Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22065

Experiment: 30_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS22055 and AMB_RS22060 are separated by 3 nucleotidesAMB_RS22060 and AMB_RS22065 are separated by 383 nucleotidesAMB_RS22065 and AMB_RS22070 are separated by 225 nucleotides AMB_RS22055: AMB_RS22055 - HPP family protein, at 4,763,229 to 4,763,741 _RS22055 AMB_RS22060: AMB_RS22060 - XRE family transcriptional regulator, at 4,763,745 to 4,764,128 _RS22060 AMB_RS22065: AMB_RS22065 - class I SAM-dependent rRNA methyltransferase, at 4,764,512 to 4,765,717 _RS22065 AMB_RS22070: AMB_RS22070 - cytochrome-c oxidase, cbb3-type subunit I, at 4,765,943 to 4,767,397 _RS22070 Position (kb) 4764 4765 4766Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4763.703 kb on + strandat 4763.703 kb on + strandat 4763.746 kb on + strandat 4763.746 kb on + strandat 4763.747 kb on - strandat 4763.791 kb on + strand, within AMB_RS22060at 4763.792 kb on - strand, within AMB_RS22060at 4763.792 kb on - strand, within AMB_RS22060at 4763.792 kb on - strand, within AMB_RS22060at 4763.792 kb on - strand, within AMB_RS22060at 4763.827 kb on + strand, within AMB_RS22060at 4763.828 kb on - strand, within AMB_RS22060at 4763.830 kb on + strand, within AMB_RS22060at 4763.968 kb on + strand, within AMB_RS22060at 4763.968 kb on + strand, within AMB_RS22060at 4763.969 kb on - strand, within AMB_RS22060at 4763.969 kb on - strand, within AMB_RS22060at 4764.043 kb on + strand, within AMB_RS22060at 4764.159 kb on - strandat 4764.159 kb on - strandat 4764.253 kb on + strandat 4764.285 kb on - strandat 4764.337 kb on + strandat 4764.338 kb on - strandat 4764.341 kb on + strandat 4764.344 kb on + strandat 4764.362 kb on + strandat 4764.363 kb on - strandat 4764.452 kb on + strandat 4764.465 kb on + strandat 4764.538 kb on + strandat 4764.538 kb on + strandat 4764.538 kb on + strandat 4764.538 kb on + strandat 4764.538 kb on + strandat 4764.538 kb on + strandat 4764.543 kb on + strandat 4764.543 kb on + strandat 4764.544 kb on - strandat 4765.005 kb on + strand, within AMB_RS22065at 4765.005 kb on + strand, within AMB_RS22065at 4765.005 kb on + strand, within AMB_RS22065at 4765.006 kb on - strand, within AMB_RS22065at 4765.006 kb on - strand, within AMB_RS22065at 4765.009 kb on + strand, within AMB_RS22065at 4765.009 kb on + strand, within AMB_RS22065at 4765.009 kb on + strand, within AMB_RS22065at 4765.009 kb on + strand, within AMB_RS22065at 4765.009 kb on + strand, within AMB_RS22065at 4765.009 kb on + strand, within AMB_RS22065at 4765.009 kb on + strand, within AMB_RS22065at 4765.009 kb on + strand, within AMB_RS22065at 4765.009 kb on + strand, within AMB_RS22065at 4765.009 kb on + strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.011 kb on + strand, within AMB_RS22065at 4765.011 kb on + strand, within AMB_RS22065at 4765.011 kb on + strand, within AMB_RS22065at 4765.011 kb on + strand, within AMB_RS22065at 4765.012 kb on - strand, within AMB_RS22065at 4765.012 kb on - strand, within AMB_RS22065at 4765.306 kb on + strand, within AMB_RS22065at 4765.306 kb on + strand, within AMB_RS22065at 4765.307 kb on - strand, within AMB_RS22065at 4765.307 kb on - strand, within AMB_RS22065at 4765.307 kb on - strand, within AMB_RS22065at 4765.307 kb on - strand, within AMB_RS22065at 4765.729 kb on + strandat 4765.730 kb on - strandat 4765.788 kb on + strandat 4765.788 kb on + strandat 4765.788 kb on + strandat 4765.788 kb on + strandat 4765.788 kb on + strandat 4765.788 kb on + strandat 4765.790 kb on + strandat 4765.790 kb on + strandat 4765.790 kb on + strandat 4765.790 kb on + strandat 4765.790 kb on + strandat 4765.790 kb on + strandat 4765.790 kb on + strandat 4765.790 kb on + strandat 4765.822 kb on + strandat 4765.822 kb on + strandat 4765.822 kb on + strandat 4765.822 kb on + strandat 4765.822 kb on + strandat 4765.822 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_initial_2
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4,763,703 + -0.5
4,763,703 + +0.9
4,763,746 + -0.2
4,763,746 + -0.8
4,763,747 - -0.7
4,763,791 + AMB_RS22060 0.12 -0.2
4,763,792 - AMB_RS22060 0.12 -0.1
4,763,792 - AMB_RS22060 0.12 +0.2
4,763,792 - AMB_RS22060 0.12 -0.2
4,763,792 - AMB_RS22060 0.12 +0.3
4,763,827 + AMB_RS22060 0.21 -0.1
4,763,828 - AMB_RS22060 0.22 +0.9
4,763,830 + AMB_RS22060 0.22 -3.2
4,763,968 + AMB_RS22060 0.58 +0.0
4,763,968 + AMB_RS22060 0.58 -0.1
4,763,969 - AMB_RS22060 0.58 +0.8
4,763,969 - AMB_RS22060 0.58 -1.2
4,764,043 + AMB_RS22060 0.78 -0.0
4,764,159 - -1.0
4,764,159 - +0.2
4,764,253 + -1.0
4,764,285 - -0.2
4,764,337 + -0.4
4,764,338 - +0.3
4,764,341 + -0.0
4,764,344 + -0.7
4,764,362 + +0.1
4,764,363 - +0.4
4,764,452 + +2.6
4,764,465 + -0.1
4,764,538 + -0.0
4,764,538 + +0.9
4,764,538 + -0.2
4,764,538 + -0.0
4,764,538 + -0.1
4,764,538 + -0.3
4,764,543 + -0.4
4,764,543 + -0.6
4,764,544 - -0.0
4,765,005 + AMB_RS22065 0.41 -1.2
4,765,005 + AMB_RS22065 0.41 +0.5
4,765,005 + AMB_RS22065 0.41 -0.6
4,765,006 - AMB_RS22065 0.41 -0.2
4,765,006 - AMB_RS22065 0.41 -0.7
4,765,009 + AMB_RS22065 0.41 -0.0
4,765,009 + AMB_RS22065 0.41 -0.3
4,765,009 + AMB_RS22065 0.41 +0.2
4,765,009 + AMB_RS22065 0.41 -0.9
4,765,009 + AMB_RS22065 0.41 -1.8
4,765,009 + AMB_RS22065 0.41 -0.4
4,765,009 + AMB_RS22065 0.41 +0.1
4,765,009 + AMB_RS22065 0.41 -0.2
4,765,009 + AMB_RS22065 0.41 -0.2
4,765,009 + AMB_RS22065 0.41 +0.8
4,765,010 - AMB_RS22065 0.41 +0.1
4,765,010 - AMB_RS22065 0.41 -0.4
4,765,010 - AMB_RS22065 0.41 +0.2
4,765,010 - AMB_RS22065 0.41 -0.1
4,765,010 - AMB_RS22065 0.41 -0.5
4,765,010 - AMB_RS22065 0.41 -0.3
4,765,010 - AMB_RS22065 0.41 -0.1
4,765,010 - AMB_RS22065 0.41 -0.4
4,765,010 - AMB_RS22065 0.41 -0.8
4,765,010 - AMB_RS22065 0.41 -0.1
4,765,010 - AMB_RS22065 0.41 +0.8
4,765,010 - AMB_RS22065 0.41 -0.2
4,765,011 + AMB_RS22065 0.41 -0.1
4,765,011 + AMB_RS22065 0.41 -0.8
4,765,011 + AMB_RS22065 0.41 +0.1
4,765,011 + AMB_RS22065 0.41 -0.4
4,765,012 - AMB_RS22065 0.41 +0.2
4,765,012 - AMB_RS22065 0.41 -0.0
4,765,306 + AMB_RS22065 0.66 +0.1
4,765,306 + AMB_RS22065 0.66 +0.1
4,765,307 - AMB_RS22065 0.66 -0.5
4,765,307 - AMB_RS22065 0.66 -0.1
4,765,307 - AMB_RS22065 0.66 +0.4
4,765,307 - AMB_RS22065 0.66 -1.1
4,765,729 + +0.7
4,765,730 - -0.3
4,765,788 + -1.4
4,765,788 + -1.0
4,765,788 + -0.9
4,765,788 + +0.1
4,765,788 + -0.2
4,765,788 + +0.1
4,765,790 + -0.8
4,765,790 + +0.5
4,765,790 + -0.4
4,765,790 + -0.4
4,765,790 + -0.3
4,765,790 + -0.6
4,765,790 + -0.1
4,765,790 + -0.7
4,765,822 + +0.2
4,765,822 + -0.7
4,765,822 + +0.1
4,765,822 + -0.5
4,765,822 + -0.6
4,765,822 + -0.5

Or see this region's nucleotide sequence