Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS05090

Experiment: 30_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS05080 and AMB_RS05085 are separated by 67 nucleotidesAMB_RS05085 and AMB_RS05090 are separated by 30 nucleotidesAMB_RS05090 and AMB_RS05095 are separated by 238 nucleotides AMB_RS05080: AMB_RS05080 - response regulator, at 1,051,136 to 1,051,576 _RS05080 AMB_RS05085: AMB_RS05085 - hemerythrin, at 1,051,644 to 1,052,105 _RS05085 AMB_RS05090: AMB_RS05090 - hypothetical protein, at 1,052,136 to 1,053,473 _RS05090 AMB_RS05095: AMB_RS05095 - hemerythrin, at 1,053,712 to 1,054,563 _RS05095 Position (kb) 1052 1053 1054Strain fitness (log2 ratio) -2 -1 0 1at 1051.252 kb on + strand, within AMB_RS05080at 1051.252 kb on + strand, within AMB_RS05080at 1051.252 kb on + strand, within AMB_RS05080at 1051.253 kb on - strand, within AMB_RS05080at 1051.253 kb on - strand, within AMB_RS05080at 1051.363 kb on - strand, within AMB_RS05080at 1051.363 kb on - strand, within AMB_RS05080at 1051.363 kb on - strand, within AMB_RS05080at 1051.363 kb on - strand, within AMB_RS05080at 1051.373 kb on - strand, within AMB_RS05080at 1051.373 kb on - strand, within AMB_RS05080at 1051.405 kb on + strand, within AMB_RS05080at 1051.574 kb on + strandat 1051.613 kb on + strandat 1051.614 kb on - strandat 1051.620 kb on + strandat 1051.620 kb on + strandat 1051.620 kb on + strandat 1051.621 kb on - strandat 1051.685 kb on + strandat 1051.845 kb on + strand, within AMB_RS05085at 1051.896 kb on + strand, within AMB_RS05085at 1052.051 kb on + strand, within AMB_RS05085at 1052.073 kb on + strandat 1052.151 kb on - strandat 1052.252 kb on + strandat 1052.253 kb on - strandat 1052.433 kb on + strand, within AMB_RS05090at 1052.451 kb on - strand, within AMB_RS05090at 1052.451 kb on - strand, within AMB_RS05090at 1052.481 kb on + strand, within AMB_RS05090at 1052.732 kb on + strand, within AMB_RS05090at 1052.855 kb on + strand, within AMB_RS05090at 1052.904 kb on - strand, within AMB_RS05090at 1053.687 kb on + strandat 1053.786 kb on + strandat 1053.787 kb on - strandat 1053.808 kb on - strand, within AMB_RS05095at 1053.897 kb on + strand, within AMB_RS05095at 1053.898 kb on - strand, within AMB_RS05095at 1053.953 kb on - strand, within AMB_RS05095at 1053.953 kb on - strand, within AMB_RS05095at 1054.042 kb on + strand, within AMB_RS05095at 1054.087 kb on + strand, within AMB_RS05095at 1054.087 kb on + strand, within AMB_RS05095at 1054.088 kb on - strand, within AMB_RS05095at 1054.213 kb on - strand, within AMB_RS05095at 1054.225 kb on + strand, within AMB_RS05095at 1054.261 kb on - strand, within AMB_RS05095at 1054.344 kb on + strand, within AMB_RS05095at 1054.359 kb on - strand, within AMB_RS05095at 1054.359 kb on - strand, within AMB_RS05095at 1054.457 kb on - strand, within AMB_RS05095

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_initial_2
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1,051,252 + AMB_RS05080 0.26 +0.5
1,051,252 + AMB_RS05080 0.26 -0.5
1,051,252 + AMB_RS05080 0.26 -0.6
1,051,253 - AMB_RS05080 0.27 -0.3
1,051,253 - AMB_RS05080 0.27 -0.0
1,051,363 - AMB_RS05080 0.51 -0.3
1,051,363 - AMB_RS05080 0.51 +0.4
1,051,363 - AMB_RS05080 0.51 -0.1
1,051,363 - AMB_RS05080 0.51 +1.2
1,051,373 - AMB_RS05080 0.54 -0.4
1,051,373 - AMB_RS05080 0.54 -0.4
1,051,405 + AMB_RS05080 0.61 -1.2
1,051,574 + -0.5
1,051,613 + -0.7
1,051,614 - -0.8
1,051,620 + -1.4
1,051,620 + -0.1
1,051,620 + -0.6
1,051,621 - +0.6
1,051,685 + -0.9
1,051,845 + AMB_RS05085 0.44 -0.4
1,051,896 + AMB_RS05085 0.55 +0.4
1,052,051 + AMB_RS05085 0.88 -0.3
1,052,073 + -1.0
1,052,151 - -0.6
1,052,252 + -0.7
1,052,253 - +0.4
1,052,433 + AMB_RS05090 0.22 -0.6
1,052,451 - AMB_RS05090 0.24 -0.4
1,052,451 - AMB_RS05090 0.24 -0.2
1,052,481 + AMB_RS05090 0.26 -0.3
1,052,732 + AMB_RS05090 0.45 -0.3
1,052,855 + AMB_RS05090 0.54 -1.1
1,052,904 - AMB_RS05090 0.57 -1.3
1,053,687 + -0.1
1,053,786 + -0.1
1,053,787 - +0.7
1,053,808 - AMB_RS05095 0.11 -0.7
1,053,897 + AMB_RS05095 0.22 -1.0
1,053,898 - AMB_RS05095 0.22 -2.1
1,053,953 - AMB_RS05095 0.28 +0.1
1,053,953 - AMB_RS05095 0.28 -2.2
1,054,042 + AMB_RS05095 0.39 -1.7
1,054,087 + AMB_RS05095 0.44 -0.5
1,054,087 + AMB_RS05095 0.44 -0.3
1,054,088 - AMB_RS05095 0.44 -0.6
1,054,213 - AMB_RS05095 0.59 +0.5
1,054,225 + AMB_RS05095 0.60 +0.1
1,054,261 - AMB_RS05095 0.64 -0.5
1,054,344 + AMB_RS05095 0.74 -0.4
1,054,359 - AMB_RS05095 0.76 -0.5
1,054,359 - AMB_RS05095 0.76 -0.6
1,054,457 - AMB_RS05095 0.87 -0.8

Or see this region's nucleotide sequence