.1
2,955,671 - CA264_12660 0.60 -0.1
2,955,710 - CA264_12660 0.63 -0.6
2,955,712 - CA264_12660 0.64 +0.6
2,955,715 + CA264_12660 0.64 +0.4
2,955,715 + CA264_12660 0.64 +0.4
2,955,716 - CA264_12660 0.64 +0.6
2,955,716 - CA264_12660 0.64 -0.4
2,955,727 + CA264_12660 0.65 +1.1
2,955,746 + CA264_12660 0.67 -1.0
2,955,746 + CA264_12660 0.67 +0.2
2,955,746 + CA264_12660 0.67 -0.9
2,955,816 - CA264_12660 0.73 -0.1
2,955,827 - CA264_12660 0.74 +0.9
2,955,947 + CA264_12660 0.86 +0.3
2,955,948 - CA264_12660 0.86 -0.7
2,956,025 - -1.7
2,956,036 + -0.2
2,956,084 + +0.0
2,956,085 - -0.2
2,956,091 - +0.7
2,956,102 + +0.3
2,956,189 + CA264_12665 0.15 -1.3
2,956,190 - CA264_12665 0.16 +0.5
2,956,254 - CA264_12665 0.25 -0.3
2,956,300 + CA264_12665 0.32 -0.5
2,956,301 - CA264_12665 0.32 -1.3
2,956,301 - CA264_12665 0.32 -0.8
2,956,316 - CA264_12665 0.34 -0.2
2,956,405 + CA264_12665 0.47 -0.3
2,956,654 + CA264_12665 0.83 +0.2
2,956,654 + CA264_12665 0.83 +0.2
2,956,654 + CA264_12665 0.83 +1.2
2,956,726 - +0.8
2,956,782 - -1.7
2,956,845 - -0.0
2,956,857 + +0.2
2,956,858 - +0.7
2,956,860 - +0.0
2,956,923 + +1.2
2,956,925 + +0.8
2,956,925 + -0.5
2,956,996 + CA264_12670 0.16 -1.4
2,956,997 - CA264_12670 0.16 -1.3
2,957,049 + CA264_12670 0.23 -2.1
2,957,050 - CA264_12670 0.23 -0.7
2,957,078 + CA264_12670 0.27 -0.8
2,957,084 + CA264_12670 0.28 -0.7
2,957,086 + CA264_12670 0.28 +0.3
2,957,086 + CA264_12670 0.28 -0.1

Or see this region's nucleotide sequence