Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01365

Experiment: m.b. Chlorite 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01350 and CA264_01355 are separated by 28 nucleotidesCA264_01355 and CA264_01360 are separated by 104 nucleotidesCA264_01360 and CA264_01365 are separated by 135 nucleotidesCA264_01365 and CA264_01370 are separated by 13 nucleotides CA264_01350: CA264_01350 - hypothetical protein, at 320,802 to 321,356 _01350 CA264_01355: CA264_01355 - hypothetical protein, at 321,385 to 321,651 _01355 CA264_01360: CA264_01360 - DUF983 domain-containing protein, at 321,756 to 322,034 _01360 CA264_01365: CA264_01365 - two-component sensor histidine kinase, at 322,170 to 325,808 _01365 CA264_01370: CA264_01370 - hypothetical protein, at 325,822 to 329,289 _01370 Position (kb) 322 323 324 325 326Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 321.354 kb on + strandat 321.378 kb on - strandat 321.760 kb on - strandat 321.760 kb on - strandat 321.825 kb on + strand, within CA264_01360at 321.825 kb on + strand, within CA264_01360at 321.826 kb on - strand, within CA264_01360at 321.826 kb on - strand, within CA264_01360at 321.827 kb on + strand, within CA264_01360at 321.828 kb on - strand, within CA264_01360at 321.828 kb on - strand, within CA264_01360at 321.828 kb on - strand, within CA264_01360at 321.847 kb on + strand, within CA264_01360at 321.851 kb on + strand, within CA264_01360at 321.851 kb on + strand, within CA264_01360at 321.851 kb on + strand, within CA264_01360at 321.852 kb on - strand, within CA264_01360at 321.860 kb on + strand, within CA264_01360at 321.860 kb on + strand, within CA264_01360at 321.879 kb on + strand, within CA264_01360at 321.879 kb on + strand, within CA264_01360at 321.883 kb on - strand, within CA264_01360at 321.912 kb on + strand, within CA264_01360at 321.920 kb on + strand, within CA264_01360at 321.943 kb on + strand, within CA264_01360at 321.944 kb on - strand, within CA264_01360at 321.980 kb on - strand, within CA264_01360at 322.025 kb on - strandat 322.051 kb on - strandat 322.059 kb on + strandat 322.064 kb on + strandat 322.115 kb on + strandat 322.116 kb on - strandat 322.121 kb on + strandat 322.124 kb on - strandat 322.156 kb on + strandat 322.515 kb on + strandat 322.531 kb on + strandat 322.536 kb on + strand, within CA264_01365at 322.538 kb on + strand, within CA264_01365at 322.538 kb on + strand, within CA264_01365at 322.538 kb on + strand, within CA264_01365at 322.538 kb on + strand, within CA264_01365at 322.779 kb on + strand, within CA264_01365at 322.782 kb on + strand, within CA264_01365at 322.801 kb on - strand, within CA264_01365at 323.244 kb on - strand, within CA264_01365at 323.373 kb on - strand, within CA264_01365at 323.452 kb on - strand, within CA264_01365at 323.460 kb on + strand, within CA264_01365at 323.460 kb on + strand, within CA264_01365at 323.509 kb on - strand, within CA264_01365at 323.602 kb on - strand, within CA264_01365at 323.671 kb on - strand, within CA264_01365at 323.688 kb on - strand, within CA264_01365at 323.736 kb on + strand, within CA264_01365at 323.911 kb on + strand, within CA264_01365at 323.952 kb on - strand, within CA264_01365at 324.179 kb on + strand, within CA264_01365at 324.180 kb on - strand, within CA264_01365at 324.244 kb on - strand, within CA264_01365at 324.324 kb on + strand, within CA264_01365at 324.324 kb on + strand, within CA264_01365at 324.366 kb on - strand, within CA264_01365at 324.427 kb on + strand, within CA264_01365at 324.431 kb on + strand, within CA264_01365at 324.432 kb on - strand, within CA264_01365at 324.476 kb on + strand, within CA264_01365at 324.477 kb on - strand, within CA264_01365at 324.486 kb on + strand, within CA264_01365at 324.486 kb on + strand, within CA264_01365at 324.487 kb on - strand, within CA264_01365at 324.487 kb on - strand, within CA264_01365at 324.548 kb on - strand, within CA264_01365at 324.575 kb on + strand, within CA264_01365at 324.578 kb on - strand, within CA264_01365at 324.578 kb on - strand, within CA264_01365at 324.774 kb on - strand, within CA264_01365at 324.783 kb on + strand, within CA264_01365at 324.784 kb on - strand, within CA264_01365at 324.806 kb on + strand, within CA264_01365at 324.905 kb on + strand, within CA264_01365at 324.918 kb on - strand, within CA264_01365at 324.964 kb on + strand, within CA264_01365at 325.079 kb on + strand, within CA264_01365at 325.218 kb on + strand, within CA264_01365at 325.300 kb on + strand, within CA264_01365at 325.300 kb on + strand, within CA264_01365at 325.301 kb on - strand, within CA264_01365at 325.306 kb on + strand, within CA264_01365at 325.559 kb on - strandat 325.559 kb on - strandat 325.597 kb on + strandat 325.613 kb on + strandat 325.639 kb on + strandat 325.639 kb on + strandat 325.779 kb on + strandat 325.779 kb on + strandat 325.851 kb on - strandat 325.901 kb on - strandat 325.901 kb on - strandat 325.998 kb on + strandat 326.115 kb on - strandat 326.154 kb on + strandat 326.195 kb on - strand, within CA264_01370at 326.247 kb on + strand, within CA264_01370at 326.317 kb on - strand, within CA264_01370at 326.350 kb on - strand, within CA264_01370at 326.351 kb on + strand, within CA264_01370at 326.352 kb on - strand, within CA264_01370at 326.352 kb on - strand, within CA264_01370at 326.352 kb on - strand, within CA264_01370at 326.352 kb on - strand, within CA264_01370at 326.352 kb on - strand, within CA264_01370at 326.355 kb on + strand, within CA264_01370at 326.356 kb on - strand, within CA264_01370at 326.356 kb on - strand, within CA264_01370at 326.435 kb on + strand, within CA264_01370at 326.438 kb on - strand, within CA264_01370at 326.438 kb on - strand, within CA264_01370at 326.506 kb on + strand, within CA264_01370at 326.507 kb on - strand, within CA264_01370at 326.507 kb on - strand, within CA264_01370at 326.511 kb on + strand, within CA264_01370at 326.547 kb on + strand, within CA264_01370at 326.547 kb on + strand, within CA264_01370at 326.548 kb on - strand, within CA264_01370at 326.548 kb on - strand, within CA264_01370at 326.548 kb on - strand, within CA264_01370at 326.554 kb on - strand, within CA264_01370at 326.695 kb on + strand, within CA264_01370at 326.695 kb on + strand, within CA264_01370at 326.695 kb on + strand, within CA264_01370at 326.741 kb on + strand, within CA264_01370at 326.742 kb on - strand, within CA264_01370at 326.764 kb on + strand, within CA264_01370at 326.765 kb on - strand, within CA264_01370at 326.799 kb on + strand, within CA264_01370at 326.800 kb on - strand, within CA264_01370

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM
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321,354 + +1.1
321,378 - -0.8
321,760 - -0.3
321,760 - +0.8
321,825 + CA264_01360 0.25 +0.0
321,825 + CA264_01360 0.25 -0.4
321,826 - CA264_01360 0.25 -1.0
321,826 - CA264_01360 0.25 +0.2
321,827 + CA264_01360 0.25 -0.7
321,828 - CA264_01360 0.26 -0.0
321,828 - CA264_01360 0.26 -0.6
321,828 - CA264_01360 0.26 -2.4
321,847 + CA264_01360 0.33 -0.4
321,851 + CA264_01360 0.34 -0.2
321,851 + CA264_01360 0.34 +1.0
321,851 + CA264_01360 0.34 +0.5
321,852 - CA264_01360 0.34 +0.6
321,860 + CA264_01360 0.37 +0.9
321,860 + CA264_01360 0.37 -0.5
321,879 + CA264_01360 0.44 -0.6
321,879 + CA264_01360 0.44 -0.4
321,883 - CA264_01360 0.46 -0.4
321,912 + CA264_01360 0.56 -0.3
321,920 + CA264_01360 0.59 -0.7
321,943 + CA264_01360 0.67 -0.7
321,944 - CA264_01360 0.67 -0.4
321,980 - CA264_01360 0.80 +0.6
322,025 - -0.2
322,051 - +3.0
322,059 + +1.8
322,064 + +2.2
322,115 + -1.6
322,116 - -1.1
322,121 + +1.9
322,124 - -0.4
322,156 + -1.1
322,515 + -0.4
322,531 + -0.7
322,536 + CA264_01365 0.10 -0.3
322,538 + CA264_01365 0.10 -0.8
322,538 + CA264_01365 0.10 +0.4
322,538 + CA264_01365 0.10 +0.8
322,538 + CA264_01365 0.10 -0.6
322,779 + CA264_01365 0.17 -1.0
322,782 + CA264_01365 0.17 -1.6
322,801 - CA264_01365 0.17 -1.6
323,244 - CA264_01365 0.30 -1.6
323,373 - CA264_01365 0.33 -0.4
323,452 - CA264_01365 0.35 -1.4
323,460 + CA264_01365 0.35 -0.2
323,460 + CA264_01365 0.35 -0.6
323,509 - CA264_01365 0.37 +0.5
323,602 - CA264_01365 0.39 -1.1
323,671 - CA264_01365 0.41 -2.3
323,688 - CA264_01365 0.42 -1.2
323,736 + CA264_01365 0.43 -0.7
323,911 + CA264_01365 0.48 -1.3
323,952 - CA264_01365 0.49 -1.6
324,179 + CA264_01365 0.55 -0.7
324,180 - CA264_01365 0.55 -2.7
324,244 - CA264_01365 0.57 -1.0
324,324 + CA264_01365 0.59 +0.6
324,324 + CA264_01365 0.59 -2.1
324,366 - CA264_01365 0.60 -2.9
324,427 + CA264_01365 0.62 -1.6
324,431 + CA264_01365 0.62 -1.0
324,432 - CA264_01365 0.62 -2.1
324,476 + CA264_01365 0.63 -0.6
324,477 - CA264_01365 0.63 -0.7
324,486 + CA264_01365 0.64 +0.3
324,486 + CA264_01365 0.64 -3.2
324,487 - CA264_01365 0.64 -1.1
324,487 - CA264_01365 0.64 -3.5
324,548 - CA264_01365 0.65 -0.4
324,575 + CA264_01365 0.66 -2.6
324,578 - CA264_01365 0.66 -0.1
324,578 - CA264_01365 0.66 -2.0
324,774 - CA264_01365 0.72 +0.4
324,783 + CA264_01365 0.72 -2.7
324,784 - CA264_01365 0.72 -0.7
324,806 + CA264_01365 0.72 -1.0
324,905 + CA264_01365 0.75 -4.1
324,918 - CA264_01365 0.76 -1.3
324,964 + CA264_01365 0.77 -0.5
325,079 + CA264_01365 0.80 -3.6
325,218 + CA264_01365 0.84 -1.5
325,300 + CA264_01365 0.86 -1.1
325,300 + CA264_01365 0.86 -1.9
325,301 - CA264_01365 0.86 -3.3
325,306 + CA264_01365 0.86 -2.8
325,559 - -3.4
325,559 - -1.7
325,597 + -2.2
325,613 + -1.8
325,639 + -2.2
325,639 + -2.5
325,779 + +0.2
325,779 + -2.6
325,851 - -0.5
325,901 - -0.6
325,901 - -0.7
325,998 + -0.1
326,115 - +0.1
326,154 + +2.5
326,195 - CA264_01370 0.11 +0.0
326,247 + CA264_01370 0.12 -0.7
326,317 - CA264_01370 0.14 -0.1
326,350 - CA264_01370 0.15 -0.9
326,351 + CA264_01370 0.15 +0.0
326,352 - CA264_01370 0.15 -0.4
326,352 - CA264_01370 0.15 -0.0
326,352 - CA264_01370 0.15 -0.2
326,352 - CA264_01370 0.15 -1.1
326,352 - CA264_01370 0.15 -0.5
326,355 + CA264_01370 0.15 -0.9
326,356 - CA264_01370 0.15 -0.7
326,356 - CA264_01370 0.15 -0.4
326,435 + CA264_01370 0.18 +0.1
326,438 - CA264_01370 0.18 -0.3
326,438 - CA264_01370 0.18 -0.9
326,506 + CA264_01370 0.20 -1.0
326,507 - CA264_01370 0.20 -0.5
326,507 - CA264_01370 0.20 +0.0
326,511 + CA264_01370 0.20 +0.3
326,547 + CA264_01370 0.21 -0.1
326,547 + CA264_01370 0.21 +0.7
326,548 - CA264_01370 0.21 +1.9
326,548 - CA264_01370 0.21 +0.3
326,548 - CA264_01370 0.21 +1.1
326,554 - CA264_01370 0.21 -0.3
326,695 + CA264_01370 0.25 -0.1
326,695 + CA264_01370 0.25 -0.6
326,695 + CA264_01370 0.25 -1.2
326,741 + CA264_01370 0.26 -0.7
326,742 - CA264_01370 0.27 +1.0
326,764 + CA264_01370 0.27 -1.0
326,765 - CA264_01370 0.27 -1.7
326,799 + CA264_01370 0.28 +0.6
326,800 - CA264_01370 0.28 -0.9

Or see this region's nucleotide sequence