Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06415

Experiment: m.b. Chlorite 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06405 and CA264_06410 are separated by 87 nucleotidesCA264_06410 and CA264_06415 are separated by 71 nucleotidesCA264_06415 and CA264_06420 are separated by 91 nucleotidesCA264_06420 and CA264_06425 are separated by 71 nucleotides CA264_06405: CA264_06405 - VWA domain-containing protein, at 1,486,830 to 1,487,879 _06405 CA264_06410: CA264_06410 - YggS family pyridoxal phosphate enzyme, at 1,487,967 to 1,488,650 _06410 CA264_06415: CA264_06415 - glycerophosphodiester phosphodiesterase, at 1,488,722 to 1,489,639 _06415 CA264_06420: CA264_06420 - hypothetical protein, at 1,489,731 to 1,490,177 _06420 CA264_06425: CA264_06425 - DUF423 domain-containing protein, at 1,490,249 to 1,490,626 _06425 Position (kb) 1488 1489 1490Strain fitness (log2 ratio) -2 -1 0 1at 1487.797 kb on + strandat 1487.828 kb on + strandat 1487.930 kb on - strandat 1487.930 kb on - strandat 1487.930 kb on - strandat 1487.946 kb on - strandat 1487.966 kb on + strandat 1487.976 kb on - strandat 1487.984 kb on + strandat 1487.985 kb on - strandat 1487.985 kb on - strandat 1487.989 kb on + strandat 1488.075 kb on + strand, within CA264_06410at 1488.075 kb on + strand, within CA264_06410at 1488.107 kb on + strand, within CA264_06410at 1488.193 kb on + strand, within CA264_06410at 1488.194 kb on - strand, within CA264_06410at 1488.198 kb on + strand, within CA264_06410at 1488.198 kb on + strand, within CA264_06410at 1488.198 kb on + strand, within CA264_06410at 1488.215 kb on - strand, within CA264_06410at 1488.218 kb on + strand, within CA264_06410at 1488.219 kb on - strand, within CA264_06410at 1488.264 kb on - strand, within CA264_06410at 1488.299 kb on + strand, within CA264_06410at 1488.342 kb on + strand, within CA264_06410at 1488.343 kb on - strand, within CA264_06410at 1488.377 kb on - strand, within CA264_06410at 1488.391 kb on - strand, within CA264_06410at 1488.391 kb on - strand, within CA264_06410at 1488.405 kb on + strand, within CA264_06410at 1488.433 kb on + strand, within CA264_06410at 1488.639 kb on + strandat 1488.640 kb on - strandat 1488.644 kb on + strandat 1488.645 kb on - strandat 1488.649 kb on - strandat 1488.672 kb on - strandat 1488.672 kb on - strandat 1488.672 kb on - strandat 1488.679 kb on - strandat 1488.683 kb on - strandat 1488.713 kb on - strandat 1488.713 kb on - strandat 1488.713 kb on - strandat 1488.713 kb on - strandat 1488.713 kb on - strandat 1488.716 kb on + strandat 1488.717 kb on - strandat 1488.717 kb on - strandat 1488.717 kb on - strandat 1488.721 kb on + strandat 1488.808 kb on - strandat 1488.817 kb on + strand, within CA264_06415at 1488.981 kb on - strand, within CA264_06415at 1489.023 kb on + strand, within CA264_06415at 1489.023 kb on + strand, within CA264_06415at 1489.024 kb on - strand, within CA264_06415at 1489.055 kb on + strand, within CA264_06415at 1489.067 kb on + strand, within CA264_06415at 1489.067 kb on + strand, within CA264_06415at 1489.108 kb on + strand, within CA264_06415at 1489.109 kb on - strand, within CA264_06415at 1489.143 kb on - strand, within CA264_06415at 1489.143 kb on - strand, within CA264_06415at 1489.144 kb on + strand, within CA264_06415at 1489.145 kb on - strand, within CA264_06415at 1489.260 kb on - strand, within CA264_06415at 1489.333 kb on + strand, within CA264_06415at 1489.428 kb on + strand, within CA264_06415at 1489.429 kb on - strand, within CA264_06415at 1489.481 kb on + strand, within CA264_06415at 1489.482 kb on - strand, within CA264_06415at 1489.482 kb on - strand, within CA264_06415at 1489.537 kb on + strand, within CA264_06415at 1489.614 kb on - strandat 1489.635 kb on + strandat 1489.635 kb on + strandat 1489.683 kb on + strandat 1489.703 kb on + strandat 1489.707 kb on + strandat 1489.707 kb on + strandat 1489.717 kb on - strandat 1489.765 kb on - strandat 1489.765 kb on - strandat 1489.862 kb on + strand, within CA264_06420at 1489.933 kb on - strand, within CA264_06420at 1489.989 kb on + strand, within CA264_06420at 1489.989 kb on + strand, within CA264_06420at 1489.989 kb on + strand, within CA264_06420at 1489.989 kb on + strand, within CA264_06420at 1489.990 kb on - strand, within CA264_06420at 1490.062 kb on + strand, within CA264_06420at 1490.062 kb on + strand, within CA264_06420at 1490.121 kb on + strand, within CA264_06420at 1490.152 kb on + strandat 1490.156 kb on - strandat 1490.175 kb on + strandat 1490.205 kb on + strandat 1490.219 kb on + strandat 1490.219 kb on + strandat 1490.220 kb on - strandat 1490.223 kb on + strandat 1490.225 kb on + strandat 1490.232 kb on + strandat 1490.266 kb on - strandat 1490.297 kb on - strand, within CA264_06425at 1490.308 kb on - strand, within CA264_06425at 1490.396 kb on + strand, within CA264_06425at 1490.397 kb on - strand, within CA264_06425at 1490.401 kb on + strand, within CA264_06425at 1490.402 kb on - strand, within CA264_06425at 1490.513 kb on + strand, within CA264_06425at 1490.514 kb on - strand, within CA264_06425at 1490.624 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM
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1,487,797 + -1.4
1,487,828 + -1.7
1,487,930 - -0.7
1,487,930 - -0.6
1,487,930 - -0.1
1,487,946 - +0.4
1,487,966 + -0.7
1,487,976 - -0.2
1,487,984 + -0.0
1,487,985 - +1.4
1,487,985 - +0.3
1,487,989 + +0.4
1,488,075 + CA264_06410 0.16 +0.1
1,488,075 + CA264_06410 0.16 +0.4
1,488,107 + CA264_06410 0.20 -0.2
1,488,193 + CA264_06410 0.33 +0.9
1,488,194 - CA264_06410 0.33 +0.8
1,488,198 + CA264_06410 0.34 -0.4
1,488,198 + CA264_06410 0.34 -0.3
1,488,198 + CA264_06410 0.34 +0.1
1,488,215 - CA264_06410 0.36 -1.1
1,488,218 + CA264_06410 0.37 -0.4
1,488,219 - CA264_06410 0.37 +0.9
1,488,264 - CA264_06410 0.43 +0.5
1,488,299 + CA264_06410 0.49 +0.8
1,488,342 + CA264_06410 0.55 +0.2
1,488,343 - CA264_06410 0.55 -0.4
1,488,377 - CA264_06410 0.60 -1.2
1,488,391 - CA264_06410 0.62 +0.5
1,488,391 - CA264_06410 0.62 +0.3
1,488,405 + CA264_06410 0.64 +1.5
1,488,433 + CA264_06410 0.68 -0.9
1,488,639 + +1.5
1,488,640 - +0.2
1,488,644 + +0.2
1,488,645 - -0.3
1,488,649 - +0.1
1,488,672 - -0.1
1,488,672 - -1.4
1,488,672 - -0.6
1,488,679 - -0.3
1,488,683 - -0.6
1,488,713 - +0.3
1,488,713 - -0.5
1,488,713 - -0.5
1,488,713 - +0.4
1,488,713 - -0.2
1,488,716 + -0.7
1,488,717 - +0.9
1,488,717 - +0.5
1,488,717 - +0.4
1,488,721 + +0.1
1,488,808 - -0.4
1,488,817 + CA264_06415 0.10 -0.4
1,488,981 - CA264_06415 0.28 -0.4
1,489,023 + CA264_06415 0.33 -0.8
1,489,023 + CA264_06415 0.33 -1.2
1,489,024 - CA264_06415 0.33 +0.4
1,489,055 + CA264_06415 0.36 -0.5
1,489,067 + CA264_06415 0.38 -2.2
1,489,067 + CA264_06415 0.38 +1.1
1,489,108 + CA264_06415 0.42 +0.1
1,489,109 - CA264_06415 0.42 -0.9
1,489,143 - CA264_06415 0.46 +0.1
1,489,143 - CA264_06415 0.46 -1.2
1,489,144 + CA264_06415 0.46 -0.1
1,489,145 - CA264_06415 0.46 +0.3
1,489,260 - CA264_06415 0.59 +0.1
1,489,333 + CA264_06415 0.67 -1.7
1,489,428 + CA264_06415 0.77 -1.3
1,489,429 - CA264_06415 0.77 -0.3
1,489,481 + CA264_06415 0.83 +0.1
1,489,482 - CA264_06415 0.83 -0.3
1,489,482 - CA264_06415 0.83 +0.9
1,489,537 + CA264_06415 0.89 -0.5
1,489,614 - +0.3
1,489,635 + -0.3
1,489,635 + +0.0
1,489,683 + -0.5
1,489,703 + -1.2
1,489,707 + +0.2
1,489,707 + -0.9
1,489,717 - +0.4
1,489,765 - -0.0
1,489,765 - -0.3
1,489,862 + CA264_06420 0.29 -0.3
1,489,933 - CA264_06420 0.45 +1.3
1,489,989 + CA264_06420 0.58 -0.4
1,489,989 + CA264_06420 0.58 -0.1
1,489,989 + CA264_06420 0.58 +0.8
1,489,989 + CA264_06420 0.58 -1.7
1,489,990 - CA264_06420 0.58 +1.6
1,490,062 + CA264_06420 0.74 -0.8
1,490,062 + CA264_06420 0.74 +0.6
1,490,121 + CA264_06420 0.87 +0.3
1,490,152 + +0.1
1,490,156 - -0.6
1,490,175 + -0.1
1,490,205 + -0.7
1,490,219 + +0.1
1,490,219 + -0.7
1,490,220 - -1.0
1,490,223 + -0.2
1,490,225 + +0.1
1,490,232 + -0.5
1,490,266 - -0.3
1,490,297 - CA264_06425 0.13 +0.5
1,490,308 - CA264_06425 0.16 -0.1
1,490,396 + CA264_06425 0.39 +0.3
1,490,397 - CA264_06425 0.39 +0.0
1,490,401 + CA264_06425 0.40 +0.1
1,490,402 - CA264_06425 0.40 -0.0
1,490,513 + CA264_06425 0.70 -0.7
1,490,514 - CA264_06425 0.70 -0.2
1,490,624 + +0.2

Or see this region's nucleotide sequence