Experiment: m.b. Chlorite 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00005 and CA264_00010 are separated by 90 nucleotides CA264_00010 and CA264_00015 are separated by 410 nucleotides CA264_00015 and CA264_00020 are separated by 535 nucleotides
CA264_00005: CA264_00005 - chromosomal replication initiation protein DnaA, at 1 to 1,425
_00005
CA264_00010: CA264_00010 - hypothetical protein, at 1,516 to 1,944
_00010
CA264_00015: CA264_00015 - hypothetical protein, at 2,355 to 3,854
_00015
CA264_00020: CA264_00020 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 4,390 to 5,541
_00020
Position (kb)
2
3
4 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1.437 kb on - strand at 1.496 kb on + strand at 1.551 kb on - strand at 1.634 kb on + strand, within CA264_00010 at 1.754 kb on + strand, within CA264_00010 at 1.755 kb on - strand, within CA264_00010 at 1.755 kb on - strand, within CA264_00010 at 1.766 kb on - strand, within CA264_00010 at 1.775 kb on + strand, within CA264_00010 at 1.776 kb on - strand, within CA264_00010 at 1.853 kb on + strand, within CA264_00010 at 1.854 kb on - strand, within CA264_00010 at 1.857 kb on - strand, within CA264_00010 at 1.857 kb on - strand, within CA264_00010 at 1.862 kb on + strand, within CA264_00010 at 1.874 kb on + strand, within CA264_00010 at 1.875 kb on - strand, within CA264_00010 at 1.902 kb on + strand at 1.903 kb on - strand at 1.903 kb on - strand at 1.947 kb on + strand at 1.979 kb on - strand at 1.991 kb on - strand at 2.007 kb on + strand at 2.008 kb on - strand at 2.008 kb on - strand at 2.028 kb on + strand at 2.028 kb on + strand at 2.029 kb on - strand at 2.078 kb on + strand at 2.079 kb on - strand at 2.080 kb on + strand at 2.081 kb on - strand at 2.081 kb on - strand at 2.108 kb on + strand at 2.189 kb on + strand at 2.193 kb on + strand at 2.194 kb on - strand at 2.230 kb on - strand at 2.230 kb on - strand at 2.230 kb on - strand at 2.242 kb on + strand at 2.243 kb on - strand at 2.300 kb on - strand at 2.300 kb on - strand at 2.319 kb on - strand at 2.363 kb on - strand at 2.395 kb on - strand at 2.462 kb on + strand at 2.677 kb on - strand, within CA264_00015 at 2.677 kb on - strand, within CA264_00015 at 2.677 kb on - strand, within CA264_00015 at 2.677 kb on - strand, within CA264_00015 at 2.699 kb on + strand, within CA264_00015 at 2.699 kb on + strand, within CA264_00015 at 2.742 kb on + strand, within CA264_00015 at 2.853 kb on - strand, within CA264_00015 at 3.016 kb on - strand, within CA264_00015 at 3.016 kb on - strand, within CA264_00015 at 3.016 kb on - strand, within CA264_00015 at 3.016 kb on - strand, within CA264_00015 at 3.061 kb on + strand, within CA264_00015 at 3.088 kb on - strand, within CA264_00015 at 3.258 kb on - strand, within CA264_00015 at 3.331 kb on - strand, within CA264_00015 at 3.370 kb on - strand, within CA264_00015 at 3.402 kb on - strand, within CA264_00015 at 3.411 kb on + strand, within CA264_00015 at 3.425 kb on - strand, within CA264_00015 at 3.425 kb on - strand, within CA264_00015 at 3.445 kb on - strand, within CA264_00015 at 3.662 kb on + strand, within CA264_00015 at 3.678 kb on + strand, within CA264_00015 at 3.679 kb on - strand, within CA264_00015 at 3.754 kb on - strand at 3.754 kb on - strand at 3.835 kb on + strand at 3.836 kb on - strand at 3.836 kb on - strand at 3.859 kb on + strand at 3.860 kb on - strand at 4.024 kb on - strand at 4.024 kb on - strand at 4.054 kb on - strand at 4.054 kb on - strand at 4.057 kb on + strand at 4.058 kb on - strand at 4.066 kb on - strand at 4.066 kb on - strand at 4.066 kb on - strand at 4.066 kb on - strand at 4.243 kb on + strand at 4.244 kb on - strand at 4.278 kb on - strand at 4.283 kb on - strand at 4.283 kb on - strand at 4.283 kb on - strand at 4.289 kb on - strand at 4.307 kb on - strand at 4.333 kb on + strand at 4.334 kb on - strand at 4.334 kb on - strand at 4.334 kb on - strand at 4.334 kb on - strand at 4.336 kb on - strand at 4.336 kb on - strand at 4.340 kb on + strand at 4.341 kb on - strand at 4.341 kb on - strand at 4.341 kb on - strand at 4.347 kb on - strand at 4.354 kb on + strand at 4.355 kb on - strand at 4.377 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM remove 1,437 - -0.6 1,496 + +0.5 1,551 - -0.2 1,634 + CA264_00010 0.28 -0.4 1,754 + CA264_00010 0.55 -0.1 1,755 - CA264_00010 0.56 -0.1 1,755 - CA264_00010 0.56 -1.7 1,766 - CA264_00010 0.58 -1.4 1,775 + CA264_00010 0.60 -0.6 1,776 - CA264_00010 0.61 -0.6 1,853 + CA264_00010 0.79 +0.1 1,854 - CA264_00010 0.79 -0.6 1,857 - CA264_00010 0.79 -1.4 1,857 - CA264_00010 0.79 -0.7 1,862 + CA264_00010 0.81 -0.9 1,874 + CA264_00010 0.83 -0.5 1,875 - CA264_00010 0.84 +0.6 1,902 + -0.1 1,903 - -1.1 1,903 - -1.3 1,947 + -0.6 1,979 - -1.6 1,991 - -2.0 2,007 + -0.2 2,008 - +0.2 2,008 - +0.2 2,028 + +0.3 2,028 + +0.4 2,029 - -0.4 2,078 + +0.9 2,079 - +0.4 2,080 + +0.3 2,081 - -0.0 2,081 - +0.0 2,108 + +0.6 2,189 + -0.2 2,193 + +1.1 2,194 - +0.3 2,230 - +0.7 2,230 - +0.5 2,230 - +1.5 2,242 + +0.5 2,243 - -0.1 2,300 - -0.5 2,300 - +0.9 2,319 - +0.6 2,363 - -0.1 2,395 - -1.5 2,462 + -0.8 2,677 - CA264_00015 0.21 -1.6 2,677 - CA264_00015 0.21 -2.4 2,677 - CA264_00015 0.21 -2.0 2,677 - CA264_00015 0.21 -2.0 2,699 + CA264_00015 0.23 -1.4 2,699 + CA264_00015 0.23 -1.2 2,742 + CA264_00015 0.26 +0.8 2,853 - CA264_00015 0.33 +0.1 3,016 - CA264_00015 0.44 -1.0 3,016 - CA264_00015 0.44 -0.6 3,016 - CA264_00015 0.44 -2.7 3,016 - CA264_00015 0.44 -0.8 3,061 + CA264_00015 0.47 -1.9 3,088 - CA264_00015 0.49 -1.7 3,258 - CA264_00015 0.60 -2.2 3,331 - CA264_00015 0.65 -2.8 3,370 - CA264_00015 0.68 -1.9 3,402 - CA264_00015 0.70 -3.9 3,411 + CA264_00015 0.70 -1.6 3,425 - CA264_00015 0.71 -0.4 3,425 - CA264_00015 0.71 -1.6 3,445 - CA264_00015 0.73 -2.5 3,662 + CA264_00015 0.87 +0.2 3,678 + CA264_00015 0.88 -0.9 3,679 - CA264_00015 0.88 -1.1 3,754 - -2.7 3,754 - -3.3 3,835 + +1.0 3,836 - +0.7 3,836 - +0.0 3,859 + +0.1 3,860 - +0.1 4,024 - +1.5 4,024 - +1.4 4,054 - +0.6 4,054 - +0.5 4,057 + +0.7 4,058 - +0.6 4,066 - -0.1 4,066 - +0.3 4,066 - +0.1 4,066 - -0.1 4,243 + +0.6 4,244 - +0.9 4,278 - +0.4 4,283 - +0.8 4,283 - +1.1 4,283 - +0.0 4,289 - +1.0 4,307 - +1.5 4,333 + +0.8 4,334 - -0.3 4,334 - +0.5 4,334 - -1.8 4,334 - +0.6 4,336 - -0.1 4,336 - +1.2 4,340 + -0.5 4,341 - +0.2 4,341 - -0.2 4,341 - -1.1 4,347 - +0.9 4,354 + +1.0 4,355 - +1.5 4,377 + +0.5
Or see this region's nucleotide sequence