Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04950

Experiment: m.b. Chlorite 0.2 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_04945 and CA264_04950 are separated by 115 nucleotidesCA264_04950 and CA264_04955 are separated by 2 nucleotidesCA264_04955 and CA264_04960 are separated by 11 nucleotides CA264_04945: CA264_04945 - sporulation protein, at 1,150,107 to 1,151,270 _04945 CA264_04950: CA264_04950 - biopolymer transporter ExbB, at 1,151,386 to 1,151,982 _04950 CA264_04955: CA264_04955 - biopolymer transporter ExbD, at 1,151,985 to 1,152,380 _04955 CA264_04960: CA264_04960 - hypothetical protein, at 1,152,392 to 1,153,318 _04960 Position (kb) 1151 1152Strain fitness (log2 ratio) -2 -1 0 1at 1150.429 kb on - strand, within CA264_04945at 1150.429 kb on - strand, within CA264_04945at 1150.458 kb on + strand, within CA264_04945at 1150.472 kb on + strand, within CA264_04945at 1150.472 kb on + strand, within CA264_04945at 1150.475 kb on + strand, within CA264_04945at 1150.476 kb on - strand, within CA264_04945at 1150.476 kb on - strand, within CA264_04945at 1150.522 kb on + strand, within CA264_04945at 1150.522 kb on + strand, within CA264_04945at 1150.528 kb on + strand, within CA264_04945at 1150.623 kb on + strand, within CA264_04945at 1150.623 kb on + strand, within CA264_04945at 1150.624 kb on - strand, within CA264_04945at 1150.699 kb on - strand, within CA264_04945at 1150.789 kb on - strand, within CA264_04945at 1150.824 kb on + strand, within CA264_04945at 1150.824 kb on + strand, within CA264_04945at 1150.825 kb on - strand, within CA264_04945at 1150.893 kb on + strand, within CA264_04945at 1150.970 kb on + strand, within CA264_04945at 1151.003 kb on - strand, within CA264_04945at 1151.052 kb on + strand, within CA264_04945at 1151.061 kb on - strand, within CA264_04945at 1151.261 kb on + strandat 1151.261 kb on + strandat 1151.285 kb on + strandat 1151.286 kb on - strandat 1151.289 kb on - strandat 1151.724 kb on + strand, within CA264_04950at 1151.981 kb on - strandat 1152.378 kb on + strandat 1152.389 kb on - strandat 1152.391 kb on + strandat 1152.392 kb on - strandat 1152.488 kb on + strand, within CA264_04960

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM
remove
1,150,429 - CA264_04945 0.28 -0.9
1,150,429 - CA264_04945 0.28 +0.2
1,150,458 + CA264_04945 0.30 -0.3
1,150,472 + CA264_04945 0.31 -0.5
1,150,472 + CA264_04945 0.31 +0.3
1,150,475 + CA264_04945 0.32 -0.4
1,150,476 - CA264_04945 0.32 -0.1
1,150,476 - CA264_04945 0.32 +0.9
1,150,522 + CA264_04945 0.36 +0.4
1,150,522 + CA264_04945 0.36 -0.4
1,150,528 + CA264_04945 0.36 -0.3
1,150,623 + CA264_04945 0.44 -1.1
1,150,623 + CA264_04945 0.44 -0.4
1,150,624 - CA264_04945 0.44 -0.7
1,150,699 - CA264_04945 0.51 -1.7
1,150,789 - CA264_04945 0.59 -0.7
1,150,824 + CA264_04945 0.62 -0.6
1,150,824 + CA264_04945 0.62 -0.2
1,150,825 - CA264_04945 0.62 -1.0
1,150,893 + CA264_04945 0.68 -1.5
1,150,970 + CA264_04945 0.74 -0.0
1,151,003 - CA264_04945 0.77 +0.7
1,151,052 + CA264_04945 0.81 -0.3
1,151,061 - CA264_04945 0.82 -1.9
1,151,261 + +0.2
1,151,261 + -0.9
1,151,285 + -0.6
1,151,286 - +0.2
1,151,289 - +0.1
1,151,724 + CA264_04950 0.57 -1.4
1,151,981 - -0.8
1,152,378 + +0.0
1,152,389 - -1.0
1,152,391 + -0.2
1,152,392 - -0.0
1,152,488 + CA264_04960 0.10 -2.0

Or see this region's nucleotide sequence