Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS09025

Experiment: 30_initial_2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	30_initial_2
1,921,009	-		AMB_RS09020	0.37	+0.1
1,921,011	+		AMB_RS09020	0.37	+0.5
1,921,089	+		AMB_RS09020	0.42	+0.4
1,921,090	-		AMB_RS09020	0.42	-0.5
1,921,181	-		AMB_RS09020	0.48	-0.0
1,921,186	+		AMB_RS09020	0.48	-0.2
1,921,186	+		AMB_RS09020	0.48	-0.6
1,921,186	+		AMB_RS09020	0.48	+0.3
1,921,186	+		AMB_RS09020	0.48	-0.1
1,921,186	+		AMB_RS09020	0.48	+0.6
1,921,187	-		AMB_RS09020	0.48	-0.2
1,921,187	-		AMB_RS09020	0.48	+0.6
1,921,187	-		AMB_RS09020	0.48	+0.2
1,921,187	-		AMB_RS09020	0.48	-0.2
1,921,187	-		AMB_RS09020	0.48	+0.2
1,921,187	-		AMB_RS09020	0.48	-0.4
1,921,187	-		AMB_RS09020	0.48	-0.5
1,921,187	-		AMB_RS09020	0.48	-0.4
1,921,207	+		AMB_RS09020	0.50	-0.1
1,921,207	+		AMB_RS09020	0.50	-0.1
1,921,207	+		AMB_RS09020	0.50	-0.7
1,921,207	+		AMB_RS09020	0.50	+0.4
1,921,207	+		AMB_RS09020	0.50	+0.8
1,921,207	+		AMB_RS09020	0.50	-0.2
1,921,208	-		AMB_RS09020	0.50	+1.1
1,921,208	-		AMB_RS09020	0.50	+0.1
1,921,211	-		AMB_RS09020	0.50	-0.4
1,921,211	-		AMB_RS09020	0.50	+0.2
1,921,211	-		AMB_RS09020	0.50	+0.1
1,921,211	-		AMB_RS09020	0.50	+0.3
1,921,282	+		AMB_RS09020	0.55	-0.1
1,921,282	+		AMB_RS09020	0.55	-0.2
1,921,282	+		AMB_RS09020	0.55	-0.4
1,921,283	-		AMB_RS09020	0.55	+0.2
1,921,284	+		AMB_RS09020	0.55	+0.7
1,921,285	-		AMB_RS09020	0.55	+0.0
1,921,373	-		AMB_RS09020	0.61	-0.1
1,921,373	-		AMB_RS09020	0.61	+0.2
1,921,373	-		AMB_RS09020	0.61	-0.4
1,921,373	-		AMB_RS09020	0.61	+0.0
1,921,374	+		AMB_RS09020	0.61	-0.3
1,921,374	+		AMB_RS09020	0.61	+0.2
1,921,374	+		AMB_RS09020	0.61	-0.5
1,921,377	+		AMB_RS09020	0.61	+0.4
1,921,377	+		AMB_RS09020	0.61	+0.1
1,921,378	-		AMB_RS09020	0.61	-0.7
1,921,389	+		AMB_RS09020	0.62	-0.1
1,921,402	+		AMB_RS09020	0.63	-1.1
1,921,402	+		AMB_RS09020	0.63	-0.1
1,921,402	+		AMB_RS09020	0.63	-0.7
1,921,410	-		AMB_RS09020	0.63	+0.1
1,921,434	+		AMB_RS09020	0.65	-0.8
1,921,474	+		AMB_RS09020	0.67	-1.0
1,921,474	+		AMB_RS09020	0.67	-0.6
1,921,474	+		AMB_RS09020	0.67	-0.9
1,921,474	+		AMB_RS09020	0.67	-0.5
1,921,474	+		AMB_RS09020	0.67	+0.2
1,921,474	+		AMB_RS09020	0.67	-1.2
1,921,474	+		AMB_RS09020	0.67	-1.1
1,921,475	-		AMB_RS09020	0.67	-0.1
1,921,475	-		AMB_RS09020	0.67	-0.2
1,921,475	-		AMB_RS09020	0.67	-0.1
1,921,475	-		AMB_RS09020	0.67	+1.5
1,921,475	-		AMB_RS09020	0.67	-0.6
1,921,475	-		AMB_RS09020	0.67	-0.8
1,921,475	-		AMB_RS09020	0.67	-0.4
1,921,475	-		AMB_RS09020	0.67	-0.1
1,921,501	+		AMB_RS09020	0.69	+0.4
1,921,501	+		AMB_RS09020	0.69	-0.2
1,921,501	+		AMB_RS09020	0.69	+1.2
1,921,501	+		AMB_RS09020	0.69	-1.9
1,921,502	-		AMB_RS09020	0.69	-0.2
1,921,502	-		AMB_RS09020	0.69	+0.0
1,921,502	-		AMB_RS09020	0.69	+1.2
1,921,502	-		AMB_RS09020	0.69	-0.2
1,921,502	-		AMB_RS09020	0.69	-0.5
1,921,537	-		AMB_RS09020	0.71	-3.5
1,921,561	+		AMB_RS09020	0.73	-1.2
1,921,561	+		AMB_RS09020	0.73	+0.3
1,921,633	+		AMB_RS09020	0.78	-0.3
1,921,633	+		AMB_RS09020	0.78	-0.2
1,921,633	+		AMB_RS09020	0.78	-0.1
1,921,634	-		AMB_RS09020	0.78	-2.2
1,921,634	-		AMB_RS09020	0.78	+0.4
1,921,699	+		AMB_RS09020	0.82	-0.1
1,921,700	-		AMB_RS09020	0.82	-0.3
1,921,700	-		AMB_RS09020	0.82	-0.2
1,921,700	-		AMB_RS09020	0.82	-0.1
1,921,700	-		AMB_RS09020	0.82	-0.5
1,921,711	+		AMB_RS09020	0.83	+0.3
1,921,711	+		AMB_RS09020	0.83	-0.3
1,921,711	+		AMB_RS09020	0.83	-0.2
1,921,712	-		AMB_RS09020	0.83	-0.5
1,921,712	-		AMB_RS09020	0.83	+0.0
1,921,712	-		AMB_RS09020	0.83	-2.3
1,921,720	+		AMB_RS09020	0.83	-1.1
1,921,790	+		AMB_RS09020	0.88	-0.1
1,921,791	-		AMB_RS09020	0.88	-0.3
1,921,846	+				-0.6
1,921,846	+				-0.2
1,921,847	-				+0.3
1,921,847	-				+1.7
1,921,853	+				+0.2
1,921,853	+				-0.2
1,921,854	-				-0.3
1,921,854	-				-0.3
1,921,960	+				-0.4
1,921,961	-				-1.9
1,921,961	-				-0.4
1,921,970	-				-0.8
1,921,970	-				-0.3
1,922,022	+		AMB_RS09025	0.18	-2.4
1,922,022	+		AMB_RS09025	0.18	-0.5
1,922,023	-		AMB_RS09025	0.19	+1.1
1,922,144	+		AMB_RS09025	0.68	+0.1
1,922,144	+		AMB_RS09025	0.68	-3.5
1,922,144	+		AMB_RS09025	0.68	+1.0
1,922,145	-		AMB_RS09025	0.68	+0.5
1,922,145	-		AMB_RS09025	0.68	+0.8
1,922,145	-		AMB_RS09025	0.68	-0.1
1,922,539	+		AMB_RS09030	0.27	+0.6
1,922,587	-		AMB_RS09030	0.31	+0.2
1,922,587	-		AMB_RS09030	0.31	-0.2
1,922,587	-		AMB_RS09030	0.31	+0.3
1,922,621	+		AMB_RS09030	0.34	-1.8
1,922,621	+		AMB_RS09030	0.34	-1.9
1,922,621	+		AMB_RS09030	0.34	-1.4
1,922,621	+		AMB_RS09030	0.34	+0.6
1,922,622	-		AMB_RS09030	0.34	-0.2
1,922,622	-		AMB_RS09030	0.34	+0.3
1,922,622	-		AMB_RS09030	0.34	-0.6
1,922,624	-		AMB_RS09030	0.35	+0.0
1,922,805	+		AMB_RS09030	0.51	+0.4
1,922,806	-		AMB_RS09030	0.51	-0.6
1,922,895	+		AMB_RS09030	0.59	-0.0
1,922,895	+		AMB_RS09030	0.59	-0.3
1,922,896	-		AMB_RS09030	0.59	+1.9
1,922,896	-		AMB_RS09030	0.59	+0.9
1,922,896	-		AMB_RS09030	0.59	-0.4
1,922,913	+		AMB_RS09030	0.60	-0.2
1,922,914	-		AMB_RS09030	0.61	-0.1
1,923,108	+		AMB_RS09030	0.78	-0.2
1,923,108	+		AMB_RS09030	0.78	-0.7
1,923,109	-		AMB_RS09030	0.78	-0.2
1,923,126	+		AMB_RS09030	0.80	-1.0
1,923,126	+		AMB_RS09030	0.80	-0.7
1,923,127	-		AMB_RS09030	0.80	-0.2
1,923,127	-		AMB_RS09030	0.80	-0.1
1,923,127	-		AMB_RS09030	0.80	+0.2
1,923,127	-		AMB_RS09030	0.80	+0.9
1,923,127	-		AMB_RS09030	0.80	-0.1
1,923,129	+		AMB_RS09030	0.80	-0.2
1,923,129	+		AMB_RS09030	0.80	-0.1
1,923,129	+		AMB_RS09030	0.80	-0.7
1,923,130	-		AMB_RS09030	0.80	+0.1
1,923,130	-		AMB_RS09030	0.80	+0.3
1,923,130	-		AMB_RS09030	0.80	-0.7
1,923,130	-		AMB_RS09030	0.80	-1.2
1,923,130	-		AMB_RS09030	0.80	-0.1
1,923,130	-		AMB_RS09030	0.80	-0.6