Experiment: m.b. Chlorite 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04975 and CA264_04980 are separated by 244 nucleotides CA264_04980 and CA264_04985 overlap by 1 nucleotides CA264_04985 and CA264_04990 are separated by 3 nucleotides
CA264_04975: CA264_04975 - hypothetical protein, at 1,155,434 to 1,156,057
_04975
CA264_04980: CA264_04980 - tRNA(5-methylaminomethyl-2-thiouridine)- methyltransferase, at 1,156,302 to 1,157,429
_04980
CA264_04985: CA264_04985 - hypothetical protein, at 1,157,429 to 1,158,184
_04985
CA264_04990: CA264_04990 - T9SS C-terminal target domain-containing protein, at 1,158,188 to 1,159,852
_04990
Position (kb)
1156
1157
1158 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1155.316 kb on - strand at 1155.394 kb on - strand at 1155.414 kb on + strand at 1155.414 kb on + strand at 1155.446 kb on + strand at 1156.049 kb on + strand at 1156.213 kb on + strand at 1156.221 kb on + strand at 1156.221 kb on + strand at 1156.222 kb on - strand at 1156.222 kb on - strand at 1156.222 kb on - strand at 1156.249 kb on - strand at 1156.288 kb on + strand at 1156.289 kb on - strand at 1157.396 kb on + strand at 1157.406 kb on + strand at 1157.531 kb on + strand, within CA264_04985 at 1157.562 kb on - strand, within CA264_04985 at 1157.568 kb on + strand, within CA264_04985 at 1157.583 kb on - strand, within CA264_04985 at 1157.669 kb on + strand, within CA264_04985 at 1157.730 kb on - strand, within CA264_04985 at 1157.862 kb on - strand, within CA264_04985 at 1157.895 kb on - strand, within CA264_04985 at 1157.913 kb on - strand, within CA264_04985 at 1157.913 kb on - strand, within CA264_04985 at 1157.913 kb on - strand, within CA264_04985 at 1157.914 kb on + strand, within CA264_04985 at 1157.914 kb on + strand, within CA264_04985 at 1157.914 kb on + strand, within CA264_04985 at 1157.915 kb on - strand, within CA264_04985 at 1157.915 kb on - strand, within CA264_04985 at 1157.915 kb on - strand, within CA264_04985 at 1157.918 kb on + strand, within CA264_04985 at 1157.919 kb on - strand, within CA264_04985 at 1158.035 kb on + strand, within CA264_04985 at 1158.036 kb on - strand, within CA264_04985 at 1158.059 kb on + strand, within CA264_04985 at 1158.059 kb on + strand, within CA264_04985 at 1158.068 kb on + strand, within CA264_04985 at 1158.069 kb on - strand, within CA264_04985 at 1158.083 kb on + strand, within CA264_04985 at 1158.116 kb on + strand at 1158.121 kb on + strand at 1158.182 kb on + strand at 1158.187 kb on + strand at 1158.187 kb on + strand at 1158.188 kb on - strand at 1158.207 kb on - strand at 1158.207 kb on - strand at 1158.256 kb on + strand at 1158.257 kb on - strand at 1158.264 kb on + strand at 1158.282 kb on + strand at 1158.286 kb on - strand at 1158.287 kb on + strand at 1158.288 kb on - strand at 1158.314 kb on + strand at 1158.314 kb on + strand at 1158.314 kb on + strand at 1158.420 kb on - strand, within CA264_04990
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM remove 1,155,316 - -0.1 1,155,394 - +0.0 1,155,414 + +1.6 1,155,414 + +0.7 1,155,446 + +1.0 1,156,049 + +0.2 1,156,213 + +0.3 1,156,221 + -0.1 1,156,221 + -0.4 1,156,222 - -0.2 1,156,222 - -0.6 1,156,222 - -1.2 1,156,249 - -0.8 1,156,288 + -0.2 1,156,289 - -0.0 1,157,396 + -0.8 1,157,406 + +0.2 1,157,531 + CA264_04985 0.13 +0.8 1,157,562 - CA264_04985 0.18 +0.2 1,157,568 + CA264_04985 0.18 +0.2 1,157,583 - CA264_04985 0.20 +0.6 1,157,669 + CA264_04985 0.32 -0.2 1,157,730 - CA264_04985 0.40 +0.1 1,157,862 - CA264_04985 0.57 -0.8 1,157,895 - CA264_04985 0.62 -0.0 1,157,913 - CA264_04985 0.64 +1.8 1,157,913 - CA264_04985 0.64 -1.7 1,157,913 - CA264_04985 0.64 -0.9 1,157,914 + CA264_04985 0.64 -0.2 1,157,914 + CA264_04985 0.64 -0.2 1,157,914 + CA264_04985 0.64 -1.2 1,157,915 - CA264_04985 0.64 -0.0 1,157,915 - CA264_04985 0.64 -2.4 1,157,915 - CA264_04985 0.64 -1.5 1,157,918 + CA264_04985 0.65 -0.0 1,157,919 - CA264_04985 0.65 -0.8 1,158,035 + CA264_04985 0.80 -0.0 1,158,036 - CA264_04985 0.80 -0.0 1,158,059 + CA264_04985 0.83 -0.1 1,158,059 + CA264_04985 0.83 -0.7 1,158,068 + CA264_04985 0.85 -0.5 1,158,069 - CA264_04985 0.85 +0.7 1,158,083 + CA264_04985 0.87 -0.1 1,158,116 + -0.6 1,158,121 + +0.3 1,158,182 + +0.1 1,158,187 + +0.2 1,158,187 + +0.1 1,158,188 - -0.1 1,158,207 - -1.1 1,158,207 - -0.0 1,158,256 + -1.1 1,158,257 - +0.6 1,158,264 + -0.2 1,158,282 + +0.2 1,158,286 - +0.2 1,158,287 + -0.5 1,158,288 - +0.3 1,158,314 + +0.7 1,158,314 + +0.4 1,158,314 + -1.0 1,158,420 - CA264_04990 0.14 +0.5
Or see this region's nucleotide sequence