Experiment: m.b. Chlorite 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04535 and CA264_04540 are separated by 145 nucleotides CA264_04540 and CA264_04545 overlap by 6 nucleotides
CA264_04535: CA264_04535 - hypothetical protein, at 1,047,614 to 1,049,398
_04535
CA264_04540: CA264_04540 - PspC family transcriptional regulator, at 1,049,544 to 1,049,762
_04540
CA264_04545: CA264_04545 - dTDP-Rha--alpha-D-GlcNAc-pyrophosphate polyprenol alpha-3-L-rhamnosyltransferase, at 1,049,757 to 1,050,764
_04545
Position (kb)
1049
1050 Strain fitness (log2 ratio)
-1
0
1 at 1048.625 kb on + strand, within CA264_04535 at 1048.625 kb on + strand, within CA264_04535 at 1048.656 kb on - strand, within CA264_04535 at 1048.671 kb on + strand, within CA264_04535 at 1048.780 kb on - strand, within CA264_04535 at 1048.898 kb on - strand, within CA264_04535 at 1048.974 kb on + strand, within CA264_04535 at 1048.975 kb on - strand, within CA264_04535 at 1049.050 kb on - strand, within CA264_04535 at 1049.121 kb on + strand, within CA264_04535 at 1049.122 kb on - strand, within CA264_04535 at 1049.157 kb on + strand, within CA264_04535 at 1049.163 kb on + strand, within CA264_04535 at 1049.164 kb on - strand, within CA264_04535 at 1049.182 kb on - strand, within CA264_04535 at 1049.182 kb on - strand, within CA264_04535 at 1049.389 kb on - strand at 1049.398 kb on + strand at 1049.429 kb on + strand at 1049.430 kb on - strand at 1049.465 kb on + strand at 1049.469 kb on - strand at 1049.469 kb on - strand at 1049.469 kb on - strand at 1049.469 kb on - strand at 1049.469 kb on - strand at 1049.492 kb on + strand at 1049.519 kb on - strand at 1049.524 kb on - strand at 1049.540 kb on + strand at 1049.559 kb on + strand at 1049.560 kb on - strand at 1049.562 kb on + strand at 1049.562 kb on + strand at 1049.562 kb on + strand at 1049.562 kb on + strand at 1049.563 kb on - strand at 1049.627 kb on + strand, within CA264_04540 at 1049.628 kb on - strand, within CA264_04540 at 1049.650 kb on - strand, within CA264_04540 at 1049.758 kb on + strand at 1049.758 kb on + strand at 1049.758 kb on + strand at 1049.761 kb on - strand at 1049.761 kb on - strand at 1049.761 kb on - strand at 1049.761 kb on - strand at 1049.761 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM remove 1,048,625 + CA264_04535 0.57 -1.0 1,048,625 + CA264_04535 0.57 +0.3 1,048,656 - CA264_04535 0.58 +0.2 1,048,671 + CA264_04535 0.59 -1.3 1,048,780 - CA264_04535 0.65 -0.4 1,048,898 - CA264_04535 0.72 +0.1 1,048,974 + CA264_04535 0.76 +0.4 1,048,975 - CA264_04535 0.76 +0.4 1,049,050 - CA264_04535 0.80 +0.1 1,049,121 + CA264_04535 0.84 +0.2 1,049,122 - CA264_04535 0.84 -0.1 1,049,157 + CA264_04535 0.86 +0.1 1,049,163 + CA264_04535 0.87 -0.1 1,049,164 - CA264_04535 0.87 +0.8 1,049,182 - CA264_04535 0.88 -1.4 1,049,182 - CA264_04535 0.88 -0.3 1,049,389 - +0.1 1,049,398 + +0.3 1,049,429 + +0.4 1,049,430 - +1.6 1,049,465 + -0.0 1,049,469 - -1.2 1,049,469 - -0.7 1,049,469 - +0.3 1,049,469 - +0.1 1,049,469 - +0.2 1,049,492 + -0.3 1,049,519 - -0.4 1,049,524 - -0.0 1,049,540 + +0.1 1,049,559 + -0.4 1,049,560 - -1.5 1,049,562 + -0.1 1,049,562 + -0.2 1,049,562 + -1.4 1,049,562 + -0.3 1,049,563 - -0.1 1,049,627 + CA264_04540 0.38 -0.5 1,049,628 - CA264_04540 0.38 -0.7 1,049,650 - CA264_04540 0.48 -0.3 1,049,758 + -0.3 1,049,758 + -0.3 1,049,758 + -0.1 1,049,761 - +0.0 1,049,761 - -0.3 1,049,761 - +0.4 1,049,761 - -0.4 1,049,761 - +0.6
Or see this region's nucleotide sequence