Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05460

Experiment: m.b. Chlorite 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05450 and CA264_05455 are separated by 159 nucleotidesCA264_05455 and CA264_05460 are separated by 66 nucleotidesCA264_05460 and CA264_05465 are separated by 532 nucleotides CA264_05450: CA264_05450 - DNA-binding protein, at 1,264,658 to 1,266,601 _05450 CA264_05455: CA264_05455 - hypothetical protein, at 1,266,761 to 1,267,330 _05455 CA264_05460: CA264_05460 - hypothetical protein, at 1,267,397 to 1,269,655 _05460 CA264_05465: CA264_05465 - thymidylate synthase, at 1,270,188 to 1,270,982 _05465 Position (kb) 1267 1268 1269 1270Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1266.525 kb on + strandat 1266.585 kb on + strandat 1266.586 kb on - strandat 1266.588 kb on - strandat 1266.591 kb on - strandat 1266.603 kb on + strandat 1266.603 kb on + strandat 1266.603 kb on + strandat 1266.604 kb on - strandat 1266.604 kb on - strandat 1266.604 kb on - strandat 1266.649 kb on + strandat 1266.650 kb on - strandat 1266.650 kb on - strandat 1266.650 kb on - strandat 1266.650 kb on - strandat 1266.654 kb on - strandat 1266.666 kb on + strandat 1266.680 kb on + strandat 1266.681 kb on - strandat 1266.681 kb on - strandat 1266.696 kb on - strandat 1266.711 kb on + strandat 1266.868 kb on + strand, within CA264_05455at 1266.868 kb on + strand, within CA264_05455at 1266.927 kb on - strand, within CA264_05455at 1266.927 kb on - strand, within CA264_05455at 1267.027 kb on + strand, within CA264_05455at 1267.027 kb on + strand, within CA264_05455at 1267.203 kb on + strand, within CA264_05455at 1267.298 kb on + strandat 1267.299 kb on - strandat 1267.299 kb on - strandat 1267.299 kb on - strandat 1267.299 kb on - strandat 1267.316 kb on + strandat 1267.342 kb on + strandat 1267.367 kb on + strandat 1267.368 kb on - strandat 1267.393 kb on + strandat 1267.500 kb on + strandat 1267.500 kb on + strandat 1267.647 kb on - strand, within CA264_05460at 1267.651 kb on + strand, within CA264_05460at 1267.706 kb on - strand, within CA264_05460at 1267.890 kb on + strand, within CA264_05460at 1268.063 kb on - strand, within CA264_05460at 1268.116 kb on + strand, within CA264_05460at 1268.117 kb on - strand, within CA264_05460at 1268.117 kb on - strand, within CA264_05460at 1268.151 kb on + strand, within CA264_05460at 1268.152 kb on - strand, within CA264_05460at 1268.152 kb on - strand, within CA264_05460at 1268.195 kb on + strand, within CA264_05460at 1268.198 kb on + strand, within CA264_05460at 1268.242 kb on - strand, within CA264_05460at 1268.248 kb on - strand, within CA264_05460at 1268.290 kb on - strand, within CA264_05460at 1268.290 kb on - strand, within CA264_05460at 1268.290 kb on - strand, within CA264_05460at 1268.293 kb on + strand, within CA264_05460at 1268.293 kb on + strand, within CA264_05460at 1268.294 kb on - strand, within CA264_05460at 1268.294 kb on - strand, within CA264_05460at 1268.294 kb on - strand, within CA264_05460at 1268.294 kb on - strand, within CA264_05460at 1268.294 kb on - strand, within CA264_05460at 1268.294 kb on - strand, within CA264_05460at 1268.294 kb on - strand, within CA264_05460at 1268.416 kb on + strand, within CA264_05460at 1268.417 kb on - strand, within CA264_05460at 1268.421 kb on - strand, within CA264_05460at 1268.426 kb on + strand, within CA264_05460at 1268.480 kb on + strand, within CA264_05460at 1268.480 kb on + strand, within CA264_05460at 1268.480 kb on + strand, within CA264_05460at 1268.481 kb on - strand, within CA264_05460at 1268.481 kb on - strand, within CA264_05460at 1268.481 kb on - strand, within CA264_05460at 1268.506 kb on - strand, within CA264_05460at 1268.506 kb on - strand, within CA264_05460at 1268.618 kb on + strand, within CA264_05460at 1268.618 kb on + strand, within CA264_05460at 1268.619 kb on - strand, within CA264_05460at 1268.619 kb on - strand, within CA264_05460at 1268.619 kb on - strand, within CA264_05460at 1268.621 kb on - strand, within CA264_05460at 1268.641 kb on + strand, within CA264_05460at 1268.855 kb on + strand, within CA264_05460at 1268.856 kb on - strand, within CA264_05460at 1269.002 kb on - strand, within CA264_05460at 1269.041 kb on + strand, within CA264_05460at 1269.041 kb on + strand, within CA264_05460at 1269.042 kb on - strand, within CA264_05460at 1269.133 kb on - strand, within CA264_05460at 1269.197 kb on + strand, within CA264_05460at 1269.247 kb on + strand, within CA264_05460at 1269.249 kb on + strand, within CA264_05460at 1269.249 kb on + strand, within CA264_05460at 1269.249 kb on + strand, within CA264_05460at 1269.250 kb on - strand, within CA264_05460at 1269.250 kb on - strand, within CA264_05460at 1269.250 kb on - strand, within CA264_05460at 1269.250 kb on - strand, within CA264_05460at 1269.288 kb on + strand, within CA264_05460at 1269.289 kb on - strand, within CA264_05460at 1269.352 kb on + strand, within CA264_05460at 1269.472 kb on + strandat 1269.473 kb on - strandat 1269.474 kb on + strandat 1269.505 kb on - strandat 1269.508 kb on + strandat 1269.509 kb on - strandat 1269.562 kb on - strandat 1269.638 kb on + strandat 1269.649 kb on - strandat 1269.688 kb on - strandat 1269.753 kb on - strandat 1269.786 kb on + strandat 1269.786 kb on + strandat 1269.786 kb on + strandat 1269.786 kb on + strandat 1269.787 kb on - strandat 1269.787 kb on - strandat 1269.787 kb on - strandat 1269.788 kb on + strandat 1269.788 kb on + strandat 1269.788 kb on + strandat 1269.788 kb on + strandat 1269.788 kb on + strandat 1269.788 kb on + strandat 1269.788 kb on + strandat 1269.789 kb on - strandat 1269.789 kb on - strandat 1269.789 kb on - strandat 1269.792 kb on + strandat 1269.792 kb on + strandat 1269.792 kb on + strandat 1269.792 kb on + strandat 1269.792 kb on + strandat 1269.792 kb on + strandat 1269.792 kb on + strandat 1269.792 kb on + strandat 1269.792 kb on + strandat 1269.792 kb on + strandat 1269.792 kb on + strandat 1269.792 kb on + strandat 1269.792 kb on + strandat 1269.792 kb on + strandat 1269.792 kb on + strandat 1269.793 kb on - strandat 1269.793 kb on - strandat 1269.793 kb on - strandat 1269.793 kb on - strandat 1269.800 kb on + strandat 1269.800 kb on + strandat 1269.801 kb on - strandat 1269.801 kb on - strandat 1269.848 kb on + strandat 1269.848 kb on + strandat 1269.929 kb on - strandat 1269.930 kb on + strandat 1269.930 kb on + strandat 1269.931 kb on - strandat 1269.931 kb on - strandat 1269.934 kb on + strandat 1269.934 kb on + strandat 1269.934 kb on + strandat 1269.934 kb on + strandat 1269.935 kb on - strandat 1269.935 kb on - strandat 1269.935 kb on - strandat 1269.974 kb on - strandat 1269.983 kb on + strandat 1269.986 kb on - strandat 1270.024 kb on + strandat 1270.106 kb on + strandat 1270.106 kb on + strandat 1270.107 kb on - strandat 1270.107 kb on - strandat 1270.107 kb on - strandat 1270.107 kb on - strandat 1270.108 kb on + strandat 1270.108 kb on + strandat 1270.152 kb on + strandat 1270.152 kb on + strandat 1270.153 kb on - strandat 1270.153 kb on - strandat 1270.171 kb on + strandat 1270.171 kb on + strandat 1270.171 kb on + strandat 1270.172 kb on - strandat 1270.172 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM
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1,266,525 + -0.2
1,266,585 + +0.9
1,266,586 - -0.9
1,266,588 - -0.3
1,266,591 - +1.3
1,266,603 + -0.4
1,266,603 + +0.6
1,266,603 + +0.7
1,266,604 - +0.4
1,266,604 - -0.2
1,266,604 - +0.2
1,266,649 + -0.1
1,266,650 - -0.4
1,266,650 - -0.1
1,266,650 - -0.0
1,266,650 - -0.3
1,266,654 - -0.6
1,266,666 + +0.1
1,266,680 + +1.8
1,266,681 - -0.1
1,266,681 - +0.0
1,266,696 - -0.5
1,266,711 + -0.4
1,266,868 + CA264_05455 0.19 -1.8
1,266,868 + CA264_05455 0.19 -1.7
1,266,927 - CA264_05455 0.29 -0.2
1,266,927 - CA264_05455 0.29 -2.5
1,267,027 + CA264_05455 0.47 -0.9
1,267,027 + CA264_05455 0.47 -3.0
1,267,203 + CA264_05455 0.78 -1.1
1,267,298 + -0.7
1,267,299 - -0.7
1,267,299 - -0.6
1,267,299 - -2.0
1,267,299 - -1.1
1,267,316 + -0.7
1,267,342 + +0.3
1,267,367 + +0.1
1,267,368 - -0.8
1,267,393 + +0.1
1,267,500 + -0.6
1,267,500 + +0.9
1,267,647 - CA264_05460 0.11 -0.7
1,267,651 + CA264_05460 0.11 -0.2
1,267,706 - CA264_05460 0.14 -0.7
1,267,890 + CA264_05460 0.22 +0.2
1,268,063 - CA264_05460 0.29 -0.5
1,268,116 + CA264_05460 0.32 -1.1
1,268,117 - CA264_05460 0.32 -0.3
1,268,117 - CA264_05460 0.32 -0.1
1,268,151 + CA264_05460 0.33 +0.2
1,268,152 - CA264_05460 0.33 +0.1
1,268,152 - CA264_05460 0.33 -0.1
1,268,195 + CA264_05460 0.35 +1.4
1,268,198 + CA264_05460 0.35 -0.6
1,268,242 - CA264_05460 0.37 +0.4
1,268,248 - CA264_05460 0.38 +0.1
1,268,290 - CA264_05460 0.40 -0.4
1,268,290 - CA264_05460 0.40 -0.8
1,268,290 - CA264_05460 0.40 -0.7
1,268,293 + CA264_05460 0.40 -1.7
1,268,293 + CA264_05460 0.40 -0.4
1,268,294 - CA264_05460 0.40 -1.4
1,268,294 - CA264_05460 0.40 -0.1
1,268,294 - CA264_05460 0.40 +0.3
1,268,294 - CA264_05460 0.40 -0.5
1,268,294 - CA264_05460 0.40 -0.6
1,268,294 - CA264_05460 0.40 +0.3
1,268,294 - CA264_05460 0.40 -0.2
1,268,416 + CA264_05460 0.45 -0.9
1,268,417 - CA264_05460 0.45 -0.7
1,268,421 - CA264_05460 0.45 -1.3
1,268,426 + CA264_05460 0.46 +0.1
1,268,480 + CA264_05460 0.48 +0.8
1,268,480 + CA264_05460 0.48 -0.3
1,268,480 + CA264_05460 0.48 -0.3
1,268,481 - CA264_05460 0.48 -0.1
1,268,481 - CA264_05460 0.48 -0.2
1,268,481 - CA264_05460 0.48 -0.5
1,268,506 - CA264_05460 0.49 +0.2
1,268,506 - CA264_05460 0.49 -0.4
1,268,618 + CA264_05460 0.54 +1.3
1,268,618 + CA264_05460 0.54 -0.3
1,268,619 - CA264_05460 0.54 -0.2
1,268,619 - CA264_05460 0.54 +0.2
1,268,619 - CA264_05460 0.54 +0.0
1,268,621 - CA264_05460 0.54 -0.6
1,268,641 + CA264_05460 0.55 -0.2
1,268,855 + CA264_05460 0.65 +0.3
1,268,856 - CA264_05460 0.65 -0.3
1,269,002 - CA264_05460 0.71 +0.1
1,269,041 + CA264_05460 0.73 +1.3
1,269,041 + CA264_05460 0.73 -0.2
1,269,042 - CA264_05460 0.73 -0.9
1,269,133 - CA264_05460 0.77 -0.0
1,269,197 + CA264_05460 0.80 -0.4
1,269,247 + CA264_05460 0.82 -0.3
1,269,249 + CA264_05460 0.82 -0.2
1,269,249 + CA264_05460 0.82 -0.0
1,269,249 + CA264_05460 0.82 -0.8
1,269,250 - CA264_05460 0.82 +0.3
1,269,250 - CA264_05460 0.82 +1.0
1,269,250 - CA264_05460 0.82 -0.1
1,269,250 - CA264_05460 0.82 -0.1
1,269,288 + CA264_05460 0.84 +0.0
1,269,289 - CA264_05460 0.84 +0.2
1,269,352 + CA264_05460 0.87 -1.6
1,269,472 + -0.1
1,269,473 - -0.2
1,269,474 + -1.0
1,269,505 - -0.2
1,269,508 + -0.1
1,269,509 - +0.9
1,269,562 - -0.3
1,269,638 + +0.2
1,269,649 - -0.7
1,269,688 - +1.0
1,269,753 - +0.3
1,269,786 + +0.2
1,269,786 + -0.1
1,269,786 + -0.1
1,269,786 + -0.1
1,269,787 - +0.1
1,269,787 - +0.2
1,269,787 - +0.6
1,269,788 + +0.0
1,269,788 + -0.4
1,269,788 + -0.7
1,269,788 + +0.6
1,269,788 + -1.1
1,269,788 + +1.0
1,269,788 + +0.1
1,269,789 - -0.4
1,269,789 - -1.1
1,269,789 - +0.1
1,269,792 + -0.4
1,269,792 + -0.4
1,269,792 + -0.0
1,269,792 + -0.4
1,269,792 + +0.8
1,269,792 + -0.5
1,269,792 + -0.9
1,269,792 + -0.2
1,269,792 + +0.3
1,269,792 + -0.3
1,269,792 + -0.3
1,269,792 + +0.2
1,269,792 + -0.7
1,269,792 + -0.4
1,269,792 + -1.1
1,269,793 - -0.5
1,269,793 - -0.5
1,269,793 - +0.4
1,269,793 - +0.3
1,269,800 + +0.1
1,269,800 + -2.4
1,269,801 - +0.5
1,269,801 - -0.1
1,269,848 + -1.4
1,269,848 + +0.0
1,269,929 - -0.3
1,269,930 + -0.3
1,269,930 + -0.5
1,269,931 - -0.1
1,269,931 - -0.1
1,269,934 + -0.6
1,269,934 + -0.2
1,269,934 + -0.1
1,269,934 + +0.6
1,269,935 - +0.2
1,269,935 - -0.2
1,269,935 - -0.3
1,269,974 - -0.3
1,269,983 + -1.9
1,269,986 - +0.0
1,270,024 + -0.4
1,270,106 + -0.2
1,270,106 + -0.3
1,270,107 - +0.3
1,270,107 - +0.1
1,270,107 - -0.4
1,270,107 - -1.0
1,270,108 + +0.3
1,270,108 + -0.7
1,270,152 + -0.2
1,270,152 + -0.2
1,270,153 - +0.6
1,270,153 - +0.7
1,270,171 + -0.0
1,270,171 + +0.4
1,270,171 + -0.8
1,270,172 - +0.0
1,270,172 - -0.4

Or see this region's nucleotide sequence