Experiment: 30_initial_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS22445 and AMB_RS22450 are separated by 97 nucleotides AMB_RS22450 and AMB_RS22455 are separated by 174 nucleotides
AMB_RS22445: AMB_RS22445 - tetratricopeptide repeat protein, at 4,844,583 to 4,846,259
_RS22445
AMB_RS22450: AMB_RS22450 - electron transfer flavoprotein-ubiquinone oxidoreductase, at 4,846,357 to 4,847,979
_RS22450
AMB_RS22455: AMB_RS22455 - uracil-DNA glycosylase, at 4,848,154 to 4,848,993
_RS22455
AMB_RS23670: AMB_RS23670 - two-component sensor histidine kinase, at 4,848,977 to 4,850,815
_RS23670
Position (kb) 4846
4847
4848 Strain fitness (log2 ratio) -2
-1
0
1 at 4845.593 kb on - strand, within AMB_RS22445 at 4845.593 kb on - strand, within AMB_RS22445 at 4845.593 kb on - strand, within AMB_RS22445 at 4845.749 kb on - strand, within AMB_RS22445 at 4845.749 kb on - strand, within AMB_RS22445 at 4846.296 kb on - strand at 4846.296 kb on - strand at 4846.296 kb on - strand at 4846.359 kb on - strand at 4846.359 kb on - strand at 4846.359 kb on - strand at 4846.359 kb on - strand at 4846.359 kb on - strand at 4846.359 kb on - strand at 4846.515 kb on - strand at 4846.781 kb on + strand, within AMB_RS22450 at 4846.781 kb on + strand, within AMB_RS22450 at 4846.781 kb on + strand, within AMB_RS22450 at 4846.781 kb on + strand, within AMB_RS22450 at 4846.782 kb on - strand, within AMB_RS22450 at 4846.782 kb on - strand, within AMB_RS22450 at 4846.782 kb on - strand, within AMB_RS22450 at 4846.782 kb on - strand, within AMB_RS22450 at 4846.898 kb on + strand, within AMB_RS22450 at 4847.106 kb on - strand, within AMB_RS22450 at 4847.106 kb on - strand, within AMB_RS22450 at 4847.270 kb on + strand, within AMB_RS22450 at 4847.270 kb on + strand, within AMB_RS22450 at 4847.271 kb on - strand, within AMB_RS22450 at 4847.271 kb on - strand, within AMB_RS22450 at 4847.369 kb on + strand, within AMB_RS22450 at 4847.369 kb on + strand, within AMB_RS22450 at 4847.369 kb on + strand, within AMB_RS22450 at 4847.567 kb on + strand, within AMB_RS22450 at 4847.568 kb on - strand, within AMB_RS22450 at 4847.568 kb on - strand, within AMB_RS22450 at 4847.666 kb on + strand, within AMB_RS22450 at 4847.666 kb on + strand, within AMB_RS22450 at 4847.666 kb on + strand, within AMB_RS22450 at 4847.666 kb on + strand, within AMB_RS22450 at 4847.667 kb on - strand, within AMB_RS22450 at 4847.667 kb on - strand, within AMB_RS22450 at 4847.667 kb on - strand, within AMB_RS22450 at 4847.667 kb on - strand, within AMB_RS22450 at 4847.667 kb on - strand, within AMB_RS22450 at 4847.667 kb on - strand, within AMB_RS22450 at 4847.979 kb on + strand at 4847.989 kb on + strand at 4847.990 kb on - strand at 4847.990 kb on - strand at 4848.037 kb on + strand at 4848.038 kb on - strand at 4848.038 kb on - strand at 4848.047 kb on + strand at 4848.047 kb on + strand at 4848.047 kb on + strand at 4848.047 kb on + strand at 4848.047 kb on + strand at 4848.047 kb on + strand at 4848.048 kb on - strand at 4848.048 kb on - strand at 4848.048 kb on - strand at 4848.048 kb on - strand at 4848.048 kb on - strand at 4848.048 kb on - strand at 4848.049 kb on + strand at 4848.049 kb on + strand at 4848.049 kb on + strand at 4848.049 kb on + strand at 4848.049 kb on + strand at 4848.050 kb on - strand at 4848.050 kb on - strand at 4848.092 kb on + strand at 4848.092 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_initial_2 remove 4,845,593 - AMB_RS22445 0.60 +1.4 4,845,593 - AMB_RS22445 0.60 +0.1 4,845,593 - AMB_RS22445 0.60 +0.8 4,845,749 - AMB_RS22445 0.70 -0.5 4,845,749 - AMB_RS22445 0.70 +0.6 4,846,296 - -0.8 4,846,296 - -0.1 4,846,296 - -0.4 4,846,359 - +0.1 4,846,359 - -0.6 4,846,359 - +0.1 4,846,359 - +0.2 4,846,359 - +0.0 4,846,359 - -0.2 4,846,515 - -1.0 4,846,781 + AMB_RS22450 0.26 +0.3 4,846,781 + AMB_RS22450 0.26 -1.0 4,846,781 + AMB_RS22450 0.26 -0.6 4,846,781 + AMB_RS22450 0.26 +0.2 4,846,782 - AMB_RS22450 0.26 -1.6 4,846,782 - AMB_RS22450 0.26 -1.1 4,846,782 - AMB_RS22450 0.26 -0.6 4,846,782 - AMB_RS22450 0.26 -1.0 4,846,898 + AMB_RS22450 0.33 -0.4 4,847,106 - AMB_RS22450 0.46 -0.0 4,847,106 - AMB_RS22450 0.46 +0.6 4,847,270 + AMB_RS22450 0.56 -1.9 4,847,270 + AMB_RS22450 0.56 -1.4 4,847,271 - AMB_RS22450 0.56 -0.9 4,847,271 - AMB_RS22450 0.56 -1.0 4,847,369 + AMB_RS22450 0.62 -1.3 4,847,369 + AMB_RS22450 0.62 -2.0 4,847,369 + AMB_RS22450 0.62 -1.8 4,847,567 + AMB_RS22450 0.75 -0.6 4,847,568 - AMB_RS22450 0.75 -0.8 4,847,568 - AMB_RS22450 0.75 -0.4 4,847,666 + AMB_RS22450 0.81 -0.5 4,847,666 + AMB_RS22450 0.81 -1.2 4,847,666 + AMB_RS22450 0.81 -0.5 4,847,666 + AMB_RS22450 0.81 -0.6 4,847,667 - AMB_RS22450 0.81 -1.4 4,847,667 - AMB_RS22450 0.81 -1.0 4,847,667 - AMB_RS22450 0.81 -0.8 4,847,667 - AMB_RS22450 0.81 +0.5 4,847,667 - AMB_RS22450 0.81 -0.0 4,847,667 - AMB_RS22450 0.81 -1.6 4,847,979 + +0.4 4,847,989 + -0.4 4,847,990 - +0.5 4,847,990 - +0.2 4,848,037 + +0.1 4,848,038 - -0.1 4,848,038 - -1.6 4,848,047 + -0.0 4,848,047 + -0.2 4,848,047 + +0.5 4,848,047 + -1.3 4,848,047 + -0.1 4,848,047 + -0.2 4,848,048 - -0.0 4,848,048 - -1.5 4,848,048 - -0.8 4,848,048 - -0.3 4,848,048 - -0.4 4,848,048 - +0.1 4,848,049 + -0.2 4,848,049 + +0.4 4,848,049 + +0.3 4,848,049 + -0.6 4,848,049 + -0.0 4,848,050 - -2.4 4,848,050 - -1.4 4,848,092 + -0.5 4,848,092 + -0.7
Or see this region's nucleotide sequence