Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07720

Experiment: m.b. Chlorite 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07715 and CA264_07720 are separated by 77 nucleotidesCA264_07720 and CA264_07725 are separated by 3 nucleotides CA264_07715: CA264_07715 - SusD/RagB family nutrient-binding outer membrane lipoprotein, at 1,788,672 to 1,790,090 _07715 CA264_07720: CA264_07720 - gamma-glutamyl-phosphate reductase, at 1,790,168 to 1,791,415 _07720 CA264_07725: CA264_07725 - glutamate 5-kinase, at 1,791,419 to 1,792,510 _07725 Position (kb) 1790 1791 1792Strain fitness (log2 ratio) -3 -2 -1 0 1at 1789.240 kb on + strand, within CA264_07715at 1789.366 kb on - strand, within CA264_07715at 1789.507 kb on - strand, within CA264_07715at 1789.507 kb on - strand, within CA264_07715at 1789.629 kb on + strand, within CA264_07715at 1789.681 kb on + strand, within CA264_07715at 1789.682 kb on - strand, within CA264_07715at 1789.687 kb on - strand, within CA264_07715at 1789.749 kb on + strand, within CA264_07715at 1789.750 kb on - strand, within CA264_07715at 1789.772 kb on - strand, within CA264_07715at 1789.772 kb on - strand, within CA264_07715at 1789.772 kb on - strand, within CA264_07715at 1789.781 kb on + strand, within CA264_07715at 1789.822 kb on - strand, within CA264_07715at 1789.826 kb on + strand, within CA264_07715at 1789.826 kb on + strand, within CA264_07715at 1789.827 kb on - strand, within CA264_07715at 1789.827 kb on - strand, within CA264_07715at 1789.827 kb on - strand, within CA264_07715at 1789.890 kb on + strand, within CA264_07715at 1789.891 kb on - strand, within CA264_07715at 1789.891 kb on - strand, within CA264_07715at 1789.891 kb on - strand, within CA264_07715at 1789.891 kb on - strand, within CA264_07715at 1789.895 kb on + strand, within CA264_07715at 1789.896 kb on - strand, within CA264_07715at 1789.944 kb on + strand, within CA264_07715at 1789.950 kb on + strandat 1790.096 kb on + strandat 1790.096 kb on + strandat 1790.097 kb on - strandat 1790.097 kb on - strandat 1790.104 kb on - strandat 1790.150 kb on + strandat 1790.156 kb on + strandat 1790.156 kb on + strandat 1790.156 kb on + strandat 1790.208 kb on + strandat 1790.208 kb on + strandat 1790.305 kb on + strand, within CA264_07720at 1790.426 kb on - strand, within CA264_07720at 1790.535 kb on + strand, within CA264_07720at 1790.535 kb on + strandat 1790.536 kb on - strand, within CA264_07720at 1790.539 kb on + strand, within CA264_07720at 1790.557 kb on - strand, within CA264_07720at 1790.557 kb on - strand, within CA264_07720at 1790.743 kb on - strand, within CA264_07720at 1790.743 kb on - strand, within CA264_07720at 1790.743 kb on - strand, within CA264_07720at 1790.746 kb on + strand, within CA264_07720at 1790.746 kb on + strand, within CA264_07720at 1790.747 kb on - strand, within CA264_07720at 1790.747 kb on - strand, within CA264_07720at 1790.747 kb on - strand, within CA264_07720at 1790.803 kb on - strand, within CA264_07720at 1790.803 kb on - strand, within CA264_07720at 1790.803 kb on - strand, within CA264_07720at 1790.836 kb on + strand, within CA264_07720at 1790.836 kb on + strand, within CA264_07720at 1790.837 kb on - strand, within CA264_07720at 1790.839 kb on + strand, within CA264_07720at 1790.843 kb on + strand, within CA264_07720at 1790.843 kb on + strand, within CA264_07720at 1790.843 kb on + strand, within CA264_07720at 1790.847 kb on + strand, within CA264_07720at 1790.848 kb on - strand, within CA264_07720at 1790.914 kb on + strand, within CA264_07720at 1791.032 kb on - strand, within CA264_07720at 1791.046 kb on + strand, within CA264_07720at 1791.067 kb on - strand, within CA264_07720at 1791.203 kb on + strand, within CA264_07720at 1791.203 kb on + strand, within CA264_07720at 1791.234 kb on + strand, within CA264_07720at 1791.347 kb on - strandat 1791.360 kb on - strandat 1791.386 kb on + strandat 1791.416 kb on - strandat 1791.416 kb on - strandat 1791.432 kb on + strandat 1791.437 kb on - strandat 1791.440 kb on + strandat 1791.445 kb on - strandat 1791.451 kb on - strandat 1791.454 kb on + strandat 1791.690 kb on + strand, within CA264_07725at 1791.690 kb on + strand, within CA264_07725at 1791.691 kb on - strand, within CA264_07725at 1791.694 kb on + strand, within CA264_07725at 1791.694 kb on + strand, within CA264_07725at 1791.695 kb on - strand, within CA264_07725at 1791.814 kb on + strand, within CA264_07725at 1791.816 kb on + strand, within CA264_07725at 1791.817 kb on - strand, within CA264_07725at 1791.817 kb on - strand, within CA264_07725at 1791.817 kb on - strand, within CA264_07725at 1791.824 kb on + strand, within CA264_07725at 1791.824 kb on + strand, within CA264_07725at 1791.825 kb on - strand, within CA264_07725at 1791.825 kb on - strand, within CA264_07725at 1791.825 kb on - strand, within CA264_07725at 1791.889 kb on + strand, within CA264_07725at 1791.909 kb on + strand, within CA264_07725at 1791.910 kb on - strand, within CA264_07725at 1791.984 kb on + strand, within CA264_07725at 1791.985 kb on - strand, within CA264_07725at 1791.985 kb on - strand, within CA264_07725at 1792.120 kb on + strand, within CA264_07725at 1792.248 kb on + strand, within CA264_07725at 1792.248 kb on + strand, within CA264_07725at 1792.249 kb on - strand, within CA264_07725at 1792.249 kb on - strand, within CA264_07725at 1792.256 kb on + strand, within CA264_07725at 1792.261 kb on + strand, within CA264_07725at 1792.262 kb on - strand, within CA264_07725at 1792.266 kb on - strand, within CA264_07725at 1792.323 kb on - strand, within CA264_07725

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM
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1,789,240 + CA264_07715 0.40 +0.2
1,789,366 - CA264_07715 0.49 +0.8
1,789,507 - CA264_07715 0.59 -0.5
1,789,507 - CA264_07715 0.59 +0.3
1,789,629 + CA264_07715 0.67 -0.1
1,789,681 + CA264_07715 0.71 -0.1
1,789,682 - CA264_07715 0.71 -0.8
1,789,687 - CA264_07715 0.72 +0.0
1,789,749 + CA264_07715 0.76 -0.2
1,789,750 - CA264_07715 0.76 +0.1
1,789,772 - CA264_07715 0.78 +0.5
1,789,772 - CA264_07715 0.78 +0.8
1,789,772 - CA264_07715 0.78 -3.3
1,789,781 + CA264_07715 0.78 -0.4
1,789,822 - CA264_07715 0.81 +1.2
1,789,826 + CA264_07715 0.81 +0.9
1,789,826 + CA264_07715 0.81 +0.6
1,789,827 - CA264_07715 0.81 +0.2
1,789,827 - CA264_07715 0.81 -0.5
1,789,827 - CA264_07715 0.81 +0.9
1,789,890 + CA264_07715 0.86 -0.5
1,789,891 - CA264_07715 0.86 +0.7
1,789,891 - CA264_07715 0.86 +0.1
1,789,891 - CA264_07715 0.86 -1.0
1,789,891 - CA264_07715 0.86 -0.2
1,789,895 + CA264_07715 0.86 -0.5
1,789,896 - CA264_07715 0.86 -2.4
1,789,944 + CA264_07715 0.90 +0.4
1,789,950 + +1.2
1,790,096 + +0.2
1,790,096 + +0.4
1,790,097 - -1.0
1,790,097 - -0.6
1,790,104 - -0.2
1,790,150 + +0.3
1,790,156 + +0.1
1,790,156 + -0.0
1,790,156 + +0.5
1,790,208 + -1.4
1,790,208 + +0.2
1,790,305 + CA264_07720 0.11 +0.0
1,790,426 - CA264_07720 0.21 +0.3
1,790,535 + CA264_07720 0.29 -0.4
1,790,535 + +1.1
1,790,536 - CA264_07720 0.29 -0.5
1,790,539 + CA264_07720 0.30 -0.2
1,790,557 - CA264_07720 0.31 -0.5
1,790,557 - CA264_07720 0.31 -0.5
1,790,743 - CA264_07720 0.46 -0.5
1,790,743 - CA264_07720 0.46 -0.9
1,790,743 - CA264_07720 0.46 -0.7
1,790,746 + CA264_07720 0.46 -0.4
1,790,746 + CA264_07720 0.46 -0.5
1,790,747 - CA264_07720 0.46 +0.3
1,790,747 - CA264_07720 0.46 -0.3
1,790,747 - CA264_07720 0.46 -0.9
1,790,803 - CA264_07720 0.51 -0.9
1,790,803 - CA264_07720 0.51 +0.2
1,790,803 - CA264_07720 0.51 -0.7
1,790,836 + CA264_07720 0.54 -0.7
1,790,836 + CA264_07720 0.54 -0.2
1,790,837 - CA264_07720 0.54 -0.8
1,790,839 + CA264_07720 0.54 -0.3
1,790,843 + CA264_07720 0.54 -0.2
1,790,843 + CA264_07720 0.54 -0.6
1,790,843 + CA264_07720 0.54 -1.4
1,790,847 + CA264_07720 0.54 -1.5
1,790,848 - CA264_07720 0.54 -0.1
1,790,914 + CA264_07720 0.60 +0.1
1,791,032 - CA264_07720 0.69 -2.3
1,791,046 + CA264_07720 0.70 +0.5
1,791,067 - CA264_07720 0.72 +0.2
1,791,203 + CA264_07720 0.83 -0.6
1,791,203 + CA264_07720 0.83 +0.2
1,791,234 + CA264_07720 0.85 -0.3
1,791,347 - +0.1
1,791,360 - +0.0
1,791,386 + -0.6
1,791,416 - -0.6
1,791,416 - -0.7
1,791,432 + +0.1
1,791,437 - -0.2
1,791,440 + -0.3
1,791,445 - -0.5
1,791,451 - -0.4
1,791,454 + -0.2
1,791,690 + CA264_07725 0.25 +0.6
1,791,690 + CA264_07725 0.25 +0.6
1,791,691 - CA264_07725 0.25 +1.4
1,791,694 + CA264_07725 0.25 +0.5
1,791,694 + CA264_07725 0.25 +0.3
1,791,695 - CA264_07725 0.25 +1.1
1,791,814 + CA264_07725 0.36 +0.9
1,791,816 + CA264_07725 0.36 +1.5
1,791,817 - CA264_07725 0.36 -0.2
1,791,817 - CA264_07725 0.36 -0.0
1,791,817 - CA264_07725 0.36 +0.3
1,791,824 + CA264_07725 0.37 -0.0
1,791,824 + CA264_07725 0.37 +0.2
1,791,825 - CA264_07725 0.37 +0.3
1,791,825 - CA264_07725 0.37 -0.4
1,791,825 - CA264_07725 0.37 -0.4
1,791,889 + CA264_07725 0.43 -0.7
1,791,909 + CA264_07725 0.45 +0.5
1,791,910 - CA264_07725 0.45 -0.4
1,791,984 + CA264_07725 0.52 +0.3
1,791,985 - CA264_07725 0.52 -0.4
1,791,985 - CA264_07725 0.52 -1.0
1,792,120 + CA264_07725 0.64 +0.3
1,792,248 + CA264_07725 0.76 -0.1
1,792,248 + CA264_07725 0.76 +0.1
1,792,249 - CA264_07725 0.76 -0.1
1,792,249 - CA264_07725 0.76 -0.7
1,792,256 + CA264_07725 0.77 -0.2
1,792,261 + CA264_07725 0.77 +0.5
1,792,262 - CA264_07725 0.77 +0.7
1,792,266 - CA264_07725 0.78 +0.4
1,792,323 - CA264_07725 0.83 -0.5

Or see this region's nucleotide sequence