Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04460

Experiment: 30_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04455 and AMB_RS04460 are separated by 76 nucleotidesAMB_RS04460 and AMB_RS04465 are separated by 112 nucleotides AMB_RS04455: AMB_RS04455 - energy-dependent translational throttle protein EttA, at 933,640 to 935,319 _RS04455 AMB_RS04460: AMB_RS04460 - hypothetical protein, at 935,396 to 935,791 _RS04460 AMB_RS04465: AMB_RS04465 - ribonuclease R, at 935,904 to 938,132 _RS04465 Position (kb) 935 936Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 934.438 kb on - strand, within AMB_RS04455at 934.438 kb on - strand, within AMB_RS04455at 934.577 kb on + strand, within AMB_RS04455at 934.577 kb on + strand, within AMB_RS04455at 934.577 kb on + strand, within AMB_RS04455at 934.577 kb on + strand, within AMB_RS04455at 934.577 kb on + strand, within AMB_RS04455at 934.577 kb on + strand, within AMB_RS04455at 934.577 kb on + strand, within AMB_RS04455at 934.577 kb on + strand, within AMB_RS04455at 934.577 kb on + strand, within AMB_RS04455at 934.577 kb on + strand, within AMB_RS04455at 934.578 kb on - strand, within AMB_RS04455at 934.578 kb on - strand, within AMB_RS04455at 934.589 kb on + strand, within AMB_RS04455at 934.590 kb on - strand, within AMB_RS04455at 934.590 kb on - strand, within AMB_RS04455at 934.649 kb on + strand, within AMB_RS04455at 934.650 kb on - strand, within AMB_RS04455at 934.650 kb on - strand, within AMB_RS04455at 934.650 kb on - strand, within AMB_RS04455at 934.685 kb on + strand, within AMB_RS04455at 934.686 kb on - strand, within AMB_RS04455at 934.686 kb on - strand, within AMB_RS04455at 934.686 kb on - strand, within AMB_RS04455at 934.686 kb on - strand, within AMB_RS04455at 934.686 kb on - strand, within AMB_RS04455at 935.096 kb on + strand, within AMB_RS04455at 935.096 kb on + strand, within AMB_RS04455at 935.097 kb on - strand, within AMB_RS04455at 935.097 kb on - strand, within AMB_RS04455at 935.138 kb on + strand, within AMB_RS04455at 935.139 kb on - strand, within AMB_RS04455at 935.270 kb on + strandat 935.297 kb on + strandat 935.297 kb on + strandat 935.297 kb on + strandat 935.297 kb on + strandat 935.297 kb on + strandat 935.297 kb on + strandat 935.297 kb on + strandat 935.297 kb on + strandat 935.297 kb on + strandat 935.297 kb on + strandat 935.298 kb on - strandat 935.298 kb on - strandat 935.298 kb on - strandat 935.298 kb on - strandat 935.298 kb on - strandat 935.298 kb on - strandat 935.298 kb on - strandat 935.298 kb on - strandat 935.298 kb on - strandat 935.298 kb on - strandat 935.298 kb on - strandat 935.298 kb on - strandat 935.298 kb on - strandat 935.303 kb on + strandat 935.303 kb on + strandat 935.303 kb on + strandat 935.303 kb on + strandat 935.303 kb on + strandat 935.303 kb on + strandat 935.303 kb on + strandat 935.303 kb on + strandat 935.304 kb on - strandat 935.304 kb on - strandat 935.304 kb on - strandat 935.304 kb on - strandat 935.304 kb on - strandat 935.309 kb on + strandat 935.309 kb on + strandat 935.309 kb on + strandat 935.310 kb on - strandat 935.310 kb on - strandat 935.310 kb on - strandat 935.310 kb on - strandat 935.361 kb on + strandat 935.582 kb on + strand, within AMB_RS04460at 935.711 kb on + strand, within AMB_RS04460at 935.774 kb on + strandat 935.774 kb on + strandat 935.775 kb on - strandat 935.775 kb on - strandat 935.890 kb on + strandat 935.891 kb on - strandat 935.891 kb on - strandat 935.892 kb on + strandat 935.893 kb on - strandat 936.190 kb on - strand, within AMB_RS04465at 936.190 kb on - strand, within AMB_RS04465at 936.190 kb on - strand, within AMB_RS04465at 936.309 kb on + strand, within AMB_RS04465at 936.309 kb on + strand, within AMB_RS04465at 936.309 kb on + strand, within AMB_RS04465at 936.309 kb on + strand, within AMB_RS04465at 936.310 kb on - strand, within AMB_RS04465at 936.310 kb on - strand, within AMB_RS04465at 936.429 kb on + strand, within AMB_RS04465at 936.429 kb on + strand, within AMB_RS04465at 936.429 kb on + strand, within AMB_RS04465at 936.429 kb on + strand, within AMB_RS04465at 936.429 kb on + strand, within AMB_RS04465at 936.430 kb on - strand, within AMB_RS04465at 936.430 kb on - strand, within AMB_RS04465at 936.430 kb on - strand, within AMB_RS04465at 936.430 kb on - strand, within AMB_RS04465at 936.430 kb on - strand, within AMB_RS04465at 936.430 kb on - strand, within AMB_RS04465at 936.431 kb on + strand, within AMB_RS04465at 936.431 kb on + strand, within AMB_RS04465at 936.431 kb on + strand, within AMB_RS04465at 936.431 kb on + strand, within AMB_RS04465at 936.431 kb on + strand, within AMB_RS04465at 936.431 kb on + strand, within AMB_RS04465at 936.431 kb on + strand, within AMB_RS04465at 936.431 kb on + strand, within AMB_RS04465at 936.431 kb on + strand, within AMB_RS04465at 936.431 kb on + strand, within AMB_RS04465at 936.432 kb on - strand, within AMB_RS04465at 936.432 kb on - strand, within AMB_RS04465at 936.432 kb on - strand, within AMB_RS04465at 936.432 kb on - strand, within AMB_RS04465at 936.432 kb on - strand, within AMB_RS04465at 936.432 kb on - strand, within AMB_RS04465at 936.432 kb on - strand, within AMB_RS04465at 936.432 kb on - strand, within AMB_RS04465at 936.507 kb on + strand, within AMB_RS04465at 936.508 kb on - strand, within AMB_RS04465at 936.508 kb on - strand, within AMB_RS04465at 936.583 kb on + strand, within AMB_RS04465at 936.583 kb on + strand, within AMB_RS04465at 936.583 kb on + strand, within AMB_RS04465at 936.583 kb on + strand, within AMB_RS04465at 936.583 kb on + strand, within AMB_RS04465at 936.583 kb on + strand, within AMB_RS04465at 936.584 kb on - strand, within AMB_RS04465at 936.584 kb on - strand, within AMB_RS04465at 936.584 kb on - strand, within AMB_RS04465at 936.584 kb on - strand, within AMB_RS04465at 936.584 kb on - strand, within AMB_RS04465at 936.584 kb on - strand, within AMB_RS04465

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_initial_2
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934,438 - AMB_RS04455 0.47 +0.2
934,438 - AMB_RS04455 0.47 -0.0
934,577 + AMB_RS04455 0.56 -0.4
934,577 + AMB_RS04455 0.56 -1.3
934,577 + AMB_RS04455 0.56 -0.9
934,577 + AMB_RS04455 0.56 -0.0
934,577 + AMB_RS04455 0.56 -0.8
934,577 + AMB_RS04455 0.56 -1.0
934,577 + AMB_RS04455 0.56 -0.8
934,577 + AMB_RS04455 0.56 +0.1
934,577 + AMB_RS04455 0.56 -0.2
934,577 + AMB_RS04455 0.56 -0.4
934,578 - AMB_RS04455 0.56 +1.2
934,578 - AMB_RS04455 0.56 -0.7
934,589 + AMB_RS04455 0.56 -0.6
934,590 - AMB_RS04455 0.57 +0.3
934,590 - AMB_RS04455 0.57 -1.4
934,649 + AMB_RS04455 0.60 -0.5
934,650 - AMB_RS04455 0.60 -0.5
934,650 - AMB_RS04455 0.60 -1.0
934,650 - AMB_RS04455 0.60 -1.6
934,685 + AMB_RS04455 0.62 -0.5
934,686 - AMB_RS04455 0.62 -1.7
934,686 - AMB_RS04455 0.62 -0.3
934,686 - AMB_RS04455 0.62 -1.7
934,686 - AMB_RS04455 0.62 +0.1
934,686 - AMB_RS04455 0.62 -0.8
935,096 + AMB_RS04455 0.87 +0.1
935,096 + AMB_RS04455 0.87 -0.0
935,097 - AMB_RS04455 0.87 -1.0
935,097 - AMB_RS04455 0.87 +0.0
935,138 + AMB_RS04455 0.89 -0.6
935,139 - AMB_RS04455 0.89 -0.4
935,270 + -0.8
935,297 + -2.4
935,297 + -0.9
935,297 + -1.9
935,297 + -2.2
935,297 + -0.8
935,297 + -3.2
935,297 + +0.5
935,297 + -3.5
935,297 + -0.3
935,297 + +0.0
935,298 - -1.0
935,298 - -0.2
935,298 - +0.4
935,298 - -0.9
935,298 - -1.0
935,298 - -0.4
935,298 - +0.3
935,298 - -2.2
935,298 - +0.0
935,298 - -0.4
935,298 - -0.1
935,298 - +1.7
935,298 - -0.1
935,303 + -0.2
935,303 + -0.7
935,303 + -0.7
935,303 + -0.7
935,303 + +0.6
935,303 + -1.4
935,303 + +0.5
935,303 + -1.3
935,304 - +0.3
935,304 - -0.5
935,304 - -0.3
935,304 - -1.4
935,304 - -0.5
935,309 + -0.9
935,309 + -0.4
935,309 + -2.9
935,310 - -0.1
935,310 - -0.0
935,310 - -0.1
935,310 - -0.3
935,361 + +0.1
935,582 + AMB_RS04460 0.47 -2.2
935,711 + AMB_RS04460 0.80 -0.6
935,774 + +0.1
935,774 + -0.5
935,775 - +0.2
935,775 - -0.2
935,890 + -3.9
935,891 - -0.2
935,891 - -0.2
935,892 + -0.5
935,893 - +1.5
936,190 - AMB_RS04465 0.13 -0.4
936,190 - AMB_RS04465 0.13 +0.1
936,190 - AMB_RS04465 0.13 -0.4
936,309 + AMB_RS04465 0.18 -0.6
936,309 + AMB_RS04465 0.18 +0.4
936,309 + AMB_RS04465 0.18 -0.9
936,309 + AMB_RS04465 0.18 +0.0
936,310 - AMB_RS04465 0.18 +0.0
936,310 - AMB_RS04465 0.18 -0.5
936,429 + AMB_RS04465 0.24 -0.5
936,429 + AMB_RS04465 0.24 +0.2
936,429 + AMB_RS04465 0.24 +0.8
936,429 + AMB_RS04465 0.24 -0.3
936,429 + AMB_RS04465 0.24 -1.0
936,430 - AMB_RS04465 0.24 +0.1
936,430 - AMB_RS04465 0.24 -0.6
936,430 - AMB_RS04465 0.24 -0.4
936,430 - AMB_RS04465 0.24 +0.3
936,430 - AMB_RS04465 0.24 -0.5
936,430 - AMB_RS04465 0.24 -1.4
936,431 + AMB_RS04465 0.24 -2.2
936,431 + AMB_RS04465 0.24 +0.3
936,431 + AMB_RS04465 0.24 +0.3
936,431 + AMB_RS04465 0.24 +1.5
936,431 + AMB_RS04465 0.24 +0.8
936,431 + AMB_RS04465 0.24 -0.3
936,431 + AMB_RS04465 0.24 -0.5
936,431 + AMB_RS04465 0.24 +0.1
936,431 + AMB_RS04465 0.24 -0.9
936,431 + AMB_RS04465 0.24 +0.2
936,432 - AMB_RS04465 0.24 +0.5
936,432 - AMB_RS04465 0.24 -0.0
936,432 - AMB_RS04465 0.24 -0.0
936,432 - AMB_RS04465 0.24 -0.3
936,432 - AMB_RS04465 0.24 -1.2
936,432 - AMB_RS04465 0.24 -1.0
936,432 - AMB_RS04465 0.24 -0.3
936,432 - AMB_RS04465 0.24 -0.5
936,507 + AMB_RS04465 0.27 +0.4
936,508 - AMB_RS04465 0.27 -0.3
936,508 - AMB_RS04465 0.27 -0.5
936,583 + AMB_RS04465 0.30 -0.0
936,583 + AMB_RS04465 0.30 -0.2
936,583 + AMB_RS04465 0.30 -0.2
936,583 + AMB_RS04465 0.30 -0.1
936,583 + AMB_RS04465 0.30 -0.0
936,583 + AMB_RS04465 0.30 +0.3
936,584 - AMB_RS04465 0.31 -0.2
936,584 - AMB_RS04465 0.31 +0.2
936,584 - AMB_RS04465 0.31 -0.5
936,584 - AMB_RS04465 0.31 -0.1
936,584 - AMB_RS04465 0.31 -0.3
936,584 - AMB_RS04465 0.31 -0.0

Or see this region's nucleotide sequence