Experiment: 30_initial_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS21715 and AMB_RS21720 are separated by 203 nucleotides AMB_RS21720 and AMB_RS21725 are separated by 13 nucleotides AMB_RS21725 and AMB_RS21730 are separated by 622 nucleotides AMB_RS21730 and AMB_RS21735 are separated by 12 nucleotides
AMB_RS21715: AMB_RS21715 - hypothetical protein, at 4,701,394 to 4,702,020
_RS21715
AMB_RS21720: AMB_RS21720 - hypothetical protein, at 4,702,224 to 4,702,511
_RS21720
AMB_RS21725: AMB_RS21725 - hemerythrin, at 4,702,525 to 4,702,935
_RS21725
AMB_RS21730: AMB_RS21730 - hypothetical protein, at 4,703,558 to 4,703,830
_RS21730
AMB_RS21735: AMB_RS21735 - hypothetical protein, at 4,703,843 to 4,704,139
_RS21735
Position (kb) 4702
4703 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4701.566 kb on + strand, within AMB_RS21715 at 4701.567 kb on + strand, within AMB_RS21715 at 4701.567 kb on + strand, within AMB_RS21715 at 4701.567 kb on + strand, within AMB_RS21715 at 4701.567 kb on + strand, within AMB_RS21715 at 4701.567 kb on + strand, within AMB_RS21715 at 4701.570 kb on - strand, within AMB_RS21715 at 4701.570 kb on - strand, within AMB_RS21715 at 4701.570 kb on - strand, within AMB_RS21715 at 4701.601 kb on + strand, within AMB_RS21715 at 4701.601 kb on + strand, within AMB_RS21715 at 4701.601 kb on + strand, within AMB_RS21715 at 4701.601 kb on + strand, within AMB_RS21715 at 4701.602 kb on - strand, within AMB_RS21715 at 4701.602 kb on - strand, within AMB_RS21715 at 4701.602 kb on - strand, within AMB_RS21715 at 4701.602 kb on - strand, within AMB_RS21715 at 4701.602 kb on - strand, within AMB_RS21715 at 4701.614 kb on + strand, within AMB_RS21715 at 4701.637 kb on + strand, within AMB_RS21715 at 4701.637 kb on + strand, within AMB_RS21715 at 4701.637 kb on + strand, within AMB_RS21715 at 4701.638 kb on - strand, within AMB_RS21715 at 4701.638 kb on - strand, within AMB_RS21715 at 4701.683 kb on - strand, within AMB_RS21715 at 4701.683 kb on - strand, within AMB_RS21715 at 4701.683 kb on - strand, within AMB_RS21715 at 4701.683 kb on - strand, within AMB_RS21715 at 4701.721 kb on + strand, within AMB_RS21715 at 4701.722 kb on - strand, within AMB_RS21715 at 4701.722 kb on - strand, within AMB_RS21715 at 4701.750 kb on + strand, within AMB_RS21715 at 4701.750 kb on + strand, within AMB_RS21715 at 4701.751 kb on - strand, within AMB_RS21715 at 4701.901 kb on + strand, within AMB_RS21715 at 4701.901 kb on + strand, within AMB_RS21715 at 4701.902 kb on - strand, within AMB_RS21715 at 4701.960 kb on + strand at 4701.960 kb on + strand at 4701.961 kb on - strand at 4702.019 kb on - strand at 4702.087 kb on - strand at 4702.101 kb on + strand at 4702.101 kb on + strand at 4702.101 kb on + strand at 4702.101 kb on + strand at 4702.102 kb on - strand at 4702.102 kb on - strand at 4702.170 kb on + strand at 4702.170 kb on + strand at 4702.170 kb on + strand at 4702.171 kb on - strand at 4702.171 kb on - strand at 4702.171 kb on - strand at 4702.171 kb on - strand at 4702.171 kb on - strand at 4702.191 kb on + strand at 4702.191 kb on + strand at 4702.191 kb on + strand at 4702.242 kb on + strand at 4702.243 kb on - strand at 4702.259 kb on + strand, within AMB_RS21720 at 4702.281 kb on + strand, within AMB_RS21720 at 4702.281 kb on + strand, within AMB_RS21720 at 4702.320 kb on + strand, within AMB_RS21720 at 4702.320 kb on + strand, within AMB_RS21720 at 4702.320 kb on + strand, within AMB_RS21720 at 4702.320 kb on + strand, within AMB_RS21720 at 4702.320 kb on + strand, within AMB_RS21720 at 4702.320 kb on + strand, within AMB_RS21720 at 4702.320 kb on + strand, within AMB_RS21720 at 4702.320 kb on + strand, within AMB_RS21720 at 4702.321 kb on - strand, within AMB_RS21720 at 4702.321 kb on - strand, within AMB_RS21720 at 4702.321 kb on - strand, within AMB_RS21720 at 4702.321 kb on - strand, within AMB_RS21720 at 4702.321 kb on - strand, within AMB_RS21720 at 4702.322 kb on + strand, within AMB_RS21720 at 4702.322 kb on + strand, within AMB_RS21720 at 4702.322 kb on + strand, within AMB_RS21720 at 4702.322 kb on + strand, within AMB_RS21720 at 4702.322 kb on + strand, within AMB_RS21720 at 4702.322 kb on + strand, within AMB_RS21720 at 4702.322 kb on + strand, within AMB_RS21720 at 4702.322 kb on + strand, within AMB_RS21720 at 4702.322 kb on + strand, within AMB_RS21720 at 4702.322 kb on + strand, within AMB_RS21720 at 4702.322 kb on + strand, within AMB_RS21720 at 4702.323 kb on - strand, within AMB_RS21720 at 4702.323 kb on - strand, within AMB_RS21720 at 4702.323 kb on - strand, within AMB_RS21720 at 4702.323 kb on - strand, within AMB_RS21720 at 4702.323 kb on - strand, within AMB_RS21720 at 4702.323 kb on - strand, within AMB_RS21720 at 4702.323 kb on - strand, within AMB_RS21720 at 4702.323 kb on - strand, within AMB_RS21720 at 4702.410 kb on + strand, within AMB_RS21720 at 4702.410 kb on + strand, within AMB_RS21720 at 4702.411 kb on - strand, within AMB_RS21720 at 4702.411 kb on - strand, within AMB_RS21720 at 4702.475 kb on + strand, within AMB_RS21720 at 4702.475 kb on + strand, within AMB_RS21720 at 4702.475 kb on + strand, within AMB_RS21720 at 4702.475 kb on + strand, within AMB_RS21720 at 4702.476 kb on - strand, within AMB_RS21720 at 4702.476 kb on - strand, within AMB_RS21720 at 4702.476 kb on - strand, within AMB_RS21720 at 4702.476 kb on - strand, within AMB_RS21720 at 4702.509 kb on + strand at 4702.509 kb on + strand at 4702.509 kb on + strand at 4702.509 kb on + strand at 4702.509 kb on + strand at 4702.510 kb on - strand at 4702.510 kb on - strand at 4702.510 kb on - strand at 4702.549 kb on + strand at 4702.550 kb on - strand at 4702.553 kb on + strand at 4702.562 kb on + strand at 4702.562 kb on + strand at 4702.566 kb on + strand, within AMB_RS21725 at 4702.806 kb on + strand, within AMB_RS21725 at 4702.869 kb on + strand, within AMB_RS21725 at 4702.870 kb on - strand, within AMB_RS21725 at 4702.885 kb on - strand, within AMB_RS21725 at 4702.897 kb on - strand at 4703.148 kb on - strand at 4703.148 kb on - strand at 4703.148 kb on - strand at 4703.153 kb on - strand at 4703.247 kb on - strand at 4703.299 kb on - strand at 4703.354 kb on + strand at 4703.354 kb on + strand at 4703.535 kb on + strand at 4703.535 kb on + strand at 4703.536 kb on - strand at 4703.536 kb on - strand at 4703.536 kb on - strand at 4703.536 kb on - strand at 4703.559 kb on + strand at 4703.559 kb on + strand at 4703.559 kb on + strand at 4703.560 kb on - strand at 4703.560 kb on - strand at 4703.560 kb on - strand at 4703.560 kb on - strand at 4703.870 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_initial_2 remove 4,701,566 + AMB_RS21715 0.27 -0.4 4,701,567 + AMB_RS21715 0.28 -0.2 4,701,567 + AMB_RS21715 0.28 -0.2 4,701,567 + AMB_RS21715 0.28 +0.1 4,701,567 + AMB_RS21715 0.28 +0.5 4,701,567 + AMB_RS21715 0.28 -0.7 4,701,570 - AMB_RS21715 0.28 -0.1 4,701,570 - AMB_RS21715 0.28 -0.2 4,701,570 - AMB_RS21715 0.28 -1.1 4,701,601 + AMB_RS21715 0.33 -0.5 4,701,601 + AMB_RS21715 0.33 -0.2 4,701,601 + AMB_RS21715 0.33 -1.8 4,701,601 + AMB_RS21715 0.33 -1.0 4,701,602 - AMB_RS21715 0.33 +0.0 4,701,602 - AMB_RS21715 0.33 -1.1 4,701,602 - AMB_RS21715 0.33 -0.1 4,701,602 - AMB_RS21715 0.33 +0.8 4,701,602 - AMB_RS21715 0.33 -0.5 4,701,614 + AMB_RS21715 0.35 -0.8 4,701,637 + AMB_RS21715 0.39 -0.4 4,701,637 + AMB_RS21715 0.39 -0.5 4,701,637 + AMB_RS21715 0.39 -0.2 4,701,638 - AMB_RS21715 0.39 -0.9 4,701,638 - AMB_RS21715 0.39 -1.1 4,701,683 - AMB_RS21715 0.46 +0.3 4,701,683 - AMB_RS21715 0.46 +0.2 4,701,683 - AMB_RS21715 0.46 -0.2 4,701,683 - AMB_RS21715 0.46 -0.4 4,701,721 + AMB_RS21715 0.52 +0.1 4,701,722 - AMB_RS21715 0.52 +0.2 4,701,722 - AMB_RS21715 0.52 -1.1 4,701,750 + AMB_RS21715 0.57 +0.2 4,701,750 + AMB_RS21715 0.57 -1.8 4,701,751 - AMB_RS21715 0.57 +0.6 4,701,901 + AMB_RS21715 0.81 +1.2 4,701,901 + AMB_RS21715 0.81 -0.6 4,701,902 - AMB_RS21715 0.81 -0.3 4,701,960 + -0.4 4,701,960 + -1.4 4,701,961 - +0.0 4,702,019 - +0.4 4,702,087 - -1.0 4,702,101 + -1.1 4,702,101 + -0.4 4,702,101 + +0.2 4,702,101 + -0.5 4,702,102 - -0.4 4,702,102 - -0.6 4,702,170 + -0.2 4,702,170 + +1.6 4,702,170 + +0.4 4,702,171 - -0.6 4,702,171 - +1.0 4,702,171 - -0.0 4,702,171 - -0.1 4,702,171 - -1.6 4,702,191 + -1.0 4,702,191 + -1.9 4,702,191 + +0.3 4,702,242 + -0.2 4,702,243 - -0.4 4,702,259 + AMB_RS21720 0.12 +0.1 4,702,281 + AMB_RS21720 0.20 +0.2 4,702,281 + AMB_RS21720 0.20 -0.9 4,702,320 + AMB_RS21720 0.33 +0.0 4,702,320 + AMB_RS21720 0.33 +0.0 4,702,320 + AMB_RS21720 0.33 -0.3 4,702,320 + AMB_RS21720 0.33 +0.1 4,702,320 + AMB_RS21720 0.33 -0.4 4,702,320 + AMB_RS21720 0.33 +0.2 4,702,320 + AMB_RS21720 0.33 -0.8 4,702,320 + AMB_RS21720 0.33 -0.4 4,702,321 - AMB_RS21720 0.34 +0.6 4,702,321 - AMB_RS21720 0.34 -0.4 4,702,321 - AMB_RS21720 0.34 -0.0 4,702,321 - AMB_RS21720 0.34 -0.0 4,702,321 - AMB_RS21720 0.34 -0.0 4,702,322 + AMB_RS21720 0.34 -0.5 4,702,322 + AMB_RS21720 0.34 +0.4 4,702,322 + AMB_RS21720 0.34 +0.4 4,702,322 + AMB_RS21720 0.34 -0.0 4,702,322 + AMB_RS21720 0.34 -1.6 4,702,322 + AMB_RS21720 0.34 -0.4 4,702,322 + AMB_RS21720 0.34 -0.7 4,702,322 + AMB_RS21720 0.34 +0.0 4,702,322 + AMB_RS21720 0.34 +0.2 4,702,322 + AMB_RS21720 0.34 -0.8 4,702,322 + AMB_RS21720 0.34 +0.6 4,702,323 - AMB_RS21720 0.34 -0.5 4,702,323 - AMB_RS21720 0.34 -1.7 4,702,323 - AMB_RS21720 0.34 -0.9 4,702,323 - AMB_RS21720 0.34 +0.1 4,702,323 - AMB_RS21720 0.34 -0.7 4,702,323 - AMB_RS21720 0.34 -0.1 4,702,323 - AMB_RS21720 0.34 -0.2 4,702,323 - AMB_RS21720 0.34 -1.3 4,702,410 + AMB_RS21720 0.65 -0.3 4,702,410 + AMB_RS21720 0.65 -0.3 4,702,411 - AMB_RS21720 0.65 -0.6 4,702,411 - AMB_RS21720 0.65 +0.3 4,702,475 + AMB_RS21720 0.87 -0.4 4,702,475 + AMB_RS21720 0.87 -1.4 4,702,475 + AMB_RS21720 0.87 -0.0 4,702,475 + AMB_RS21720 0.87 -0.4 4,702,476 - AMB_RS21720 0.88 -0.7 4,702,476 - AMB_RS21720 0.88 -0.5 4,702,476 - AMB_RS21720 0.88 -0.6 4,702,476 - AMB_RS21720 0.88 -0.7 4,702,509 + -0.4 4,702,509 + -0.6 4,702,509 + -1.5 4,702,509 + +0.6 4,702,509 + -3.2 4,702,510 - +1.1 4,702,510 - -0.3 4,702,510 - -0.4 4,702,549 + -1.0 4,702,550 - +0.1 4,702,553 + -0.0 4,702,562 + -0.3 4,702,562 + +0.5 4,702,566 + AMB_RS21725 0.10 -3.5 4,702,806 + AMB_RS21725 0.68 -0.2 4,702,869 + AMB_RS21725 0.84 -0.6 4,702,870 - AMB_RS21725 0.84 -2.4 4,702,885 - AMB_RS21725 0.88 -0.4 4,702,897 - +1.8 4,703,148 - -0.1 4,703,148 - -1.0 4,703,148 - -0.3 4,703,153 - +1.0 4,703,247 - -0.2 4,703,299 - -0.5 4,703,354 + -1.9 4,703,354 + -0.3 4,703,535 + -0.4 4,703,535 + +0.0 4,703,536 - -0.4 4,703,536 - -0.1 4,703,536 - +0.2 4,703,536 - +1.5 4,703,559 + +0.4 4,703,559 + +1.5 4,703,559 + +0.4 4,703,560 - +0.1 4,703,560 - -0.7 4,703,560 - +0.2 4,703,560 - -0.2 4,703,870 - -2.4
Or see this region's nucleotide sequence