Experiment: 30_initial_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS15785 and AMB_RS15790 are separated by 18 nucleotides AMB_RS15790 and AMB_RS15795 are separated by 12 nucleotides AMB_RS15795 and AMB_RS15800 are separated by 319 nucleotides
AMB_RS15785: AMB_RS15785 - elongation factor G, at 3,378,656 to 3,380,740
_RS15785
AMB_RS15790: AMB_RS15790 - 30S ribosomal protein S7, at 3,380,759 to 3,381,229
_RS15790
AMB_RS15795: AMB_RS15795 - 30S ribosomal protein S12, at 3,381,242 to 3,381,613
_RS15795
AMB_RS15800: AMB_RS15800 - lytic transglycosylase domain-containing protein, at 3,381,933 to 3,382,889
_RS15800
Position (kb)
3381
3382 Strain fitness (log2 ratio)
-1
0
1 at 3381.899 kb on + strand at 3381.899 kb on + strand at 3381.900 kb on - strand at 3381.900 kb on - strand at 3381.900 kb on - strand at 3382.384 kb on - strand, within AMB_RS15800 at 3382.535 kb on + strand, within AMB_RS15800 at 3382.536 kb on - strand, within AMB_RS15800 at 3382.536 kb on - strand, within AMB_RS15800 at 3382.536 kb on - strand, within AMB_RS15800 at 3382.536 kb on - strand, within AMB_RS15800 at 3382.536 kb on - strand, within AMB_RS15800 at 3382.607 kb on + strand, within AMB_RS15800
Per-strain Table
Position Strand Gene LocusTag Fraction 30_initial_2 remove 3,381,899 + -0.0 3,381,899 + -0.0 3,381,900 - -0.9 3,381,900 - -1.6 3,381,900 - -0.3 3,382,384 - AMB_RS15800 0.47 -0.2 3,382,535 + AMB_RS15800 0.63 +0.0 3,382,536 - AMB_RS15800 0.63 +0.1 3,382,536 - AMB_RS15800 0.63 -0.8 3,382,536 - AMB_RS15800 0.63 -1.7 3,382,536 - AMB_RS15800 0.63 -0.2 3,382,536 - AMB_RS15800 0.63 -0.3 3,382,607 + AMB_RS15800 0.70 -0.0
Or see this region's nucleotide sequence