Experiment: 30_initial_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04405 and AMB_RS04410 are separated by 3 nucleotides AMB_RS04410 and AMB_RS04415 are separated by 65 nucleotides
AMB_RS04405: AMB_RS04405 - potassium transporter Kup, at 923,542 to 925,464
_RS04405
AMB_RS04410: AMB_RS04410 - potassium transporter Kup, at 925,468 to 927,357
_RS04410
AMB_RS04415: AMB_RS04415 - NAD-dependent protein deacylase, at 927,423 to 928,145
_RS04415
Position (kb) 925
926
927
928 Strain fitness (log2 ratio) -1
0
1 at 924.582 kb on - strand, within AMB_RS04405 at 925.330 kb on - strand at 925.470 kb on - strand at 925.470 kb on - strand at 925.470 kb on - strand at 925.470 kb on - strand at 925.470 kb on - strand at 925.653 kb on - strand at 927.400 kb on - strand at 927.400 kb on - strand at 927.459 kb on + strand at 927.459 kb on + strand at 927.459 kb on + strand at 927.524 kb on + strand, within AMB_RS04415 at 927.843 kb on + strand, within AMB_RS04415 at 927.843 kb on + strand, within AMB_RS04415 at 927.844 kb on - strand, within AMB_RS04415 at 927.844 kb on - strand, within AMB_RS04415 at 927.844 kb on - strand, within AMB_RS04415 at 927.970 kb on + strand, within AMB_RS04415 at 927.970 kb on + strand, within AMB_RS04415 at 927.970 kb on + strand, within AMB_RS04415 at 927.970 kb on + strand, within AMB_RS04415 at 927.970 kb on + strand, within AMB_RS04415 at 927.971 kb on - strand, within AMB_RS04415 at 928.264 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_initial_2 remove 924,582 - AMB_RS04405 0.54 -1.0 925,330 - -1.3 925,470 - -0.7 925,470 - -0.4 925,470 - +0.7 925,470 - -0.0 925,470 - +0.8 925,653 - -0.2 927,400 - -0.5 927,400 - -0.0 927,459 + +0.9 927,459 + -0.7 927,459 + -0.5 927,524 + AMB_RS04415 0.14 +0.8 927,843 + AMB_RS04415 0.58 -1.6 927,843 + AMB_RS04415 0.58 +0.4 927,844 - AMB_RS04415 0.58 -0.0 927,844 - AMB_RS04415 0.58 -1.0 927,844 - AMB_RS04415 0.58 +0.1 927,970 + AMB_RS04415 0.76 -0.0 927,970 + AMB_RS04415 0.76 +0.1 927,970 + AMB_RS04415 0.76 +0.5 927,970 + AMB_RS04415 0.76 -0.2 927,970 + AMB_RS04415 0.76 -0.8 927,971 - AMB_RS04415 0.76 +0.6 928,264 + +0.1
Or see this region's nucleotide sequence