Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22165

Experiment: 30_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS22160 and AMB_RS22165 overlap by 4 nucleotidesAMB_RS22165 and AMB_RS22170 are separated by 83 nucleotidesAMB_RS22170 and AMB_RS22175 are separated by 3 nucleotidesAMB_RS22175 and AMB_RS22180 are separated by 240 nucleotides AMB_RS22160: AMB_RS22160 - phenylalanine--tRNA ligase subunit beta, at 4,782,233 to 4,784,629 _RS22160 AMB_RS22165: AMB_RS22165 - phenylalanine--tRNA ligase subunit alpha, at 4,784,626 to 4,785,701 _RS22165 AMB_RS22170: AMB_RS22170 - 50S ribosomal protein L20, at 4,785,785 to 4,786,141 _RS22170 AMB_RS22175: AMB_RS22175 - 50S ribosomal protein L35, at 4,786,145 to 4,786,348 _RS22175 AMB_RS22180: AMB_RS22180 - EamA/RhaT family transporter, at 4,786,589 to 4,787,443 _RS22180 Position (kb) 4784 4785 4786Strain fitness (log2 ratio) -3 -2 -1 0 1at 4786.436 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_initial_2
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4,786,436 - -3.0

Or see this region's nucleotide sequence