Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06500

Experiment: m.b. Chlorite 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06490 and CA264_06495 are separated by 226 nucleotidesCA264_06495 and CA264_06500 are separated by 356 nucleotidesCA264_06500 and CA264_06505 are separated by 53 nucleotides CA264_06490: CA264_06490 - DNA topoisomerase I, at 1,499,629 to 1,500,714 _06490 CA264_06495: CA264_06495 - hypothetical protein, at 1,500,941 to 1,501,345 _06495 CA264_06500: CA264_06500 - peptidase M48, at 1,501,702 to 1,502,535 _06500 CA264_06505: CA264_06505 - hypothetical protein, at 1,502,589 to 1,503,731 _06505 Position (kb) 1501 1502 1503Strain fitness (log2 ratio) -2 -1 0 1 2at 1500.754 kb on + strandat 1500.783 kb on + strandat 1500.783 kb on + strandat 1500.784 kb on - strandat 1500.810 kb on - strandat 1500.810 kb on - strandat 1500.813 kb on + strandat 1500.813 kb on + strandat 1500.814 kb on - strandat 1500.814 kb on - strandat 1500.878 kb on + strandat 1500.879 kb on - strandat 1500.926 kb on + strandat 1500.931 kb on - strandat 1500.938 kb on + strandat 1500.939 kb on - strandat 1501.045 kb on + strand, within CA264_06495at 1501.045 kb on + strand, within CA264_06495at 1501.046 kb on - strand, within CA264_06495at 1501.046 kb on - strand, within CA264_06495at 1501.048 kb on + strand, within CA264_06495at 1501.049 kb on - strand, within CA264_06495at 1501.120 kb on + strand, within CA264_06495at 1501.181 kb on + strand, within CA264_06495at 1501.201 kb on + strand, within CA264_06495at 1501.206 kb on + strand, within CA264_06495at 1501.206 kb on + strand, within CA264_06495at 1501.207 kb on - strand, within CA264_06495at 1501.297 kb on + strand, within CA264_06495at 1501.330 kb on - strandat 1501.330 kb on - strandat 1501.431 kb on - strandat 1501.497 kb on - strandat 1501.628 kb on - strandat 1501.631 kb on + strandat 1501.631 kb on + strandat 1501.631 kb on + strandat 1501.631 kb on + strandat 1501.651 kb on + strandat 1501.652 kb on - strandat 1501.811 kb on + strand, within CA264_06500at 1501.811 kb on + strand, within CA264_06500at 1501.811 kb on + strand, within CA264_06500at 1501.812 kb on - strand, within CA264_06500at 1501.812 kb on - strand, within CA264_06500at 1501.812 kb on - strand, within CA264_06500at 1501.812 kb on - strand, within CA264_06500at 1501.930 kb on - strand, within CA264_06500at 1501.930 kb on - strand, within CA264_06500at 1501.933 kb on - strand, within CA264_06500at 1501.933 kb on - strand, within CA264_06500at 1501.934 kb on + strand, within CA264_06500at 1501.934 kb on + strand, within CA264_06500at 1501.934 kb on + strand, within CA264_06500at 1501.946 kb on + strand, within CA264_06500at 1501.947 kb on - strand, within CA264_06500at 1501.966 kb on + strand, within CA264_06500at 1501.967 kb on - strand, within CA264_06500at 1501.967 kb on - strand, within CA264_06500at 1501.968 kb on + strand, within CA264_06500at 1502.051 kb on - strand, within CA264_06500at 1502.106 kb on - strand, within CA264_06500at 1502.148 kb on - strand, within CA264_06500at 1502.156 kb on + strand, within CA264_06500at 1502.269 kb on - strand, within CA264_06500at 1502.329 kb on + strand, within CA264_06500at 1502.329 kb on + strand, within CA264_06500at 1502.330 kb on - strand, within CA264_06500at 1502.330 kb on - strand, within CA264_06500at 1502.332 kb on + strand, within CA264_06500at 1502.361 kb on + strand, within CA264_06500at 1502.448 kb on - strand, within CA264_06500at 1502.448 kb on - strand, within CA264_06500at 1502.623 kb on + strandat 1502.624 kb on - strandat 1502.627 kb on + strandat 1502.627 kb on + strandat 1502.628 kb on - strandat 1502.766 kb on - strand, within CA264_06505at 1502.823 kb on + strand, within CA264_06505at 1502.824 kb on - strand, within CA264_06505at 1502.824 kb on - strand, within CA264_06505at 1502.824 kb on - strand, within CA264_06505at 1502.963 kb on + strand, within CA264_06505at 1502.964 kb on - strand, within CA264_06505at 1502.984 kb on - strand, within CA264_06505at 1503.069 kb on + strand, within CA264_06505at 1503.070 kb on - strand, within CA264_06505at 1503.145 kb on + strand, within CA264_06505at 1503.146 kb on - strand, within CA264_06505at 1503.250 kb on - strand, within CA264_06505at 1503.283 kb on + strand, within CA264_06505at 1503.284 kb on - strand, within CA264_06505at 1503.284 kb on - strand, within CA264_06505at 1503.284 kb on - strand, within CA264_06505at 1503.288 kb on + strand, within CA264_06505at 1503.312 kb on - strand, within CA264_06505at 1503.393 kb on + strand, within CA264_06505at 1503.393 kb on + strand, within CA264_06505at 1503.394 kb on - strand, within CA264_06505at 1503.396 kb on - strand, within CA264_06505at 1503.435 kb on - strand, within CA264_06505at 1503.526 kb on - strand, within CA264_06505at 1503.526 kb on - strand, within CA264_06505

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM
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1,500,754 + -0.1
1,500,783 + +0.4
1,500,783 + -0.4
1,500,784 - -0.5
1,500,810 - +0.3
1,500,810 - -0.2
1,500,813 + +0.1
1,500,813 + +1.1
1,500,814 - -0.9
1,500,814 - +0.0
1,500,878 + -0.6
1,500,879 - -0.2
1,500,926 + -0.1
1,500,931 - -0.0
1,500,938 + -0.8
1,500,939 - -1.2
1,501,045 + CA264_06495 0.26 -0.5
1,501,045 + CA264_06495 0.26 -0.6
1,501,046 - CA264_06495 0.26 -0.9
1,501,046 - CA264_06495 0.26 -1.8
1,501,048 + CA264_06495 0.26 -1.0
1,501,049 - CA264_06495 0.27 -2.2
1,501,120 + CA264_06495 0.44 -1.7
1,501,181 + CA264_06495 0.59 -2.0
1,501,201 + CA264_06495 0.64 -1.1
1,501,206 + CA264_06495 0.65 -0.7
1,501,206 + CA264_06495 0.65 -1.4
1,501,207 - CA264_06495 0.66 -0.2
1,501,297 + CA264_06495 0.88 -0.9
1,501,330 - -1.0
1,501,330 - -1.8
1,501,431 - -0.5
1,501,497 - -2.3
1,501,628 - +0.0
1,501,631 + -0.3
1,501,631 + -0.4
1,501,631 + -0.5
1,501,631 + -0.8
1,501,651 + +0.7
1,501,652 - +0.6
1,501,811 + CA264_06500 0.13 -1.7
1,501,811 + CA264_06500 0.13 +0.0
1,501,811 + CA264_06500 0.13 -0.2
1,501,812 - CA264_06500 0.13 -0.1
1,501,812 - CA264_06500 0.13 -0.6
1,501,812 - CA264_06500 0.13 -1.2
1,501,812 - CA264_06500 0.13 -0.0
1,501,930 - CA264_06500 0.27 +0.3
1,501,930 - CA264_06500 0.27 -0.4
1,501,933 - CA264_06500 0.28 -0.2
1,501,933 - CA264_06500 0.28 +0.4
1,501,934 + CA264_06500 0.28 -0.8
1,501,934 + CA264_06500 0.28 +1.3
1,501,934 + CA264_06500 0.28 -0.1
1,501,946 + CA264_06500 0.29 -0.0
1,501,947 - CA264_06500 0.29 -0.3
1,501,966 + CA264_06500 0.32 +2.1
1,501,967 - CA264_06500 0.32 -0.9
1,501,967 - CA264_06500 0.32 -0.5
1,501,968 + CA264_06500 0.32 -1.5
1,502,051 - CA264_06500 0.42 -1.4
1,502,106 - CA264_06500 0.48 +0.9
1,502,148 - CA264_06500 0.53 +0.2
1,502,156 + CA264_06500 0.54 -0.1
1,502,269 - CA264_06500 0.68 -0.5
1,502,329 + CA264_06500 0.75 -1.5
1,502,329 + CA264_06500 0.75 +0.1
1,502,330 - CA264_06500 0.75 +0.2
1,502,330 - CA264_06500 0.75 +0.0
1,502,332 + CA264_06500 0.76 -0.4
1,502,361 + CA264_06500 0.79 +0.4
1,502,448 - CA264_06500 0.89 -1.9
1,502,448 - CA264_06500 0.89 +1.1
1,502,623 + -0.4
1,502,624 - +0.6
1,502,627 + +0.4
1,502,627 + +1.3
1,502,628 - +1.5
1,502,766 - CA264_06505 0.15 -0.9
1,502,823 + CA264_06505 0.20 -0.8
1,502,824 - CA264_06505 0.21 -0.4
1,502,824 - CA264_06505 0.21 +0.1
1,502,824 - CA264_06505 0.21 +0.1
1,502,963 + CA264_06505 0.33 +0.2
1,502,964 - CA264_06505 0.33 -0.7
1,502,984 - CA264_06505 0.35 -0.0
1,503,069 + CA264_06505 0.42 +0.8
1,503,070 - CA264_06505 0.42 +0.8
1,503,145 + CA264_06505 0.49 -0.7
1,503,146 - CA264_06505 0.49 +0.5
1,503,250 - CA264_06505 0.58 -0.2
1,503,283 + CA264_06505 0.61 +0.2
1,503,284 - CA264_06505 0.61 -0.9
1,503,284 - CA264_06505 0.61 +1.0
1,503,284 - CA264_06505 0.61 -0.3
1,503,288 + CA264_06505 0.61 -0.3
1,503,312 - CA264_06505 0.63 -0.6
1,503,393 + CA264_06505 0.70 -0.7
1,503,393 + CA264_06505 0.70 -0.2
1,503,394 - CA264_06505 0.70 -0.3
1,503,396 - CA264_06505 0.71 -0.4
1,503,435 - CA264_06505 0.74 +0.9
1,503,526 - CA264_06505 0.82 +1.0
1,503,526 - CA264_06505 0.82 -0.3

Or see this region's nucleotide sequence