Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05395

Experiment: m.b. Chlorite 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05390 and CA264_05395 are separated by 330 nucleotidesCA264_05395 and CA264_05400 are separated by 225 nucleotidesCA264_05400 and CA264_05405 are separated by 186 nucleotides CA264_05390: CA264_05390 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 1,251,730 to 1,253,703 _05390 CA264_05395: CA264_05395 - MmcQ-like protein, at 1,254,034 to 1,254,399 _05395 CA264_05400: CA264_05400 - MarR family transcriptional regulator, at 1,254,625 to 1,255,125 _05400 CA264_05405: CA264_05405 - leucine--tRNA ligase, at 1,255,312 to 1,258,080 _05405 Position (kb) 1254 1255Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1253.670 kb on + strandat 1253.702 kb on - strandat 1253.717 kb on - strandat 1253.737 kb on + strandat 1253.737 kb on + strandat 1253.738 kb on - strandat 1253.740 kb on + strandat 1253.767 kb on - strandat 1253.781 kb on + strandat 1253.782 kb on - strandat 1253.782 kb on - strandat 1253.791 kb on - strandat 1253.826 kb on - strandat 1253.840 kb on + strandat 1253.841 kb on - strandat 1253.846 kb on - strandat 1253.850 kb on + strandat 1253.850 kb on + strandat 1253.851 kb on - strandat 1253.851 kb on - strandat 1253.884 kb on + strandat 1253.892 kb on + strandat 1253.966 kb on - strandat 1254.018 kb on + strandat 1254.018 kb on + strandat 1254.018 kb on + strandat 1254.019 kb on - strandat 1254.039 kb on + strandat 1254.058 kb on + strandat 1254.058 kb on + strandat 1254.058 kb on + strandat 1254.108 kb on + strand, within CA264_05395at 1254.120 kb on + strand, within CA264_05395at 1254.120 kb on + strand, within CA264_05395at 1254.121 kb on - strand, within CA264_05395at 1254.125 kb on + strand, within CA264_05395at 1254.125 kb on + strand, within CA264_05395at 1254.453 kb on - strandat 1254.479 kb on + strandat 1254.484 kb on - strandat 1254.548 kb on - strandat 1254.558 kb on - strandat 1254.618 kb on + strandat 1254.698 kb on - strand, within CA264_05400at 1254.725 kb on - strand, within CA264_05400at 1254.748 kb on - strand, within CA264_05400at 1254.767 kb on - strand, within CA264_05400at 1254.786 kb on - strand, within CA264_05400at 1254.880 kb on - strand, within CA264_05400at 1254.894 kb on - strand, within CA264_05400at 1254.896 kb on + strand, within CA264_05400at 1254.896 kb on + strand, within CA264_05400at 1254.897 kb on - strand, within CA264_05400at 1254.897 kb on - strand, within CA264_05400at 1254.965 kb on + strand, within CA264_05400at 1254.966 kb on - strand, within CA264_05400at 1255.131 kb on - strandat 1255.141 kb on + strandat 1255.142 kb on - strandat 1255.220 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM
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1,253,670 + -0.6
1,253,702 - -0.3
1,253,717 - +0.1
1,253,737 + -1.7
1,253,737 + -1.6
1,253,738 - -1.2
1,253,740 + -1.1
1,253,767 - -0.1
1,253,781 + -0.0
1,253,782 - +0.6
1,253,782 - +3.1
1,253,791 - +0.3
1,253,826 - +1.0
1,253,840 + -0.4
1,253,841 - +0.1
1,253,846 - -0.5
1,253,850 + -0.6
1,253,850 + -1.8
1,253,851 - +0.1
1,253,851 - +0.2
1,253,884 + -1.3
1,253,892 + -1.6
1,253,966 - -2.0
1,254,018 + -1.5
1,254,018 + +0.1
1,254,018 + -0.4
1,254,019 - +0.0
1,254,039 + -0.5
1,254,058 + -0.5
1,254,058 + -0.9
1,254,058 + +0.1
1,254,108 + CA264_05395 0.20 -0.3
1,254,120 + CA264_05395 0.23 -0.8
1,254,120 + CA264_05395 0.23 -0.1
1,254,121 - CA264_05395 0.24 +1.3
1,254,125 + CA264_05395 0.25 +0.1
1,254,125 + CA264_05395 0.25 +0.6
1,254,453 - +0.2
1,254,479 + -1.3
1,254,484 - +0.9
1,254,548 - -0.6
1,254,558 - -0.9
1,254,618 + +0.2
1,254,698 - CA264_05400 0.15 +0.9
1,254,725 - CA264_05400 0.20 +0.4
1,254,748 - CA264_05400 0.25 +1.3
1,254,767 - CA264_05400 0.28 +0.4
1,254,786 - CA264_05400 0.32 -0.1
1,254,880 - CA264_05400 0.51 +1.5
1,254,894 - CA264_05400 0.54 +0.6
1,254,896 + CA264_05400 0.54 +1.6
1,254,896 + CA264_05400 0.54 -0.0
1,254,897 - CA264_05400 0.54 +0.8
1,254,897 - CA264_05400 0.54 +0.3
1,254,965 + CA264_05400 0.68 +0.6
1,254,966 - CA264_05400 0.68 +1.3
1,255,131 - +0.8
1,255,141 + +0.4
1,255,142 - -0.3
1,255,220 + +0.1

Or see this region's nucleotide sequence