Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02225

Experiment: m.b. Chlorite 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02220 and CA264_02225 are separated by 259 nucleotidesCA264_02225 and CA264_02230 are separated by 253 nucleotides CA264_02220: CA264_02220 - signal peptide peptidase SppA, at 511,225 to 512,988 _02220 CA264_02225: CA264_02225 - purine-nucleoside phosphorylase, at 513,248 to 514,063 _02225 CA264_02230: CA264_02230 - hypothetical protein, at 514,317 to 515,225 _02230 Position (kb) 513 514 515Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 512.324 kb on + strand, within CA264_02220at 512.324 kb on + strand, within CA264_02220at 512.325 kb on - strand, within CA264_02220at 512.325 kb on - strand, within CA264_02220at 512.361 kb on + strand, within CA264_02220at 512.361 kb on + strand, within CA264_02220at 512.361 kb on + strand, within CA264_02220at 512.362 kb on - strand, within CA264_02220at 512.362 kb on - strand, within CA264_02220at 512.392 kb on + strand, within CA264_02220at 512.392 kb on + strand, within CA264_02220at 512.392 kb on + strand, within CA264_02220at 512.392 kb on + strand, within CA264_02220at 512.532 kb on + strand, within CA264_02220at 512.614 kb on + strand, within CA264_02220at 512.615 kb on - strand, within CA264_02220at 512.615 kb on - strand, within CA264_02220at 512.765 kb on + strand, within CA264_02220at 512.766 kb on - strand, within CA264_02220at 512.884 kb on - strandat 512.905 kb on + strandat 512.968 kb on + strandat 512.987 kb on - strandat 513.239 kb on + strandat 513.278 kb on + strandat 513.278 kb on + strandat 513.278 kb on + strandat 513.279 kb on - strandat 513.279 kb on - strandat 513.280 kb on + strandat 513.282 kb on + strandat 513.282 kb on + strandat 513.282 kb on + strandat 513.322 kb on + strandat 513.322 kb on + strandat 513.322 kb on + strandat 513.322 kb on + strandat 513.323 kb on - strandat 513.324 kb on + strandat 513.325 kb on - strandat 513.352 kb on - strand, within CA264_02225at 513.497 kb on + strand, within CA264_02225at 513.497 kb on + strand, within CA264_02225at 513.497 kb on + strand, within CA264_02225at 513.497 kb on + strand, within CA264_02225at 513.498 kb on - strand, within CA264_02225at 513.498 kb on - strand, within CA264_02225at 513.506 kb on + strand, within CA264_02225at 513.507 kb on - strand, within CA264_02225at 513.722 kb on + strand, within CA264_02225at 513.723 kb on - strand, within CA264_02225at 513.723 kb on - strand, within CA264_02225at 513.723 kb on - strand, within CA264_02225at 513.754 kb on + strand, within CA264_02225at 513.794 kb on + strand, within CA264_02225at 513.843 kb on - strand, within CA264_02225at 513.894 kb on + strand, within CA264_02225at 513.894 kb on + strand, within CA264_02225at 513.950 kb on - strand, within CA264_02225at 514.136 kb on - strandat 514.204 kb on + strandat 514.340 kb on - strandat 514.341 kb on + strandat 514.342 kb on - strandat 514.342 kb on - strandat 514.416 kb on - strand, within CA264_02230at 514.417 kb on + strand, within CA264_02230at 514.486 kb on - strand, within CA264_02230at 514.486 kb on - strand, within CA264_02230at 514.496 kb on - strand, within CA264_02230at 514.500 kb on - strand, within CA264_02230at 514.538 kb on - strand, within CA264_02230at 514.693 kb on + strand, within CA264_02230at 514.849 kb on + strand, within CA264_02230at 514.849 kb on + strand, within CA264_02230at 514.850 kb on - strand, within CA264_02230at 514.850 kb on - strand, within CA264_02230at 514.850 kb on - strand, within CA264_02230at 514.850 kb on - strand, within CA264_02230at 514.850 kb on - strand, within CA264_02230at 514.883 kb on - strand, within CA264_02230at 514.883 kb on - strand, within CA264_02230

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM
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512,324 + CA264_02220 0.62 -1.3
512,324 + CA264_02220 0.62 -0.4
512,325 - CA264_02220 0.62 -0.1
512,325 - CA264_02220 0.62 -0.1
512,361 + CA264_02220 0.64 +0.2
512,361 + CA264_02220 0.64 +0.5
512,361 + CA264_02220 0.64 +0.4
512,362 - CA264_02220 0.64 +0.1
512,362 - CA264_02220 0.64 -0.0
512,392 + CA264_02220 0.66 +1.0
512,392 + CA264_02220 0.66 +0.4
512,392 + CA264_02220 0.66 +0.3
512,392 + CA264_02220 0.66 +0.1
512,532 + CA264_02220 0.74 -0.5
512,614 + CA264_02220 0.79 -0.2
512,615 - CA264_02220 0.79 -0.2
512,615 - CA264_02220 0.79 -0.5
512,765 + CA264_02220 0.87 -0.2
512,766 - CA264_02220 0.87 +0.4
512,884 - +0.2
512,905 + +0.2
512,968 + -0.1
512,987 - -1.3
513,239 + +0.4
513,278 + -0.7
513,278 + +0.4
513,278 + -0.3
513,279 - -1.8
513,279 - -2.9
513,280 + +0.8
513,282 + +0.1
513,282 + -0.1
513,282 + -1.0
513,322 + -1.1
513,322 + -1.0
513,322 + -0.4
513,322 + -0.4
513,323 - -0.7
513,324 + -1.0
513,325 - -1.2
513,352 - CA264_02225 0.13 -0.2
513,497 + CA264_02225 0.31 -0.6
513,497 + CA264_02225 0.31 -1.1
513,497 + CA264_02225 0.31 -0.7
513,497 + CA264_02225 0.31 +0.8
513,498 - CA264_02225 0.31 -1.0
513,498 - CA264_02225 0.31 -0.7
513,506 + CA264_02225 0.32 -0.5
513,507 - CA264_02225 0.32 -1.3
513,722 + CA264_02225 0.58 -0.8
513,723 - CA264_02225 0.58 -1.1
513,723 - CA264_02225 0.58 -1.1
513,723 - CA264_02225 0.58 -0.9
513,754 + CA264_02225 0.62 -1.3
513,794 + CA264_02225 0.67 -0.1
513,843 - CA264_02225 0.73 +1.3
513,894 + CA264_02225 0.79 -0.3
513,894 + CA264_02225 0.79 -0.9
513,950 - CA264_02225 0.86 -0.6
514,136 - +0.6
514,204 + +0.8
514,340 - +0.1
514,341 + +0.3
514,342 - +0.7
514,342 - -2.0
514,416 - CA264_02230 0.11 -0.4
514,417 + CA264_02230 0.11 +0.3
514,486 - CA264_02230 0.19 +2.2
514,486 - CA264_02230 0.19 -0.8
514,496 - CA264_02230 0.20 -1.0
514,500 - CA264_02230 0.20 +0.1
514,538 - CA264_02230 0.24 +0.4
514,693 + CA264_02230 0.41 -0.3
514,849 + CA264_02230 0.59 -0.3
514,849 + CA264_02230 0.59 -0.1
514,850 - CA264_02230 0.59 -0.2
514,850 - CA264_02230 0.59 -0.1
514,850 - CA264_02230 0.59 +1.0
514,850 - CA264_02230 0.59 +1.2
514,850 - CA264_02230 0.59 +0.1
514,883 - CA264_02230 0.62 +1.2
514,883 - CA264_02230 0.62 +0.8

Or see this region's nucleotide sequence