Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05480

Experiment: m.b. Chlorite 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05470 and CA264_05475 are separated by 43 nucleotidesCA264_05475 and CA264_05480 are separated by 84 nucleotidesCA264_05480 and CA264_05485 are separated by 249 nucleotides CA264_05470: CA264_05470 - hypothetical protein, at 1,271,028 to 1,271,486 _05470 CA264_05475: CA264_05475 - MBL fold metallo-hydrolase, at 1,271,530 to 1,272,294 _05475 CA264_05480: CA264_05480 - 3-ketoacyl-ACP reductase, at 1,272,379 to 1,273,098 _05480 CA264_05485: CA264_05485 - T9SS C-terminal target domain-containing protein, at 1,273,348 to 1,276,467 _05485 Position (kb) 1272 1273 1274Strain fitness (log2 ratio) -2 -1 0 1 2at 1271.402 kb on + strand, within CA264_05470at 1271.402 kb on + strand, within CA264_05470at 1271.402 kb on + strand, within CA264_05470at 1271.402 kb on + strand, within CA264_05470at 1271.403 kb on - strand, within CA264_05470at 1271.403 kb on - strand, within CA264_05470at 1271.418 kb on + strand, within CA264_05470at 1271.442 kb on - strandat 1271.472 kb on + strandat 1271.472 kb on + strandat 1271.484 kb on + strandat 1271.498 kb on - strandat 1271.529 kb on + strandat 1271.610 kb on + strand, within CA264_05475at 1271.677 kb on + strand, within CA264_05475at 1271.678 kb on - strand, within CA264_05475at 1271.678 kb on - strand, within CA264_05475at 1271.691 kb on + strand, within CA264_05475at 1271.692 kb on - strand, within CA264_05475at 1271.695 kb on + strand, within CA264_05475at 1271.695 kb on + strand, within CA264_05475at 1271.695 kb on + strandat 1271.869 kb on + strand, within CA264_05475at 1271.870 kb on - strand, within CA264_05475at 1271.947 kb on + strand, within CA264_05475at 1271.947 kb on + strand, within CA264_05475at 1271.948 kb on - strand, within CA264_05475at 1271.948 kb on - strand, within CA264_05475at 1271.949 kb on + strand, within CA264_05475at 1272.181 kb on + strand, within CA264_05475at 1272.226 kb on - strandat 1272.374 kb on + strandat 1272.376 kb on + strandat 1272.391 kb on - strandat 1272.632 kb on + strand, within CA264_05480at 1272.669 kb on + strand, within CA264_05480at 1272.670 kb on - strand, within CA264_05480at 1272.733 kb on + strand, within CA264_05480at 1272.737 kb on + strand, within CA264_05480at 1272.737 kb on + strand, within CA264_05480at 1272.738 kb on - strand, within CA264_05480at 1272.738 kb on - strand, within CA264_05480at 1272.738 kb on - strand, within CA264_05480at 1272.738 kb on - strand, within CA264_05480at 1272.740 kb on + strand, within CA264_05480at 1272.740 kb on + strand, within CA264_05480at 1272.740 kb on + strand, within CA264_05480at 1272.740 kb on + strand, within CA264_05480at 1272.831 kb on + strand, within CA264_05480at 1272.898 kb on - strand, within CA264_05480at 1272.916 kb on + strand, within CA264_05480at 1272.940 kb on - strand, within CA264_05480at 1272.940 kb on - strand, within CA264_05480at 1272.946 kb on + strand, within CA264_05480at 1272.958 kb on + strand, within CA264_05480at 1272.998 kb on - strand, within CA264_05480at 1273.095 kb on + strandat 1273.286 kb on - strandat 1273.287 kb on + strandat 1273.289 kb on + strandat 1273.289 kb on + strandat 1273.290 kb on - strandat 1273.290 kb on - strandat 1273.290 kb on - strandat 1273.292 kb on + strandat 1273.293 kb on - strandat 1273.325 kb on + strandat 1273.325 kb on + strandat 1273.325 kb on + strandat 1273.326 kb on - strandat 1273.329 kb on + strandat 1273.407 kb on - strandat 1273.407 kb on - strandat 1273.420 kb on + strandat 1273.456 kb on + strandat 1273.456 kb on + strandat 1273.456 kb on + strandat 1273.457 kb on - strandat 1273.463 kb on - strandat 1273.463 kb on - strandat 1273.471 kb on + strandat 1273.486 kb on + strandat 1273.486 kb on + strandat 1273.655 kb on - strandat 1273.661 kb on + strand, within CA264_05485at 1273.662 kb on - strand, within CA264_05485at 1273.716 kb on - strand, within CA264_05485at 1273.734 kb on + strand, within CA264_05485at 1273.740 kb on + strand, within CA264_05485at 1273.814 kb on - strand, within CA264_05485at 1273.814 kb on - strand, within CA264_05485at 1273.884 kb on + strand, within CA264_05485at 1273.885 kb on - strand, within CA264_05485at 1273.916 kb on + strand, within CA264_05485at 1273.923 kb on + strand, within CA264_05485at 1273.923 kb on + strand, within CA264_05485at 1273.924 kb on - strand, within CA264_05485at 1273.930 kb on - strand, within CA264_05485at 1273.930 kb on - strand, within CA264_05485at 1273.995 kb on + strand, within CA264_05485at 1274.066 kb on + strand, within CA264_05485at 1274.067 kb on - strand, within CA264_05485at 1274.067 kb on - strand, within CA264_05485at 1274.097 kb on + strand, within CA264_05485

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM
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1,271,402 + CA264_05470 0.81 -0.2
1,271,402 + CA264_05470 0.81 +0.5
1,271,402 + CA264_05470 0.81 -0.5
1,271,402 + CA264_05470 0.81 -0.1
1,271,403 - CA264_05470 0.82 +0.9
1,271,403 - CA264_05470 0.82 +0.1
1,271,418 + CA264_05470 0.85 +0.3
1,271,442 - -0.2
1,271,472 + +0.8
1,271,472 + +0.1
1,271,484 + -1.5
1,271,498 - +0.5
1,271,529 + +0.1
1,271,610 + CA264_05475 0.10 -0.5
1,271,677 + CA264_05475 0.19 -0.3
1,271,678 - CA264_05475 0.19 -0.3
1,271,678 - CA264_05475 0.19 +0.6
1,271,691 + CA264_05475 0.21 -0.2
1,271,692 - CA264_05475 0.21 -0.5
1,271,695 + CA264_05475 0.22 +1.4
1,271,695 + CA264_05475 0.22 +0.0
1,271,695 + +2.1
1,271,869 + CA264_05475 0.44 -0.2
1,271,870 - CA264_05475 0.44 +0.7
1,271,947 + CA264_05475 0.55 +0.6
1,271,947 + CA264_05475 0.55 +0.4
1,271,948 - CA264_05475 0.55 -0.3
1,271,948 - CA264_05475 0.55 +0.5
1,271,949 + CA264_05475 0.55 -0.2
1,272,181 + CA264_05475 0.85 +1.3
1,272,226 - +0.2
1,272,374 + -0.1
1,272,376 + +1.3
1,272,391 - -0.8
1,272,632 + CA264_05480 0.35 -0.1
1,272,669 + CA264_05480 0.40 -1.0
1,272,670 - CA264_05480 0.40 +0.1
1,272,733 + CA264_05480 0.49 +2.3
1,272,737 + CA264_05480 0.50 +0.1
1,272,737 + CA264_05480 0.50 +0.9
1,272,738 - CA264_05480 0.50 +1.9
1,272,738 - CA264_05480 0.50 +1.1
1,272,738 - CA264_05480 0.50 +0.1
1,272,738 - CA264_05480 0.50 +0.2
1,272,740 + CA264_05480 0.50 +0.1
1,272,740 + CA264_05480 0.50 +0.3
1,272,740 + CA264_05480 0.50 -0.2
1,272,740 + CA264_05480 0.50 +0.6
1,272,831 + CA264_05480 0.63 +0.1
1,272,898 - CA264_05480 0.72 +1.1
1,272,916 + CA264_05480 0.75 -0.0
1,272,940 - CA264_05480 0.78 -2.0
1,272,940 - CA264_05480 0.78 -0.8
1,272,946 + CA264_05480 0.79 +0.1
1,272,958 + CA264_05480 0.80 +0.4
1,272,998 - CA264_05480 0.86 -0.6
1,273,095 + -0.8
1,273,286 - -0.7
1,273,287 + -0.3
1,273,289 + -0.1
1,273,289 + -1.9
1,273,290 - +0.0
1,273,290 - +0.6
1,273,290 - +0.7
1,273,292 + +0.4
1,273,293 - -0.2
1,273,325 + +0.1
1,273,325 + -0.8
1,273,325 + -0.3
1,273,326 - -0.4
1,273,329 + -0.0
1,273,407 - +1.0
1,273,407 - -0.1
1,273,420 + -0.6
1,273,456 + +0.7
1,273,456 + -2.4
1,273,456 + +0.6
1,273,457 - -0.3
1,273,463 - +0.8
1,273,463 - +0.1
1,273,471 + -0.7
1,273,486 + +0.2
1,273,486 + +0.0
1,273,655 - -1.1
1,273,661 + CA264_05485 0.10 -0.3
1,273,662 - CA264_05485 0.10 +0.9
1,273,716 - CA264_05485 0.12 +0.2
1,273,734 + CA264_05485 0.12 -0.4
1,273,740 + CA264_05485 0.13 +0.2
1,273,814 - CA264_05485 0.15 -0.0
1,273,814 - CA264_05485 0.15 +0.3
1,273,884 + CA264_05485 0.17 -0.5
1,273,885 - CA264_05485 0.17 -0.6
1,273,916 + CA264_05485 0.18 -0.4
1,273,923 + CA264_05485 0.18 -0.3
1,273,923 + CA264_05485 0.18 -0.7
1,273,924 - CA264_05485 0.18 -0.1
1,273,930 - CA264_05485 0.19 -0.4
1,273,930 - CA264_05485 0.19 +0.3
1,273,995 + CA264_05485 0.21 -0.5
1,274,066 + CA264_05485 0.23 -1.5
1,274,067 - CA264_05485 0.23 -0.9
1,274,067 - CA264_05485 0.23 +0.3
1,274,097 + CA264_05485 0.24 +1.4

Or see this region's nucleotide sequence