Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22720

Experiment: 30_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS22715 and AMB_RS22720 overlap by 1 nucleotidesAMB_RS22720 and AMB_RS22725 are separated by 19 nucleotides AMB_RS22715: AMB_RS22715 - argininosuccinate lyase, at 4,901,082 to 4,902,497 _RS22715 AMB_RS22720: AMB_RS22720 - hypothetical protein, at 4,902,497 to 4,902,682 _RS22720 AMB_RS22725: AMB_RS22725 - diaminopimelate decarboxylase, at 4,902,702 to 4,903,976 _RS22725 Position (kb) 4902 4903Strain fitness (log2 ratio) -2 -1 0 1at 4902.605 kb on + strand, within AMB_RS22720at 4902.605 kb on + strand, within AMB_RS22720at 4902.607 kb on + strand, within AMB_RS22720at 4902.607 kb on + strand, within AMB_RS22720at 4902.607 kb on + strand, within AMB_RS22720at 4902.607 kb on + strand, within AMB_RS22720at 4902.607 kb on + strand, within AMB_RS22720at 4902.607 kb on + strand, within AMB_RS22720

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_initial_2
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4,902,605 + AMB_RS22720 0.58 -2.3
4,902,605 + AMB_RS22720 0.58 -0.0
4,902,607 + AMB_RS22720 0.59 +0.3
4,902,607 + AMB_RS22720 0.59 -0.1
4,902,607 + AMB_RS22720 0.59 -0.1
4,902,607 + AMB_RS22720 0.59 +0.8
4,902,607 + AMB_RS22720 0.59 +1.0
4,902,607 + AMB_RS22720 0.59 +0.7

Or see this region's nucleotide sequence