Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12530

Experiment: m.b. Chlorite 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12525 and CA264_12530 are separated by 18 nucleotidesCA264_12530 and CA264_12535 are separated by 21 nucleotides CA264_12525: CA264_12525 - SusC/RagA family TonB-linked outer membrane protein, at 2,916,527 to 2,919,682 _12525 CA264_12530: CA264_12530 - RagB/SusD family nutrient uptake outer membrane protein, at 2,919,701 to 2,921,197 _12530 CA264_12535: CA264_12535 - hypothetical protein, at 2,921,219 to 2,922,622 _12535 Position (kb) 2919 2920 2921 2922Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2918.720 kb on - strand, within CA264_12525at 2918.739 kb on - strand, within CA264_12525at 2918.741 kb on - strand, within CA264_12525at 2918.773 kb on + strand, within CA264_12525at 2918.776 kb on + strand, within CA264_12525at 2918.786 kb on + strand, within CA264_12525at 2918.786 kb on + strand, within CA264_12525at 2918.790 kb on + strand, within CA264_12525at 2918.790 kb on + strand, within CA264_12525at 2918.791 kb on - strand, within CA264_12525at 2918.910 kb on - strand, within CA264_12525at 2918.914 kb on - strand, within CA264_12525at 2918.926 kb on - strand, within CA264_12525at 2919.019 kb on - strand, within CA264_12525at 2919.080 kb on + strand, within CA264_12525at 2919.085 kb on - strand, within CA264_12525at 2919.440 kb on + strandat 2919.441 kb on - strandat 2919.459 kb on - strandat 2919.470 kb on - strandat 2919.475 kb on - strandat 2919.488 kb on + strandat 2919.489 kb on - strandat 2919.565 kb on + strandat 2919.566 kb on - strandat 2919.578 kb on + strandat 2919.578 kb on + strandat 2919.635 kb on + strandat 2919.709 kb on + strandat 2919.710 kb on - strandat 2919.716 kb on - strandat 2919.717 kb on + strandat 2919.718 kb on - strandat 2919.718 kb on - strandat 2919.718 kb on - strandat 2919.840 kb on + strandat 2919.841 kb on - strandat 2919.841 kb on - strandat 2919.841 kb on - strandat 2919.842 kb on + strandat 2919.843 kb on - strandat 2919.843 kb on - strandat 2919.942 kb on - strand, within CA264_12530at 2920.010 kb on + strand, within CA264_12530at 2920.011 kb on - strand, within CA264_12530at 2920.011 kb on - strand, within CA264_12530at 2920.232 kb on + strand, within CA264_12530at 2920.233 kb on - strand, within CA264_12530at 2920.368 kb on + strand, within CA264_12530at 2920.375 kb on + strand, within CA264_12530at 2920.375 kb on + strand, within CA264_12530at 2920.384 kb on + strand, within CA264_12530at 2920.384 kb on + strand, within CA264_12530at 2920.385 kb on - strand, within CA264_12530at 2920.385 kb on - strand, within CA264_12530at 2920.458 kb on - strand, within CA264_12530at 2920.475 kb on + strand, within CA264_12530at 2920.476 kb on - strand, within CA264_12530at 2920.633 kb on + strand, within CA264_12530at 2920.712 kb on + strand, within CA264_12530at 2920.758 kb on - strand, within CA264_12530at 2920.784 kb on + strand, within CA264_12530at 2920.785 kb on - strand, within CA264_12530at 2920.866 kb on + strand, within CA264_12530at 2920.890 kb on - strand, within CA264_12530at 2921.161 kb on + strandat 2921.161 kb on + strandat 2921.196 kb on - strandat 2921.229 kb on + strandat 2921.229 kb on + strandat 2921.296 kb on + strandat 2921.297 kb on - strandat 2921.297 kb on - strandat 2921.322 kb on + strandat 2921.473 kb on - strand, within CA264_12535at 2921.484 kb on - strand, within CA264_12535at 2921.502 kb on - strand, within CA264_12535at 2921.502 kb on - strand, within CA264_12535at 2921.503 kb on + strand, within CA264_12535at 2921.504 kb on - strand, within CA264_12535at 2921.515 kb on + strand, within CA264_12535at 2921.557 kb on + strand, within CA264_12535at 2921.604 kb on - strand, within CA264_12535at 2921.743 kb on + strand, within CA264_12535at 2921.744 kb on - strand, within CA264_12535at 2921.755 kb on + strand, within CA264_12535at 2921.755 kb on + strand, within CA264_12535at 2921.755 kb on + strand, within CA264_12535at 2921.756 kb on - strand, within CA264_12535at 2921.759 kb on + strand, within CA264_12535at 2921.759 kb on + strand, within CA264_12535at 2921.760 kb on - strand, within CA264_12535at 2921.960 kb on + strand, within CA264_12535at 2921.961 kb on - strand, within CA264_12535at 2921.961 kb on - strand, within CA264_12535at 2921.970 kb on + strand, within CA264_12535at 2922.083 kb on + strand, within CA264_12535at 2922.101 kb on + strand, within CA264_12535

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM
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2,918,720 - CA264_12525 0.69 +0.9
2,918,739 - CA264_12525 0.70 -0.2
2,918,741 - CA264_12525 0.70 -0.6
2,918,773 + CA264_12525 0.71 +0.3
2,918,776 + CA264_12525 0.71 +0.6
2,918,786 + CA264_12525 0.72 +1.9
2,918,786 + CA264_12525 0.72 +0.4
2,918,790 + CA264_12525 0.72 -1.6
2,918,790 + CA264_12525 0.72 +0.3
2,918,791 - CA264_12525 0.72 +0.1
2,918,910 - CA264_12525 0.76 +0.3
2,918,914 - CA264_12525 0.76 -0.5
2,918,926 - CA264_12525 0.76 +0.7
2,919,019 - CA264_12525 0.79 +0.5
2,919,080 + CA264_12525 0.81 +0.6
2,919,085 - CA264_12525 0.81 +0.2
2,919,440 + -1.0
2,919,441 - -0.6
2,919,459 - -0.8
2,919,470 - +1.3
2,919,475 - -0.7
2,919,488 + -0.8
2,919,489 - -0.1
2,919,565 + -0.3
2,919,566 - +0.2
2,919,578 + +0.3
2,919,578 + +0.3
2,919,635 + +0.1
2,919,709 + +0.9
2,919,710 - -0.4
2,919,716 - -0.1
2,919,717 + -3.1
2,919,718 - -0.2
2,919,718 - +1.7
2,919,718 - +0.5
2,919,840 + +0.4
2,919,841 - +0.6
2,919,841 - +2.2
2,919,841 - -0.4
2,919,842 + +0.2
2,919,843 - +0.4
2,919,843 - -0.3
2,919,942 - CA264_12530 0.16 +0.4
2,920,010 + CA264_12530 0.21 -1.4
2,920,011 - CA264_12530 0.21 +0.3
2,920,011 - CA264_12530 0.21 +0.4
2,920,232 + CA264_12530 0.35 +2.1
2,920,233 - CA264_12530 0.36 +0.2
2,920,368 + CA264_12530 0.45 +1.0
2,920,375 + CA264_12530 0.45 +0.5
2,920,375 + CA264_12530 0.45 -0.8
2,920,384 + CA264_12530 0.46 +0.0
2,920,384 + CA264_12530 0.46 +0.0
2,920,385 - CA264_12530 0.46 +0.6
2,920,385 - CA264_12530 0.46 +0.2
2,920,458 - CA264_12530 0.51 -0.9
2,920,475 + CA264_12530 0.52 +0.2
2,920,476 - CA264_12530 0.52 -0.2
2,920,633 + CA264_12530 0.62 -0.3
2,920,712 + CA264_12530 0.68 +0.2
2,920,758 - CA264_12530 0.71 +1.4
2,920,784 + CA264_12530 0.72 +0.5
2,920,785 - CA264_12530 0.72 +0.3
2,920,866 + CA264_12530 0.78 -0.0
2,920,890 - CA264_12530 0.79 +0.1
2,921,161 + +0.3
2,921,161 + +0.6
2,921,196 - +0.2
2,921,229 + -0.4
2,921,229 + +0.4
2,921,296 + +1.6
2,921,297 - +0.2
2,921,297 - +0.9
2,921,322 + +0.8
2,921,473 - CA264_12535 0.18 -0.4
2,921,484 - CA264_12535 0.19 +1.4
2,921,502 - CA264_12535 0.20 -1.4
2,921,502 - CA264_12535 0.20 -0.1
2,921,503 + CA264_12535 0.20 +0.4
2,921,504 - CA264_12535 0.20 +0.5
2,921,515 + CA264_12535 0.21 +1.0
2,921,557 + CA264_12535 0.24 +0.3
2,921,604 - CA264_12535 0.27 +0.7
2,921,743 + CA264_12535 0.37 +0.7
2,921,744 - CA264_12535 0.37 -0.7
2,921,755 + CA264_12535 0.38 -0.1
2,921,755 + CA264_12535 0.38 +0.2
2,921,755 + CA264_12535 0.38 +1.5
2,921,756 - CA264_12535 0.38 -0.5
2,921,759 + CA264_12535 0.38 +0.1
2,921,759 + CA264_12535 0.38 +0.3
2,921,760 - CA264_12535 0.39 -0.8
2,921,960 + CA264_12535 0.53 -0.1
2,921,961 - CA264_12535 0.53 -0.0
2,921,961 - CA264_12535 0.53 -0.0
2,921,970 + CA264_12535 0.53 +0.2
2,922,083 + CA264_12535 0.62 +0.5
2,922,101 + CA264_12535 0.63 +0.4

Or see this region's nucleotide sequence