Experiment: 30_initial_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04045 and AMB_RS04050 are separated by 28 nucleotides AMB_RS04050 and AMB_RS04055 are separated by 71 nucleotides
AMB_RS04045: AMB_RS04045 - B12-binding domain-containing radical SAM protein, at 845,817 to 847,313
_RS04045
AMB_RS04050: AMB_RS04050 - thiamine pyrophosphate-binding protein, at 847,342 to 849,183
_RS04050
AMB_RS04055: AMB_RS04055 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 849,255 to 850,427
_RS04055
Position (kb) 847
848
849
850 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 846.465 kb on + strand, within AMB_RS04045 at 846.466 kb on - strand, within AMB_RS04045 at 846.466 kb on - strand, within AMB_RS04045 at 846.466 kb on - strand, within AMB_RS04045 at 846.466 kb on - strand, within AMB_RS04045 at 846.603 kb on + strand, within AMB_RS04045 at 846.604 kb on - strand, within AMB_RS04045 at 846.668 kb on + strand, within AMB_RS04045 at 846.668 kb on + strand, within AMB_RS04045 at 846.669 kb on - strand, within AMB_RS04045 at 846.718 kb on - strand, within AMB_RS04045 at 846.816 kb on + strand, within AMB_RS04045 at 846.871 kb on + strand, within AMB_RS04045 at 846.901 kb on - strand, within AMB_RS04045 at 846.901 kb on - strand, within AMB_RS04045 at 846.901 kb on - strand, within AMB_RS04045 at 846.915 kb on + strand, within AMB_RS04045 at 846.916 kb on - strand, within AMB_RS04045 at 846.918 kb on - strand, within AMB_RS04045 at 846.918 kb on - strand, within AMB_RS04045 at 846.918 kb on - strand, within AMB_RS04045 at 846.918 kb on - strand, within AMB_RS04045 at 847.104 kb on + strand, within AMB_RS04045 at 847.105 kb on - strand, within AMB_RS04045 at 847.198 kb on - strand at 847.198 kb on - strand at 847.215 kb on + strand at 847.216 kb on - strand at 847.311 kb on + strand at 847.312 kb on - strand at 847.312 kb on - strand at 847.312 kb on - strand at 847.338 kb on + strand at 847.338 kb on + strand at 847.338 kb on + strand at 847.339 kb on - strand at 847.357 kb on + strand at 847.357 kb on + strand at 847.357 kb on + strand at 847.357 kb on + strand at 847.357 kb on + strand at 847.357 kb on + strand at 847.357 kb on + strand at 847.358 kb on - strand at 847.358 kb on - strand at 847.358 kb on - strand at 847.408 kb on + strand at 847.465 kb on + strand at 847.465 kb on + strand at 847.465 kb on + strand at 847.465 kb on + strand at 847.465 kb on + strand at 847.465 kb on + strand at 847.466 kb on - strand at 847.466 kb on - strand at 847.513 kb on + strand at 847.514 kb on - strand at 847.514 kb on - strand at 847.514 kb on - strand at 847.514 kb on - strand at 847.514 kb on - strand at 847.603 kb on + strand, within AMB_RS04050 at 847.732 kb on + strand, within AMB_RS04050 at 847.732 kb on + strand, within AMB_RS04050 at 847.732 kb on + strand, within AMB_RS04050 at 847.831 kb on - strand, within AMB_RS04050 at 847.945 kb on + strand, within AMB_RS04050 at 847.945 kb on + strand, within AMB_RS04050 at 847.945 kb on + strand, within AMB_RS04050 at 847.945 kb on + strand, within AMB_RS04050 at 847.945 kb on + strand, within AMB_RS04050 at 847.946 kb on - strand, within AMB_RS04050 at 847.946 kb on - strand, within AMB_RS04050 at 847.946 kb on - strand, within AMB_RS04050 at 847.946 kb on - strand, within AMB_RS04050 at 847.946 kb on - strand, within AMB_RS04050 at 848.131 kb on + strand, within AMB_RS04050 at 848.131 kb on + strand, within AMB_RS04050 at 848.131 kb on + strand, within AMB_RS04050 at 848.131 kb on + strand, within AMB_RS04050 at 848.131 kb on + strand, within AMB_RS04050 at 848.132 kb on - strand, within AMB_RS04050 at 848.132 kb on - strand, within AMB_RS04050 at 848.132 kb on - strand, within AMB_RS04050 at 848.132 kb on - strand, within AMB_RS04050 at 848.149 kb on - strand, within AMB_RS04050 at 848.254 kb on + strand, within AMB_RS04050 at 848.254 kb on + strand, within AMB_RS04050 at 848.254 kb on + strand, within AMB_RS04050 at 848.254 kb on + strand, within AMB_RS04050 at 848.255 kb on - strand, within AMB_RS04050 at 848.255 kb on - strand, within AMB_RS04050 at 848.255 kb on - strand, within AMB_RS04050 at 848.444 kb on - strand, within AMB_RS04050 at 848.444 kb on - strand, within AMB_RS04050 at 848.494 kb on + strand, within AMB_RS04050 at 848.495 kb on - strand, within AMB_RS04050 at 848.539 kb on - strand, within AMB_RS04050 at 848.688 kb on + strand, within AMB_RS04050 at 848.689 kb on - strand, within AMB_RS04050 at 848.689 kb on - strand, within AMB_RS04050 at 848.689 kb on - strand, within AMB_RS04050 at 848.803 kb on + strand, within AMB_RS04050 at 848.803 kb on + strand, within AMB_RS04050 at 848.803 kb on + strand, within AMB_RS04050 at 848.803 kb on + strand, within AMB_RS04050 at 848.804 kb on - strand, within AMB_RS04050 at 848.804 kb on - strand, within AMB_RS04050 at 848.804 kb on - strand, within AMB_RS04050 at 848.804 kb on - strand, within AMB_RS04050 at 848.804 kb on - strand, within AMB_RS04050 at 848.804 kb on - strand, within AMB_RS04050 at 848.804 kb on - strand, within AMB_RS04050 at 848.821 kb on + strand, within AMB_RS04050 at 848.821 kb on + strand, within AMB_RS04050 at 848.822 kb on - strand, within AMB_RS04050 at 848.908 kb on + strand, within AMB_RS04050 at 849.016 kb on + strand at 849.017 kb on - strand at 849.017 kb on - strand at 849.017 kb on - strand at 849.026 kb on - strand at 849.026 kb on - strand at 849.026 kb on - strand at 849.036 kb on + strand at 849.036 kb on + strand at 849.070 kb on + strand at 849.070 kb on + strand at 849.070 kb on + strand at 849.070 kb on + strand at 849.070 kb on + strand at 849.070 kb on + strand at 849.070 kb on + strand at 849.070 kb on + strand at 849.070 kb on + strand at 849.070 kb on + strand at 849.070 kb on + strand at 849.070 kb on + strand at 849.070 kb on + strand at 849.071 kb on - strand at 849.071 kb on - strand at 849.071 kb on - strand at 849.071 kb on - strand at 849.071 kb on - strand at 849.071 kb on - strand at 849.077 kb on - strand at 849.077 kb on - strand at 849.224 kb on + strand at 849.224 kb on + strand at 849.224 kb on + strand at 849.224 kb on + strand at 849.225 kb on - strand at 849.225 kb on - strand at 849.225 kb on - strand at 849.261 kb on + strand at 849.261 kb on + strand at 849.261 kb on + strand at 849.261 kb on + strand at 849.261 kb on + strand at 849.261 kb on + strand at 849.261 kb on + strand at 849.261 kb on + strand at 849.262 kb on - strand at 849.262 kb on - strand at 849.262 kb on - strand at 849.262 kb on - strand at 849.333 kb on + strand at 849.334 kb on - strand at 849.334 kb on - strand at 849.381 kb on + strand, within AMB_RS04055 at 849.381 kb on + strand, within AMB_RS04055 at 849.381 kb on + strand, within AMB_RS04055 at 849.381 kb on + strand, within AMB_RS04055 at 849.383 kb on + strand, within AMB_RS04055 at 849.384 kb on - strand, within AMB_RS04055 at 849.384 kb on - strand, within AMB_RS04055 at 849.384 kb on - strand, within AMB_RS04055 at 849.544 kb on - strand, within AMB_RS04055 at 849.714 kb on + strand, within AMB_RS04055 at 849.715 kb on - strand, within AMB_RS04055 at 849.818 kb on + strand, within AMB_RS04055 at 849.818 kb on + strand, within AMB_RS04055 at 849.818 kb on + strand, within AMB_RS04055 at 849.819 kb on - strand, within AMB_RS04055 at 849.933 kb on + strand, within AMB_RS04055 at 849.934 kb on - strand, within AMB_RS04055 at 849.934 kb on - strand, within AMB_RS04055 at 849.934 kb on - strand, within AMB_RS04055 at 849.934 kb on - strand, within AMB_RS04055 at 849.957 kb on + strand, within AMB_RS04055 at 849.958 kb on - strand, within AMB_RS04055 at 849.958 kb on - strand, within AMB_RS04055 at 849.958 kb on - strand, within AMB_RS04055 at 849.958 kb on - strand, within AMB_RS04055 at 849.987 kb on + strand, within AMB_RS04055 at 849.987 kb on + strand, within AMB_RS04055 at 849.987 kb on + strand, within AMB_RS04055 at 849.987 kb on + strand, within AMB_RS04055 at 849.987 kb on + strand, within AMB_RS04055 at 849.987 kb on + strand, within AMB_RS04055 at 849.987 kb on + strand, within AMB_RS04055 at 849.987 kb on + strand, within AMB_RS04055 at 849.988 kb on - strand, within AMB_RS04055 at 849.988 kb on - strand, within AMB_RS04055 at 849.988 kb on - strand, within AMB_RS04055 at 849.988 kb on - strand, within AMB_RS04055
Per-strain Table
Position Strand Gene LocusTag Fraction 30_initial_2 remove 846,465 + AMB_RS04045 0.43 -1.0 846,466 - AMB_RS04045 0.43 -0.7 846,466 - AMB_RS04045 0.43 -1.5 846,466 - AMB_RS04045 0.43 +0.3 846,466 - AMB_RS04045 0.43 -2.6 846,603 + AMB_RS04045 0.53 -0.6 846,604 - AMB_RS04045 0.53 -1.9 846,668 + AMB_RS04045 0.57 +1.3 846,668 + AMB_RS04045 0.57 -2.9 846,669 - AMB_RS04045 0.57 -1.0 846,718 - AMB_RS04045 0.60 -1.2 846,816 + AMB_RS04045 0.67 -0.6 846,871 + AMB_RS04045 0.70 -1.0 846,901 - AMB_RS04045 0.72 -0.5 846,901 - AMB_RS04045 0.72 -0.6 846,901 - AMB_RS04045 0.72 -1.5 846,915 + AMB_RS04045 0.73 -0.2 846,916 - AMB_RS04045 0.73 -1.0 846,918 - AMB_RS04045 0.74 -1.4 846,918 - AMB_RS04045 0.74 -0.4 846,918 - AMB_RS04045 0.74 -1.4 846,918 - AMB_RS04045 0.74 -2.4 847,104 + AMB_RS04045 0.86 -1.5 847,105 - AMB_RS04045 0.86 -1.6 847,198 - -1.6 847,198 - -1.6 847,215 + -0.9 847,216 - -1.0 847,311 + +0.1 847,312 - -0.5 847,312 - -1.1 847,312 - -0.8 847,338 + -1.4 847,338 + -1.4 847,338 + +0.3 847,339 - -1.3 847,357 + -1.2 847,357 + -1.5 847,357 + -1.4 847,357 + -1.7 847,357 + -1.9 847,357 + -1.5 847,357 + -1.6 847,358 - +1.0 847,358 - -1.3 847,358 - -2.0 847,408 + -2.4 847,465 + -0.8 847,465 + -0.9 847,465 + -1.2 847,465 + -1.5 847,465 + -0.7 847,465 + -1.4 847,466 - -2.6 847,466 - -0.0 847,513 + -0.7 847,514 - -1.7 847,514 - -1.0 847,514 - -1.9 847,514 - -1.4 847,514 - -1.4 847,603 + AMB_RS04050 0.14 -0.9 847,732 + AMB_RS04050 0.21 -1.2 847,732 + AMB_RS04050 0.21 -1.7 847,732 + AMB_RS04050 0.21 -1.1 847,831 - AMB_RS04050 0.27 -1.8 847,945 + AMB_RS04050 0.33 -2.0 847,945 + AMB_RS04050 0.33 -2.1 847,945 + AMB_RS04050 0.33 -1.3 847,945 + AMB_RS04050 0.33 -0.6 847,945 + AMB_RS04050 0.33 -1.5 847,946 - AMB_RS04050 0.33 +0.7 847,946 - AMB_RS04050 0.33 -1.6 847,946 - AMB_RS04050 0.33 -0.5 847,946 - AMB_RS04050 0.33 -1.7 847,946 - AMB_RS04050 0.33 -2.9 848,131 + AMB_RS04050 0.43 -1.0 848,131 + AMB_RS04050 0.43 -2.5 848,131 + AMB_RS04050 0.43 -1.8 848,131 + AMB_RS04050 0.43 -1.0 848,131 + AMB_RS04050 0.43 -3.7 848,132 - AMB_RS04050 0.43 -1.4 848,132 - AMB_RS04050 0.43 -1.3 848,132 - AMB_RS04050 0.43 -1.0 848,132 - AMB_RS04050 0.43 -1.1 848,149 - AMB_RS04050 0.44 -0.2 848,254 + AMB_RS04050 0.50 -1.4 848,254 + AMB_RS04050 0.50 -2.0 848,254 + AMB_RS04050 0.50 -1.2 848,254 + AMB_RS04050 0.50 -1.3 848,255 - AMB_RS04050 0.50 -1.7 848,255 - AMB_RS04050 0.50 -1.0 848,255 - AMB_RS04050 0.50 -0.9 848,444 - AMB_RS04050 0.60 -1.6 848,444 - AMB_RS04050 0.60 -1.3 848,494 + AMB_RS04050 0.63 -0.4 848,495 - AMB_RS04050 0.63 -0.0 848,539 - AMB_RS04050 0.65 +0.3 848,688 + AMB_RS04050 0.73 -0.4 848,689 - AMB_RS04050 0.73 -0.3 848,689 - AMB_RS04050 0.73 -1.3 848,689 - AMB_RS04050 0.73 -2.2 848,803 + AMB_RS04050 0.79 -1.6 848,803 + AMB_RS04050 0.79 -2.0 848,803 + AMB_RS04050 0.79 -1.5 848,803 + AMB_RS04050 0.79 -2.4 848,804 - AMB_RS04050 0.79 -1.4 848,804 - AMB_RS04050 0.79 -1.1 848,804 - AMB_RS04050 0.79 -1.0 848,804 - AMB_RS04050 0.79 -2.0 848,804 - AMB_RS04050 0.79 -0.0 848,804 - AMB_RS04050 0.79 -0.9 848,804 - AMB_RS04050 0.79 -0.5 848,821 + AMB_RS04050 0.80 +1.0 848,821 + AMB_RS04050 0.80 -1.3 848,822 - AMB_RS04050 0.80 -2.4 848,908 + AMB_RS04050 0.85 -0.6 849,016 + -1.6 849,017 - -1.4 849,017 - -3.0 849,017 - -0.7 849,026 - -1.1 849,026 - -1.4 849,026 - +1.9 849,036 + -1.3 849,036 + -1.7 849,070 + -1.8 849,070 + -1.3 849,070 + -0.9 849,070 + -1.2 849,070 + -1.5 849,070 + -0.7 849,070 + -1.4 849,070 + -1.5 849,070 + -2.1 849,070 + -1.5 849,070 + -2.7 849,070 + +2.0 849,070 + -3.0 849,071 - -0.5 849,071 - -1.6 849,071 - -0.5 849,071 - -0.2 849,071 - -0.8 849,071 - -1.0 849,077 - -1.3 849,077 - -2.7 849,224 + -0.3 849,224 + +0.7 849,224 + -0.4 849,224 + -0.3 849,225 - +0.5 849,225 - +0.1 849,225 - +0.6 849,261 + -0.2 849,261 + -0.3 849,261 + -0.3 849,261 + +0.3 849,261 + -0.8 849,261 + -0.6 849,261 + -1.0 849,261 + +0.1 849,262 - +1.4 849,262 - +0.1 849,262 - +0.5 849,262 - -0.6 849,333 + +0.3 849,334 - -0.8 849,334 - -0.5 849,381 + AMB_RS04055 0.11 -0.5 849,381 + AMB_RS04055 0.11 +0.1 849,381 + AMB_RS04055 0.11 -0.1 849,381 + AMB_RS04055 0.11 -0.4 849,383 + AMB_RS04055 0.11 -0.2 849,384 - AMB_RS04055 0.11 +0.1 849,384 - AMB_RS04055 0.11 +0.1 849,384 - AMB_RS04055 0.11 -0.1 849,544 - AMB_RS04055 0.25 +0.8 849,714 + AMB_RS04055 0.39 -0.0 849,715 - AMB_RS04055 0.39 +0.3 849,818 + AMB_RS04055 0.48 +0.4 849,818 + AMB_RS04055 0.48 -0.0 849,818 + AMB_RS04055 0.48 -0.7 849,819 - AMB_RS04055 0.48 -0.6 849,933 + AMB_RS04055 0.58 -0.1 849,934 - AMB_RS04055 0.58 -0.0 849,934 - AMB_RS04055 0.58 -0.3 849,934 - AMB_RS04055 0.58 +0.3 849,934 - AMB_RS04055 0.58 +1.1 849,957 + AMB_RS04055 0.60 -0.3 849,958 - AMB_RS04055 0.60 -1.0 849,958 - AMB_RS04055 0.60 -0.0 849,958 - AMB_RS04055 0.60 -0.5 849,958 - AMB_RS04055 0.60 +0.2 849,987 + AMB_RS04055 0.62 +0.8 849,987 + AMB_RS04055 0.62 -1.6 849,987 + AMB_RS04055 0.62 -0.5 849,987 + AMB_RS04055 0.62 -0.2 849,987 + AMB_RS04055 0.62 +0.1 849,987 + AMB_RS04055 0.62 -0.0 849,987 + AMB_RS04055 0.62 +0.4 849,987 + AMB_RS04055 0.62 -1.0 849,988 - AMB_RS04055 0.62 -0.0 849,988 - AMB_RS04055 0.62 +0.1 849,988 - AMB_RS04055 0.62 -2.6 849,988 - AMB_RS04055 0.62 -0.3
Or see this region's nucleotide sequence