Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04665

Experiment: 30_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04660 and AMB_RS04665 overlap by 19 nucleotidesAMB_RS04665 and AMB_RS04670 are separated by 429 nucleotides AMB_RS04660: AMB_RS04660 - VWA domain-containing protein, at 975,797 to 977,311 _RS04660 AMB_RS04665: AMB_RS04665 - hypothetical protein, at 977,293 to 977,532 _RS04665 AMB_RS04670: AMB_RS04670 - signal transduction histidine kinase, at 977,962 to 978,675 _RS04670 Position (kb) 977 978Strain fitness (log2 ratio) -2 -1 0 1at 976.310 kb on - strand, within AMB_RS04660at 976.343 kb on + strand, within AMB_RS04660at 976.343 kb on + strand, within AMB_RS04660at 976.344 kb on - strand, within AMB_RS04660at 976.442 kb on + strand, within AMB_RS04660at 976.442 kb on + strand, within AMB_RS04660at 976.443 kb on - strand, within AMB_RS04660at 976.443 kb on - strand, within AMB_RS04660at 976.443 kb on - strand, within AMB_RS04660at 976.443 kb on - strand, within AMB_RS04660at 976.443 kb on - strand, within AMB_RS04660at 976.443 kb on - strand, within AMB_RS04660at 976.443 kb on - strand, within AMB_RS04660at 976.443 kb on - strand, within AMB_RS04660at 976.443 kb on - strand, within AMB_RS04660at 976.443 kb on - strand, within AMB_RS04660at 976.445 kb on + strand, within AMB_RS04660at 976.445 kb on + strand, within AMB_RS04660at 976.445 kb on + strand, within AMB_RS04660at 976.445 kb on + strand, within AMB_RS04660at 976.445 kb on + strand, within AMB_RS04660at 976.446 kb on - strand, within AMB_RS04660at 976.446 kb on - strand, within AMB_RS04660at 976.446 kb on - strand, within AMB_RS04660at 976.481 kb on + strand, within AMB_RS04660at 976.481 kb on + strand, within AMB_RS04660at 976.482 kb on - strand, within AMB_RS04660at 976.482 kb on - strand, within AMB_RS04660at 976.482 kb on - strand, within AMB_RS04660at 976.482 kb on - strand, within AMB_RS04660at 976.567 kb on + strand, within AMB_RS04660at 976.584 kb on + strand, within AMB_RS04660at 976.584 kb on + strand, within AMB_RS04660at 976.585 kb on - strand, within AMB_RS04660at 976.585 kb on - strand, within AMB_RS04660at 976.585 kb on - strand, within AMB_RS04660at 976.585 kb on - strand, within AMB_RS04660at 976.725 kb on + strand, within AMB_RS04660at 976.725 kb on + strand, within AMB_RS04660at 976.725 kb on + strand, within AMB_RS04660at 976.725 kb on + strand, within AMB_RS04660at 976.791 kb on + strand, within AMB_RS04660at 976.792 kb on - strand, within AMB_RS04660at 976.792 kb on - strand, within AMB_RS04660at 976.792 kb on - strand, within AMB_RS04660at 976.814 kb on + strand, within AMB_RS04660at 976.814 kb on + strand, within AMB_RS04660at 976.814 kb on + strand, within AMB_RS04660at 976.815 kb on - strand, within AMB_RS04660at 976.815 kb on - strand, within AMB_RS04660at 976.815 kb on - strand, within AMB_RS04660at 976.815 kb on - strand, within AMB_RS04660at 976.872 kb on + strand, within AMB_RS04660at 976.873 kb on - strand, within AMB_RS04660at 976.895 kb on + strand, within AMB_RS04660at 976.895 kb on + strand, within AMB_RS04660at 976.896 kb on - strand, within AMB_RS04660at 976.948 kb on + strand, within AMB_RS04660at 976.949 kb on - strand, within AMB_RS04660at 976.949 kb on - strand, within AMB_RS04660at 977.007 kb on + strand, within AMB_RS04660at 977.007 kb on + strand, within AMB_RS04660at 977.114 kb on + strand, within AMB_RS04660at 977.114 kb on + strand, within AMB_RS04660at 977.114 kb on + strand, within AMB_RS04660at 977.114 kb on + strand, within AMB_RS04660at 977.114 kb on + strand, within AMB_RS04660at 977.114 kb on + strand, within AMB_RS04660at 977.115 kb on - strand, within AMB_RS04660at 977.115 kb on - strand, within AMB_RS04660at 977.115 kb on - strand, within AMB_RS04660at 977.115 kb on - strand, within AMB_RS04660at 977.115 kb on - strand, within AMB_RS04660at 977.115 kb on - strand, within AMB_RS04660at 977.115 kb on - strand, within AMB_RS04660at 977.115 kb on - strand, within AMB_RS04660at 977.115 kb on - strand, within AMB_RS04660at 977.303 kb on - strandat 977.326 kb on - strand, within AMB_RS04665at 977.327 kb on + strand, within AMB_RS04665at 977.327 kb on + strand, within AMB_RS04665at 977.327 kb on + strand, within AMB_RS04665at 977.327 kb on + strand, within AMB_RS04665at 977.327 kb on + strand, within AMB_RS04665at 977.328 kb on - strand, within AMB_RS04665at 977.328 kb on - strand, within AMB_RS04665at 977.353 kb on + strand, within AMB_RS04665at 977.550 kb on + strandat 977.570 kb on + strandat 977.571 kb on - strandat 977.622 kb on - strandat 977.622 kb on - strandat 977.622 kb on - strandat 977.644 kb on + strandat 977.723 kb on + strandat 977.723 kb on + strandat 977.723 kb on + strandat 977.819 kb on + strandat 977.819 kb on + strandat 977.991 kb on + strandat 977.991 kb on + strandat 977.991 kb on + strandat 977.991 kb on + strandat 977.992 kb on - strandat 977.996 kb on + strandat 977.996 kb on + strandat 977.996 kb on + strandat 977.997 kb on - strandat 978.098 kb on + strand, within AMB_RS04670at 978.098 kb on + strand, within AMB_RS04670at 978.149 kb on + strand, within AMB_RS04670at 978.150 kb on - strand, within AMB_RS04670at 978.238 kb on + strand, within AMB_RS04670at 978.238 kb on + strand, within AMB_RS04670at 978.238 kb on + strand, within AMB_RS04670at 978.238 kb on + strand, within AMB_RS04670at 978.238 kb on + strand, within AMB_RS04670at 978.239 kb on - strand, within AMB_RS04670at 978.239 kb on - strand, within AMB_RS04670at 978.239 kb on - strand, within AMB_RS04670at 978.239 kb on - strand, within AMB_RS04670at 978.387 kb on + strand, within AMB_RS04670at 978.387 kb on + strand, within AMB_RS04670at 978.387 kb on + strand, within AMB_RS04670at 978.387 kb on + strand, within AMB_RS04670at 978.387 kb on + strand, within AMB_RS04670at 978.387 kb on + strand, within AMB_RS04670at 978.388 kb on - strand, within AMB_RS04670at 978.388 kb on - strand, within AMB_RS04670at 978.388 kb on - strand, within AMB_RS04670at 978.388 kb on - strand, within AMB_RS04670at 978.391 kb on + strand, within AMB_RS04670at 978.392 kb on - strand, within AMB_RS04670at 978.432 kb on + strand, within AMB_RS04670at 978.432 kb on + strand, within AMB_RS04670at 978.432 kb on + strand, within AMB_RS04670at 978.433 kb on - strand, within AMB_RS04670at 978.433 kb on - strand, within AMB_RS04670at 978.447 kb on + strand, within AMB_RS04670at 978.447 kb on + strand, within AMB_RS04670at 978.460 kb on + strand, within AMB_RS04670at 978.522 kb on + strand, within AMB_RS04670at 978.522 kb on + strand, within AMB_RS04670at 978.522 kb on + strand, within AMB_RS04670

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_initial_2
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976,310 - AMB_RS04660 0.34 +0.1
976,343 + AMB_RS04660 0.36 +0.0
976,343 + AMB_RS04660 0.36 +0.1
976,344 - AMB_RS04660 0.36 +0.1
976,442 + AMB_RS04660 0.43 -0.6
976,442 + AMB_RS04660 0.43 -0.2
976,443 - AMB_RS04660 0.43 +0.6
976,443 - AMB_RS04660 0.43 -0.5
976,443 - AMB_RS04660 0.43 -1.1
976,443 - AMB_RS04660 0.43 -0.0
976,443 - AMB_RS04660 0.43 -0.9
976,443 - AMB_RS04660 0.43 -0.1
976,443 - AMB_RS04660 0.43 -0.1
976,443 - AMB_RS04660 0.43 -0.5
976,443 - AMB_RS04660 0.43 -0.4
976,443 - AMB_RS04660 0.43 -0.3
976,445 + AMB_RS04660 0.43 -0.8
976,445 + AMB_RS04660 0.43 -0.3
976,445 + AMB_RS04660 0.43 +0.3
976,445 + AMB_RS04660 0.43 -1.0
976,445 + AMB_RS04660 0.43 +0.6
976,446 - AMB_RS04660 0.43 -0.1
976,446 - AMB_RS04660 0.43 -0.1
976,446 - AMB_RS04660 0.43 -2.4
976,481 + AMB_RS04660 0.45 -0.6
976,481 + AMB_RS04660 0.45 -0.1
976,482 - AMB_RS04660 0.45 -0.7
976,482 - AMB_RS04660 0.45 +0.4
976,482 - AMB_RS04660 0.45 -0.1
976,482 - AMB_RS04660 0.45 +0.0
976,567 + AMB_RS04660 0.51 -0.2
976,584 + AMB_RS04660 0.52 +0.6
976,584 + AMB_RS04660 0.52 +0.7
976,585 - AMB_RS04660 0.52 -0.2
976,585 - AMB_RS04660 0.52 +0.2
976,585 - AMB_RS04660 0.52 -0.7
976,585 - AMB_RS04660 0.52 -0.5
976,725 + AMB_RS04660 0.61 -0.4
976,725 + AMB_RS04660 0.61 -1.6
976,725 + AMB_RS04660 0.61 -0.9
976,725 + AMB_RS04660 0.61 -0.0
976,791 + AMB_RS04660 0.66 -1.0
976,792 - AMB_RS04660 0.66 +1.2
976,792 - AMB_RS04660 0.66 +0.1
976,792 - AMB_RS04660 0.66 -0.7
976,814 + AMB_RS04660 0.67 -0.9
976,814 + AMB_RS04660 0.67 -0.7
976,814 + AMB_RS04660 0.67 +0.0
976,815 - AMB_RS04660 0.67 +1.0
976,815 - AMB_RS04660 0.67 -0.3
976,815 - AMB_RS04660 0.67 -1.0
976,815 - AMB_RS04660 0.67 -0.6
976,872 + AMB_RS04660 0.71 -2.5
976,873 - AMB_RS04660 0.71 +0.3
976,895 + AMB_RS04660 0.72 -0.3
976,895 + AMB_RS04660 0.72 +0.7
976,896 - AMB_RS04660 0.73 -0.1
976,948 + AMB_RS04660 0.76 -1.0
976,949 - AMB_RS04660 0.76 -2.6
976,949 - AMB_RS04660 0.76 -0.9
977,007 + AMB_RS04660 0.80 -0.4
977,007 + AMB_RS04660 0.80 +0.8
977,114 + AMB_RS04660 0.87 +0.2
977,114 + AMB_RS04660 0.87 -0.1
977,114 + AMB_RS04660 0.87 -0.3
977,114 + AMB_RS04660 0.87 -0.6
977,114 + AMB_RS04660 0.87 -0.3
977,114 + AMB_RS04660 0.87 +0.2
977,115 - AMB_RS04660 0.87 -0.0
977,115 - AMB_RS04660 0.87 +0.2
977,115 - AMB_RS04660 0.87 -0.3
977,115 - AMB_RS04660 0.87 -0.5
977,115 - AMB_RS04660 0.87 -1.9
977,115 - AMB_RS04660 0.87 +0.1
977,115 - AMB_RS04660 0.87 +0.7
977,115 - AMB_RS04660 0.87 -1.0
977,115 - AMB_RS04660 0.87 -0.1
977,303 - +0.3
977,326 - AMB_RS04665 0.14 -0.4
977,327 + AMB_RS04665 0.14 +0.4
977,327 + AMB_RS04665 0.14 -0.2
977,327 + AMB_RS04665 0.14 -0.3
977,327 + AMB_RS04665 0.14 -0.0
977,327 + AMB_RS04665 0.14 -1.4
977,328 - AMB_RS04665 0.15 -0.0
977,328 - AMB_RS04665 0.15 -1.2
977,353 + AMB_RS04665 0.25 +0.0
977,550 + -0.5
977,570 + -0.2
977,571 - +0.1
977,622 - -0.5
977,622 - +1.2
977,622 - -0.4
977,644 + +0.1
977,723 + -0.2
977,723 + -0.1
977,723 + +1.5
977,819 + -1.4
977,819 + -1.3
977,991 + -0.2
977,991 + -1.4
977,991 + -0.0
977,991 + -2.0
977,992 - +0.2
977,996 + -0.1
977,996 + -0.0
977,996 + -0.4
977,997 - -0.6
978,098 + AMB_RS04670 0.19 -0.4
978,098 + AMB_RS04670 0.19 -0.3
978,149 + AMB_RS04670 0.26 -0.1
978,150 - AMB_RS04670 0.26 +0.3
978,238 + AMB_RS04670 0.39 +0.5
978,238 + AMB_RS04670 0.39 -0.0
978,238 + AMB_RS04670 0.39 -0.8
978,238 + AMB_RS04670 0.39 -0.5
978,238 + AMB_RS04670 0.39 +0.1
978,239 - AMB_RS04670 0.39 -0.0
978,239 - AMB_RS04670 0.39 -1.5
978,239 - AMB_RS04670 0.39 -0.3
978,239 - AMB_RS04670 0.39 -0.0
978,387 + AMB_RS04670 0.60 -0.3
978,387 + AMB_RS04670 0.60 -0.0
978,387 + AMB_RS04670 0.60 +0.6
978,387 + AMB_RS04670 0.60 -0.6
978,387 + AMB_RS04670 0.60 -0.5
978,387 + AMB_RS04670 0.60 -0.9
978,388 - AMB_RS04670 0.60 -0.1
978,388 - AMB_RS04670 0.60 -0.1
978,388 - AMB_RS04670 0.60 -0.3
978,388 - AMB_RS04670 0.60 -0.8
978,391 + AMB_RS04670 0.60 -0.2
978,392 - AMB_RS04670 0.60 -1.8
978,432 + AMB_RS04670 0.66 -0.3
978,432 + AMB_RS04670 0.66 -1.2
978,432 + AMB_RS04670 0.66 -0.6
978,433 - AMB_RS04670 0.66 -0.1
978,433 - AMB_RS04670 0.66 +1.0
978,447 + AMB_RS04670 0.68 -0.4
978,447 + AMB_RS04670 0.68 +0.2
978,460 + AMB_RS04670 0.70 +0.4
978,522 + AMB_RS04670 0.78 +0.5
978,522 + AMB_RS04670 0.78 -0.5
978,522 + AMB_RS04670 0.78 +0.3

Or see this region's nucleotide sequence