Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04060

Experiment: 30_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04055 and AMB_RS04060 are separated by 146 nucleotidesAMB_RS04060 and AMB_RS04065 are separated by 92 nucleotides AMB_RS04055: AMB_RS04055 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 849,255 to 850,427 _RS04055 AMB_RS04060: AMB_RS04060 - pyridoxal phosphate-dependent aminotransferase, at 850,574 to 851,740 _RS04060 AMB_RS04065: AMB_RS04065 - class I SAM-dependent methyltransferase, at 851,833 to 852,636 _RS04065 Position (kb) 850 851 852Strain fitness (log2 ratio) -3 -2 -1 0 1at 849.714 kb on + strand, within AMB_RS04055at 849.715 kb on - strand, within AMB_RS04055at 849.818 kb on + strand, within AMB_RS04055at 849.818 kb on + strand, within AMB_RS04055at 849.818 kb on + strand, within AMB_RS04055at 849.819 kb on - strand, within AMB_RS04055at 849.933 kb on + strand, within AMB_RS04055at 849.934 kb on - strand, within AMB_RS04055at 849.934 kb on - strand, within AMB_RS04055at 849.934 kb on - strand, within AMB_RS04055at 849.934 kb on - strand, within AMB_RS04055at 849.957 kb on + strand, within AMB_RS04055at 849.958 kb on - strand, within AMB_RS04055at 849.958 kb on - strand, within AMB_RS04055at 849.958 kb on - strand, within AMB_RS04055at 849.958 kb on - strand, within AMB_RS04055at 849.987 kb on + strand, within AMB_RS04055at 849.987 kb on + strand, within AMB_RS04055at 849.987 kb on + strand, within AMB_RS04055at 849.987 kb on + strand, within AMB_RS04055at 849.987 kb on + strand, within AMB_RS04055at 849.987 kb on + strand, within AMB_RS04055at 849.987 kb on + strand, within AMB_RS04055at 849.987 kb on + strand, within AMB_RS04055at 849.988 kb on - strand, within AMB_RS04055at 849.988 kb on - strand, within AMB_RS04055at 849.988 kb on - strand, within AMB_RS04055at 849.988 kb on - strand, within AMB_RS04055at 850.245 kb on - strand, within AMB_RS04055at 850.287 kb on + strand, within AMB_RS04055at 850.287 kb on + strand, within AMB_RS04055at 850.287 kb on + strand, within AMB_RS04055at 850.288 kb on - strand, within AMB_RS04055at 850.288 kb on - strand, within AMB_RS04055at 850.288 kb on - strand, within AMB_RS04055at 850.288 kb on - strand, within AMB_RS04055at 850.293 kb on + strand, within AMB_RS04055at 850.293 kb on + strand, within AMB_RS04055at 850.293 kb on + strand, within AMB_RS04055at 850.293 kb on + strand, within AMB_RS04055at 850.293 kb on + strand, within AMB_RS04055at 850.293 kb on + strand, within AMB_RS04055at 850.294 kb on - strand, within AMB_RS04055at 850.294 kb on - strand, within AMB_RS04055at 850.415 kb on + strandat 850.415 kb on + strandat 850.497 kb on + strandat 850.497 kb on + strandat 850.497 kb on + strandat 850.498 kb on - strandat 850.498 kb on - strandat 850.498 kb on - strandat 850.498 kb on - strandat 850.498 kb on - strandat 850.501 kb on + strandat 850.561 kb on + strandat 850.562 kb on - strandat 850.776 kb on + strand, within AMB_RS04060at 850.777 kb on - strand, within AMB_RS04060at 850.879 kb on + strand, within AMB_RS04060at 850.879 kb on + strand, within AMB_RS04060at 850.879 kb on + strand, within AMB_RS04060at 850.880 kb on - strand, within AMB_RS04060at 850.880 kb on - strand, within AMB_RS04060at 850.880 kb on - strand, within AMB_RS04060at 850.880 kb on - strand, within AMB_RS04060at 850.881 kb on + strand, within AMB_RS04060at 850.881 kb on + strand, within AMB_RS04060at 850.881 kb on + strand, within AMB_RS04060at 850.881 kb on + strand, within AMB_RS04060at 850.881 kb on + strand, within AMB_RS04060at 850.882 kb on - strand, within AMB_RS04060at 850.882 kb on - strand, within AMB_RS04060at 850.882 kb on - strand, within AMB_RS04060at 850.882 kb on - strand, within AMB_RS04060at 850.882 kb on - strand, within AMB_RS04060at 851.118 kb on + strand, within AMB_RS04060at 851.118 kb on + strand, within AMB_RS04060at 851.119 kb on - strand, within AMB_RS04060at 851.194 kb on - strand, within AMB_RS04060at 851.194 kb on - strand, within AMB_RS04060at 851.352 kb on + strand, within AMB_RS04060at 851.352 kb on + strand, within AMB_RS04060at 851.352 kb on + strand, within AMB_RS04060at 851.352 kb on + strand, within AMB_RS04060at 851.353 kb on - strand, within AMB_RS04060at 851.353 kb on - strand, within AMB_RS04060at 851.378 kb on + strand, within AMB_RS04060at 851.378 kb on + strand, within AMB_RS04060at 851.379 kb on - strand, within AMB_RS04060at 851.539 kb on + strand, within AMB_RS04060at 851.541 kb on + strand, within AMB_RS04060at 851.541 kb on + strand, within AMB_RS04060at 851.542 kb on - strand, within AMB_RS04060at 851.631 kb on + strandat 851.631 kb on + strandat 851.631 kb on + strandat 851.631 kb on + strandat 851.631 kb on + strandat 851.632 kb on - strandat 851.745 kb on - strandat 851.801 kb on + strandat 851.801 kb on + strandat 851.801 kb on + strandat 851.801 kb on + strandat 851.802 kb on - strandat 851.802 kb on - strandat 851.802 kb on - strandat 851.802 kb on - strandat 851.802 kb on - strandat 851.806 kb on + strandat 851.806 kb on + strandat 851.807 kb on - strandat 851.810 kb on - strandat 851.927 kb on + strand, within AMB_RS04065at 851.955 kb on - strand, within AMB_RS04065at 851.955 kb on - strand, within AMB_RS04065at 851.955 kb on - strand, within AMB_RS04065at 852.105 kb on + strand, within AMB_RS04065at 852.105 kb on + strand, within AMB_RS04065at 852.105 kb on + strand, within AMB_RS04065at 852.105 kb on + strand, within AMB_RS04065at 852.105 kb on + strand, within AMB_RS04065at 852.105 kb on + strand, within AMB_RS04065at 852.106 kb on - strand, within AMB_RS04065at 852.106 kb on - strand, within AMB_RS04065at 852.106 kb on - strand, within AMB_RS04065at 852.106 kb on - strand, within AMB_RS04065at 852.179 kb on + strand, within AMB_RS04065at 852.180 kb on - strand, within AMB_RS04065at 852.180 kb on - strand, within AMB_RS04065at 852.188 kb on + strand, within AMB_RS04065at 852.189 kb on - strand, within AMB_RS04065at 852.189 kb on - strand, within AMB_RS04065at 852.443 kb on + strand, within AMB_RS04065at 852.443 kb on + strand, within AMB_RS04065at 852.516 kb on - strand, within AMB_RS04065at 852.516 kb on - strand, within AMB_RS04065at 852.589 kb on - strandat 852.589 kb on - strandat 852.590 kb on + strandat 852.591 kb on - strandat 852.647 kb on - strandat 852.684 kb on + strandat 852.684 kb on + strandat 852.684 kb on + strandat 852.684 kb on + strandat 852.684 kb on + strandat 852.684 kb on + strandat 852.685 kb on - strandat 852.685 kb on - strandat 852.685 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_initial_2
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849,714 + AMB_RS04055 0.39 -0.0
849,715 - AMB_RS04055 0.39 +0.3
849,818 + AMB_RS04055 0.48 +0.4
849,818 + AMB_RS04055 0.48 -0.0
849,818 + AMB_RS04055 0.48 -0.7
849,819 - AMB_RS04055 0.48 -0.6
849,933 + AMB_RS04055 0.58 -0.1
849,934 - AMB_RS04055 0.58 -0.0
849,934 - AMB_RS04055 0.58 -0.3
849,934 - AMB_RS04055 0.58 +0.3
849,934 - AMB_RS04055 0.58 +1.1
849,957 + AMB_RS04055 0.60 -0.3
849,958 - AMB_RS04055 0.60 -1.0
849,958 - AMB_RS04055 0.60 -0.0
849,958 - AMB_RS04055 0.60 -0.5
849,958 - AMB_RS04055 0.60 +0.2
849,987 + AMB_RS04055 0.62 +0.8
849,987 + AMB_RS04055 0.62 -1.6
849,987 + AMB_RS04055 0.62 -0.5
849,987 + AMB_RS04055 0.62 -0.2
849,987 + AMB_RS04055 0.62 +0.1
849,987 + AMB_RS04055 0.62 -0.0
849,987 + AMB_RS04055 0.62 +0.4
849,987 + AMB_RS04055 0.62 -1.0
849,988 - AMB_RS04055 0.62 -0.0
849,988 - AMB_RS04055 0.62 +0.1
849,988 - AMB_RS04055 0.62 -2.6
849,988 - AMB_RS04055 0.62 -0.3
850,245 - AMB_RS04055 0.84 -0.3
850,287 + AMB_RS04055 0.88 -1.5
850,287 + AMB_RS04055 0.88 -0.3
850,287 + AMB_RS04055 0.88 +0.1
850,288 - AMB_RS04055 0.88 +0.9
850,288 - AMB_RS04055 0.88 -0.4
850,288 - AMB_RS04055 0.88 +0.1
850,288 - AMB_RS04055 0.88 -0.3
850,293 + AMB_RS04055 0.88 +1.3
850,293 + AMB_RS04055 0.88 +0.1
850,293 + AMB_RS04055 0.88 -0.3
850,293 + AMB_RS04055 0.88 -0.2
850,293 + AMB_RS04055 0.88 -0.1
850,293 + AMB_RS04055 0.88 -1.0
850,294 - AMB_RS04055 0.89 +1.3
850,294 - AMB_RS04055 0.89 -0.6
850,415 + +0.6
850,415 + +0.1
850,497 + -1.1
850,497 + -0.0
850,497 + -0.4
850,498 - -0.3
850,498 - -0.0
850,498 - -0.5
850,498 - -0.6
850,498 - -1.0
850,501 + -0.3
850,561 + +0.2
850,562 - -0.8
850,776 + AMB_RS04060 0.17 -1.2
850,777 - AMB_RS04060 0.17 -0.8
850,879 + AMB_RS04060 0.26 -1.4
850,879 + AMB_RS04060 0.26 -1.0
850,879 + AMB_RS04060 0.26 -1.5
850,880 - AMB_RS04060 0.26 -1.4
850,880 - AMB_RS04060 0.26 -1.0
850,880 - AMB_RS04060 0.26 -1.2
850,880 - AMB_RS04060 0.26 -1.0
850,881 + AMB_RS04060 0.26 -1.4
850,881 + AMB_RS04060 0.26 +0.3
850,881 + AMB_RS04060 0.26 -1.6
850,881 + AMB_RS04060 0.26 -1.1
850,881 + AMB_RS04060 0.26 -0.0
850,882 - AMB_RS04060 0.26 -1.6
850,882 - AMB_RS04060 0.26 -1.0
850,882 - AMB_RS04060 0.26 -0.9
850,882 - AMB_RS04060 0.26 -1.3
850,882 - AMB_RS04060 0.26 -1.0
851,118 + AMB_RS04060 0.47 -0.1
851,118 + AMB_RS04060 0.47 -0.9
851,119 - AMB_RS04060 0.47 -1.0
851,194 - AMB_RS04060 0.53 -2.3
851,194 - AMB_RS04060 0.53 -3.0
851,352 + AMB_RS04060 0.67 -1.1
851,352 + AMB_RS04060 0.67 -0.5
851,352 + AMB_RS04060 0.67 -0.8
851,352 + AMB_RS04060 0.67 -0.8
851,353 - AMB_RS04060 0.67 -1.0
851,353 - AMB_RS04060 0.67 -1.4
851,378 + AMB_RS04060 0.69 -0.7
851,378 + AMB_RS04060 0.69 -0.9
851,379 - AMB_RS04060 0.69 -0.9
851,539 + AMB_RS04060 0.83 -0.5
851,541 + AMB_RS04060 0.83 -2.9
851,541 + AMB_RS04060 0.83 -0.2
851,542 - AMB_RS04060 0.83 -1.2
851,631 + -0.4
851,631 + -0.5
851,631 + -0.7
851,631 + -1.2
851,631 + -0.9
851,632 - -1.1
851,745 - +0.0
851,801 + -0.0
851,801 + -0.2
851,801 + -0.9
851,801 + -3.0
851,802 - -0.0
851,802 - -0.1
851,802 - -0.6
851,802 - -0.6
851,802 - -1.3
851,806 + -1.0
851,806 + -0.6
851,807 - +0.1
851,810 - +0.7
851,927 + AMB_RS04065 0.12 +0.4
851,955 - AMB_RS04065 0.15 +0.5
851,955 - AMB_RS04065 0.15 -0.2
851,955 - AMB_RS04065 0.15 -0.1
852,105 + AMB_RS04065 0.34 +0.2
852,105 + AMB_RS04065 0.34 -0.6
852,105 + AMB_RS04065 0.34 -1.3
852,105 + AMB_RS04065 0.34 -0.1
852,105 + AMB_RS04065 0.34 +0.4
852,105 + AMB_RS04065 0.34 -0.2
852,106 - AMB_RS04065 0.34 +0.1
852,106 - AMB_RS04065 0.34 +0.5
852,106 - AMB_RS04065 0.34 -0.6
852,106 - AMB_RS04065 0.34 +0.1
852,179 + AMB_RS04065 0.43 +1.5
852,180 - AMB_RS04065 0.43 -0.0
852,180 - AMB_RS04065 0.43 +0.1
852,188 + AMB_RS04065 0.44 +0.0
852,189 - AMB_RS04065 0.44 +0.7
852,189 - AMB_RS04065 0.44 -2.1
852,443 + AMB_RS04065 0.76 -0.7
852,443 + AMB_RS04065 0.76 +0.1
852,516 - AMB_RS04065 0.85 +0.8
852,516 - AMB_RS04065 0.85 +0.0
852,589 - -0.2
852,589 - -0.3
852,590 + -0.7
852,591 - -0.1
852,647 - -0.8
852,684 + +0.1
852,684 + -0.3
852,684 + -1.3
852,684 + -0.0
852,684 + +0.3
852,684 + +0.0
852,685 - +0.5
852,685 - +0.4
852,685 - -1.9

Or see this region's nucleotide sequence