Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS21275

Experiment: 30_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS21270 and AMB_RS21275 overlap by 4 nucleotidesAMB_RS21275 and AMB_RS21280 overlap by 4 nucleotidesAMB_RS21280 and AMB_RS21285 overlap by 17 nucleotides AMB_RS21270: AMB_RS21270 - acetyl-CoA carboxylase carboxyl transferase subunit alpha, at 4,617,857 to 4,618,810 _RS21270 AMB_RS21275: AMB_RS21275 - glycosyltransferase family 2 protein, at 4,618,807 to 4,619,550 _RS21275 AMB_RS21280: AMB_RS21280 - TVP38/TMEM64 family protein, at 4,619,547 to 4,620,287 _RS21280 AMB_RS21285: AMB_RS21285 - BON domain-containing protein, at 4,620,271 to 4,620,867 _RS21285 Position (kb) 4618 4619 4620Strain fitness (log2 ratio) -1 0 1at 4617.843 kb on + strandat 4619.822 kb on - strand, within AMB_RS21280at 4620.157 kb on + strand, within AMB_RS21280

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_initial_2
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4,617,843 + -0.4
4,619,822 - AMB_RS21280 0.37 -0.8
4,620,157 + AMB_RS21280 0.82 -0.5

Or see this region's nucleotide sequence