Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS14940

Experiment: 30_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS14935 and AMB_RS14940 are separated by 29 nucleotidesAMB_RS14940 and AMB_RS14945 are separated by 138 nucleotides AMB_RS14935: AMB_RS14935 - hypothetical protein, at 3,194,224 to 3,197,919 _RS14935 AMB_RS14940: AMB_RS14940 - hypothetical protein, at 3,197,949 to 3,199,439 _RS14940 AMB_RS14945: AMB_RS14945 - AEC family transporter, at 3,199,578 to 3,200,462 _RS14945 Position (kb) 3197 3198 3199 3200Strain fitness (log2 ratio) -2 -1 0 1at 3197.117 kb on + strand, within AMB_RS14935at 3197.117 kb on + strand, within AMB_RS14935at 3197.276 kb on + strand, within AMB_RS14935at 3197.277 kb on - strand, within AMB_RS14935at 3197.852 kb on + strandat 3197.853 kb on - strandat 3198.148 kb on + strand, within AMB_RS14940at 3198.148 kb on + strand, within AMB_RS14940at 3198.148 kb on + strand, within AMB_RS14940at 3198.148 kb on + strand, within AMB_RS14940at 3198.149 kb on - strand, within AMB_RS14940at 3198.149 kb on - strand, within AMB_RS14940at 3198.149 kb on - strand, within AMB_RS14940at 3198.225 kb on + strand, within AMB_RS14940at 3198.319 kb on + strand, within AMB_RS14940at 3198.319 kb on + strand, within AMB_RS14940at 3198.319 kb on + strand, within AMB_RS14940at 3198.319 kb on + strand, within AMB_RS14940at 3198.320 kb on - strand, within AMB_RS14940at 3198.341 kb on + strand, within AMB_RS14940at 3198.341 kb on + strand, within AMB_RS14940at 3198.341 kb on + strand, within AMB_RS14940at 3198.341 kb on + strand, within AMB_RS14940at 3198.341 kb on + strand, within AMB_RS14940at 3198.341 kb on + strand, within AMB_RS14940at 3198.341 kb on + strand, within AMB_RS14940at 3198.342 kb on - strand, within AMB_RS14940at 3198.342 kb on - strand, within AMB_RS14940at 3198.342 kb on - strand, within AMB_RS14940at 3198.343 kb on + strand, within AMB_RS14940at 3198.343 kb on + strand, within AMB_RS14940at 3198.344 kb on - strand, within AMB_RS14940at 3198.361 kb on + strand, within AMB_RS14940at 3198.361 kb on + strand, within AMB_RS14940at 3198.362 kb on - strand, within AMB_RS14940at 3198.376 kb on + strand, within AMB_RS14940at 3198.376 kb on + strand, within AMB_RS14940at 3198.376 kb on + strand, within AMB_RS14940at 3198.376 kb on + strand, within AMB_RS14940at 3198.376 kb on + strand, within AMB_RS14940at 3198.376 kb on + strand, within AMB_RS14940at 3198.376 kb on + strand, within AMB_RS14940at 3198.377 kb on - strand, within AMB_RS14940at 3198.377 kb on - strand, within AMB_RS14940at 3198.377 kb on - strand, within AMB_RS14940at 3198.377 kb on - strand, within AMB_RS14940at 3198.511 kb on + strand, within AMB_RS14940at 3198.566 kb on - strand, within AMB_RS14940at 3198.566 kb on - strand, within AMB_RS14940at 3198.718 kb on + strand, within AMB_RS14940at 3198.718 kb on + strand, within AMB_RS14940at 3198.719 kb on - strand, within AMB_RS14940at 3198.719 kb on - strand, within AMB_RS14940at 3198.733 kb on + strand, within AMB_RS14940at 3198.734 kb on - strand, within AMB_RS14940at 3198.909 kb on + strand, within AMB_RS14940at 3198.910 kb on - strand, within AMB_RS14940at 3198.922 kb on + strand, within AMB_RS14940at 3198.923 kb on - strand, within AMB_RS14940at 3198.923 kb on - strand, within AMB_RS14940at 3198.923 kb on - strand, within AMB_RS14940at 3199.505 kb on + strandat 3199.505 kb on + strandat 3199.505 kb on + strandat 3199.505 kb on + strandat 3199.506 kb on - strandat 3199.506 kb on - strandat 3199.506 kb on - strandat 3199.506 kb on - strandat 3199.506 kb on - strandat 3199.507 kb on - strandat 3199.508 kb on + strandat 3199.508 kb on + strandat 3199.508 kb on + strandat 3199.508 kb on + strandat 3199.508 kb on + strandat 3199.509 kb on - strandat 3199.509 kb on - strandat 3199.509 kb on - strandat 3199.509 kb on - strandat 3199.509 kb on - strandat 3199.672 kb on + strand, within AMB_RS14945at 3199.672 kb on + strand, within AMB_RS14945at 3199.672 kb on + strand, within AMB_RS14945at 3199.673 kb on - strand, within AMB_RS14945at 3199.673 kb on - strand, within AMB_RS14945at 3199.673 kb on - strand, within AMB_RS14945at 3199.673 kb on - strand, within AMB_RS14945at 3199.673 kb on - strand, within AMB_RS14945at 3199.690 kb on + strand, within AMB_RS14945at 3199.690 kb on + strand, within AMB_RS14945at 3199.690 kb on + strand, within AMB_RS14945at 3199.690 kb on + strand, within AMB_RS14945at 3199.691 kb on - strand, within AMB_RS14945at 3199.691 kb on - strand, within AMB_RS14945at 3199.691 kb on - strand, within AMB_RS14945at 3199.691 kb on - strand, within AMB_RS14945at 3199.691 kb on - strand, within AMB_RS14945at 3199.922 kb on + strand, within AMB_RS14945at 3199.922 kb on + strand, within AMB_RS14945at 3199.922 kb on + strand, within AMB_RS14945at 3199.922 kb on + strand, within AMB_RS14945at 3199.923 kb on - strand, within AMB_RS14945at 3199.955 kb on - strand, within AMB_RS14945at 3199.987 kb on + strand, within AMB_RS14945at 3199.987 kb on + strand, within AMB_RS14945at 3199.987 kb on + strand, within AMB_RS14945at 3199.988 kb on - strand, within AMB_RS14945at 3199.988 kb on - strand, within AMB_RS14945at 3200.179 kb on + strand, within AMB_RS14945at 3200.180 kb on - strand, within AMB_RS14945at 3200.180 kb on - strand, within AMB_RS14945

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_initial_2
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3,197,117 + AMB_RS14935 0.78 -1.4
3,197,117 + AMB_RS14935 0.78 +0.1
3,197,276 + AMB_RS14935 0.83 +0.0
3,197,277 - AMB_RS14935 0.83 -0.8
3,197,852 + -0.5
3,197,853 - -0.9
3,198,148 + AMB_RS14940 0.13 -0.3
3,198,148 + AMB_RS14940 0.13 -0.1
3,198,148 + AMB_RS14940 0.13 +0.8
3,198,148 + AMB_RS14940 0.13 -0.1
3,198,149 - AMB_RS14940 0.13 -0.4
3,198,149 - AMB_RS14940 0.13 +0.1
3,198,149 - AMB_RS14940 0.13 -0.3
3,198,225 + AMB_RS14940 0.19 +0.5
3,198,319 + AMB_RS14940 0.25 +0.2
3,198,319 + AMB_RS14940 0.25 -0.9
3,198,319 + AMB_RS14940 0.25 +0.0
3,198,319 + AMB_RS14940 0.25 +0.8
3,198,320 - AMB_RS14940 0.25 -0.4
3,198,341 + AMB_RS14940 0.26 -0.1
3,198,341 + AMB_RS14940 0.26 +0.1
3,198,341 + AMB_RS14940 0.26 -0.8
3,198,341 + AMB_RS14940 0.26 +0.5
3,198,341 + AMB_RS14940 0.26 -0.4
3,198,341 + AMB_RS14940 0.26 -0.3
3,198,341 + AMB_RS14940 0.26 -0.1
3,198,342 - AMB_RS14940 0.26 -0.1
3,198,342 - AMB_RS14940 0.26 -0.1
3,198,342 - AMB_RS14940 0.26 -0.1
3,198,343 + AMB_RS14940 0.26 +1.6
3,198,343 + AMB_RS14940 0.26 -0.0
3,198,344 - AMB_RS14940 0.26 -0.2
3,198,361 + AMB_RS14940 0.28 -0.9
3,198,361 + AMB_RS14940 0.28 -0.1
3,198,362 - AMB_RS14940 0.28 -0.2
3,198,376 + AMB_RS14940 0.29 -0.7
3,198,376 + AMB_RS14940 0.29 -1.9
3,198,376 + AMB_RS14940 0.29 -0.1
3,198,376 + AMB_RS14940 0.29 +1.3
3,198,376 + AMB_RS14940 0.29 +0.2
3,198,376 + AMB_RS14940 0.29 -1.1
3,198,376 + AMB_RS14940 0.29 +0.1
3,198,377 - AMB_RS14940 0.29 -0.0
3,198,377 - AMB_RS14940 0.29 +0.9
3,198,377 - AMB_RS14940 0.29 -0.1
3,198,377 - AMB_RS14940 0.29 +0.0
3,198,511 + AMB_RS14940 0.38 -0.8
3,198,566 - AMB_RS14940 0.41 -0.4
3,198,566 - AMB_RS14940 0.41 -0.5
3,198,718 + AMB_RS14940 0.52 +1.0
3,198,718 + AMB_RS14940 0.52 -1.4
3,198,719 - AMB_RS14940 0.52 -0.6
3,198,719 - AMB_RS14940 0.52 -1.2
3,198,733 + AMB_RS14940 0.53 -1.0
3,198,734 - AMB_RS14940 0.53 -0.8
3,198,909 + AMB_RS14940 0.64 +0.6
3,198,910 - AMB_RS14940 0.64 -1.0
3,198,922 + AMB_RS14940 0.65 -0.1
3,198,923 - AMB_RS14940 0.65 -0.4
3,198,923 - AMB_RS14940 0.65 +0.4
3,198,923 - AMB_RS14940 0.65 -0.2
3,199,505 + -0.3
3,199,505 + +0.2
3,199,505 + +0.5
3,199,505 + +0.5
3,199,506 - +0.6
3,199,506 - +0.1
3,199,506 - -0.3
3,199,506 - +0.3
3,199,506 - -0.3
3,199,507 - -2.4
3,199,508 + -0.0
3,199,508 + -1.1
3,199,508 + -0.9
3,199,508 + +0.5
3,199,508 + +0.4
3,199,509 - +0.4
3,199,509 - +0.2
3,199,509 - -0.1
3,199,509 - +0.3
3,199,509 - +1.0
3,199,672 + AMB_RS14945 0.11 +1.3
3,199,672 + AMB_RS14945 0.11 +0.6
3,199,672 + AMB_RS14945 0.11 -1.5
3,199,673 - AMB_RS14945 0.11 +0.4
3,199,673 - AMB_RS14945 0.11 -1.5
3,199,673 - AMB_RS14945 0.11 -0.1
3,199,673 - AMB_RS14945 0.11 -1.1
3,199,673 - AMB_RS14945 0.11 -0.6
3,199,690 + AMB_RS14945 0.13 -1.1
3,199,690 + AMB_RS14945 0.13 -1.4
3,199,690 + AMB_RS14945 0.13 +1.2
3,199,690 + AMB_RS14945 0.13 -0.5
3,199,691 - AMB_RS14945 0.13 -0.3
3,199,691 - AMB_RS14945 0.13 +0.4
3,199,691 - AMB_RS14945 0.13 +0.2
3,199,691 - AMB_RS14945 0.13 +0.2
3,199,691 - AMB_RS14945 0.13 +0.4
3,199,922 + AMB_RS14945 0.39 -0.1
3,199,922 + AMB_RS14945 0.39 -0.8
3,199,922 + AMB_RS14945 0.39 +0.9
3,199,922 + AMB_RS14945 0.39 -0.2
3,199,923 - AMB_RS14945 0.39 -1.0
3,199,955 - AMB_RS14945 0.43 +0.2
3,199,987 + AMB_RS14945 0.46 -1.3
3,199,987 + AMB_RS14945 0.46 -1.8
3,199,987 + AMB_RS14945 0.46 -0.6
3,199,988 - AMB_RS14945 0.46 -0.7
3,199,988 - AMB_RS14945 0.46 +0.0
3,200,179 + AMB_RS14945 0.68 +0.0
3,200,180 - AMB_RS14945 0.68 -0.3
3,200,180 - AMB_RS14945 0.68 -0.1

Or see this region's nucleotide sequence