Experiment: 30_initial_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS09110 and AMB_RS09115 are separated by 127 nucleotides AMB_RS09115 and AMB_RS09120 overlap by 4 nucleotides AMB_RS09120 and AMB_RS09125 overlap by 1 nucleotides
AMB_RS09110: AMB_RS09110 - diguanylate cyclase response regulator, at 1,939,081 to 1,940,949
_RS09110
AMB_RS09115: AMB_RS09115 - hypothetical protein, at 1,941,077 to 1,941,403
_RS09115
AMB_RS09120: AMB_RS09120 - ABC transporter ATP-binding protein, at 1,941,400 to 1,942,113
_RS09120
AMB_RS09125: AMB_RS09125 - ABC transporter ATP-binding protein, at 1,942,113 to 1,942,886
_RS09125
Position (kb) 1941
1942 Strain fitness (log2 ratio) -2
-1
0
1 at 1940.080 kb on + strand, within AMB_RS09110 at 1940.080 kb on + strand, within AMB_RS09110 at 1940.080 kb on + strand, within AMB_RS09110 at 1940.080 kb on + strand, within AMB_RS09110 at 1940.080 kb on + strand, within AMB_RS09110 at 1940.080 kb on + strand, within AMB_RS09110 at 1940.080 kb on + strand, within AMB_RS09110 at 1940.080 kb on + strand, within AMB_RS09110 at 1940.081 kb on - strand, within AMB_RS09110 at 1940.081 kb on - strand, within AMB_RS09110 at 1940.081 kb on - strand, within AMB_RS09110 at 1940.081 kb on - strand, within AMB_RS09110 at 1940.081 kb on - strand, within AMB_RS09110 at 1940.081 kb on - strand, within AMB_RS09110 at 1940.084 kb on - strand, within AMB_RS09110 at 1940.279 kb on + strand, within AMB_RS09110 at 1940.280 kb on - strand, within AMB_RS09110 at 1941.001 kb on - strand at 1941.078 kb on + strand at 1941.078 kb on + strand at 1941.078 kb on + strand at 1941.078 kb on + strand at 1941.079 kb on - strand at 1941.114 kb on + strand, within AMB_RS09115 at 1941.114 kb on + strand, within AMB_RS09115 at 1941.114 kb on + strand, within AMB_RS09115 at 1941.114 kb on + strand, within AMB_RS09115 at 1941.114 kb on + strand, within AMB_RS09115 at 1941.114 kb on + strand, within AMB_RS09115 at 1941.115 kb on - strand, within AMB_RS09115 at 1941.115 kb on - strand, within AMB_RS09115 at 1941.285 kb on + strand, within AMB_RS09115 at 1941.285 kb on + strand, within AMB_RS09115 at 1941.285 kb on + strand, within AMB_RS09115 at 1941.286 kb on - strand, within AMB_RS09115 at 1941.286 kb on - strand, within AMB_RS09115 at 1941.423 kb on - strand at 1941.423 kb on - strand at 1941.500 kb on + strand, within AMB_RS09120 at 1941.500 kb on + strand, within AMB_RS09120 at 1941.500 kb on + strand, within AMB_RS09120 at 1941.500 kb on + strand, within AMB_RS09120 at 1941.501 kb on - strand, within AMB_RS09120 at 1942.147 kb on + strand at 1942.148 kb on - strand at 1942.230 kb on - strand, within AMB_RS09125 at 1942.230 kb on - strand, within AMB_RS09125 at 1942.259 kb on + strand, within AMB_RS09125 at 1942.259 kb on + strand, within AMB_RS09125 at 1942.259 kb on + strand, within AMB_RS09125 at 1942.260 kb on - strand, within AMB_RS09125
Per-strain Table
Position Strand Gene LocusTag Fraction 30_initial_2 remove 1,940,080 + AMB_RS09110 0.53 -0.3 1,940,080 + AMB_RS09110 0.53 -0.3 1,940,080 + AMB_RS09110 0.53 -0.3 1,940,080 + AMB_RS09110 0.53 +1.0 1,940,080 + AMB_RS09110 0.53 +0.1 1,940,080 + AMB_RS09110 0.53 +0.4 1,940,080 + AMB_RS09110 0.53 -0.6 1,940,080 + AMB_RS09110 0.53 -0.1 1,940,081 - AMB_RS09110 0.54 -0.2 1,940,081 - AMB_RS09110 0.54 -0.6 1,940,081 - AMB_RS09110 0.54 -0.3 1,940,081 - AMB_RS09110 0.54 -0.1 1,940,081 - AMB_RS09110 0.54 -1.4 1,940,081 - AMB_RS09110 0.54 -1.4 1,940,084 - AMB_RS09110 0.54 -0.3 1,940,279 + AMB_RS09110 0.64 +0.2 1,940,280 - AMB_RS09110 0.64 -0.8 1,941,001 - -2.6 1,941,078 + -0.1 1,941,078 + -0.1 1,941,078 + -0.5 1,941,078 + -0.3 1,941,079 - -0.4 1,941,114 + AMB_RS09115 0.11 -0.3 1,941,114 + AMB_RS09115 0.11 +0.6 1,941,114 + AMB_RS09115 0.11 +0.2 1,941,114 + AMB_RS09115 0.11 +0.7 1,941,114 + AMB_RS09115 0.11 -0.1 1,941,114 + AMB_RS09115 0.11 -0.1 1,941,115 - AMB_RS09115 0.12 -0.1 1,941,115 - AMB_RS09115 0.12 -0.1 1,941,285 + AMB_RS09115 0.64 -0.4 1,941,285 + AMB_RS09115 0.64 +0.1 1,941,285 + AMB_RS09115 0.64 -1.4 1,941,286 - AMB_RS09115 0.64 -1.9 1,941,286 - AMB_RS09115 0.64 -0.1 1,941,423 - -0.1 1,941,423 - -0.8 1,941,500 + AMB_RS09120 0.14 -0.2 1,941,500 + AMB_RS09120 0.14 -0.9 1,941,500 + AMB_RS09120 0.14 -0.6 1,941,500 + AMB_RS09120 0.14 -0.4 1,941,501 - AMB_RS09120 0.14 -1.1 1,942,147 + -0.1 1,942,148 - -0.1 1,942,230 - AMB_RS09125 0.15 -2.1 1,942,230 - AMB_RS09125 0.15 +0.5 1,942,259 + AMB_RS09125 0.19 +0.5 1,942,259 + AMB_RS09125 0.19 +0.7 1,942,259 + AMB_RS09125 0.19 -1.1 1,942,260 - AMB_RS09125 0.19 -0.8
Or see this region's nucleotide sequence