Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03930

Experiment: 30_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03925 and AMB_RS03930 are separated by 11 nucleotidesAMB_RS03930 and AMB_RS03935 are separated by 8 nucleotides AMB_RS03925: AMB_RS03925 - glycine cleavage system protein T, at 822,700 to 823,815 _RS03925 AMB_RS03930: AMB_RS03930 - glycine cleavage system protein H, at 823,827 to 824,204 _RS03930 AMB_RS03935: AMB_RS03935 - glycine dehydrogenase, at 824,213 to 825,562 _RS03935 Position (kb) 823 824 825Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 823.277 kb on - strand, within AMB_RS03925at 823.277 kb on - strand, within AMB_RS03925at 823.279 kb on - strand, within AMB_RS03925at 823.420 kb on + strand, within AMB_RS03925at 823.421 kb on - strand, within AMB_RS03925at 823.421 kb on - strand, within AMB_RS03925at 823.421 kb on - strand, within AMB_RS03925at 823.696 kb on + strand, within AMB_RS03925at 823.696 kb on + strand, within AMB_RS03925at 823.697 kb on - strand, within AMB_RS03925at 823.697 kb on - strand, within AMB_RS03925at 823.697 kb on - strand, within AMB_RS03925at 823.697 kb on - strand, within AMB_RS03925at 823.801 kb on + strandat 823.802 kb on - strandat 823.802 kb on - strandat 823.905 kb on + strand, within AMB_RS03930at 823.905 kb on + strand, within AMB_RS03930at 823.906 kb on - strand, within AMB_RS03930at 824.023 kb on - strand, within AMB_RS03930at 824.023 kb on - strand, within AMB_RS03930at 824.023 kb on - strand, within AMB_RS03930at 824.176 kb on - strandat 824.185 kb on - strandat 824.202 kb on + strandat 824.203 kb on - strandat 824.203 kb on - strandat 824.203 kb on - strandat 824.203 kb on - strandat 824.219 kb on + strandat 824.220 kb on - strandat 824.504 kb on + strand, within AMB_RS03935at 824.504 kb on + strand, within AMB_RS03935at 824.504 kb on + strand, within AMB_RS03935at 824.504 kb on + strand, within AMB_RS03935at 824.504 kb on + strand, within AMB_RS03935at 824.504 kb on + strand, within AMB_RS03935at 824.504 kb on + strand, within AMB_RS03935at 824.505 kb on - strand, within AMB_RS03935at 824.505 kb on - strand, within AMB_RS03935at 824.505 kb on - strand, within AMB_RS03935at 824.505 kb on - strand, within AMB_RS03935at 824.505 kb on - strand, within AMB_RS03935at 824.506 kb on + strand, within AMB_RS03935at 824.588 kb on - strand, within AMB_RS03935at 824.612 kb on + strand, within AMB_RS03935at 824.612 kb on + strand, within AMB_RS03935at 824.612 kb on + strand, within AMB_RS03935at 824.612 kb on + strand, within AMB_RS03935at 824.612 kb on + strand, within AMB_RS03935at 824.612 kb on + strand, within AMB_RS03935at 824.612 kb on + strand, within AMB_RS03935at 824.612 kb on + strand, within AMB_RS03935at 824.612 kb on + strand, within AMB_RS03935at 824.612 kb on + strand, within AMB_RS03935at 824.613 kb on - strand, within AMB_RS03935at 824.613 kb on - strand, within AMB_RS03935at 824.613 kb on - strand, within AMB_RS03935at 824.613 kb on - strand, within AMB_RS03935at 824.613 kb on - strand, within AMB_RS03935at 824.613 kb on - strand, within AMB_RS03935at 824.613 kb on - strand, within AMB_RS03935at 824.613 kb on - strand, within AMB_RS03935at 824.613 kb on - strand, within AMB_RS03935at 824.613 kb on - strand, within AMB_RS03935at 824.709 kb on - strand, within AMB_RS03935at 825.003 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.063 kb on + strand, within AMB_RS03935at 825.063 kb on - strand, within AMB_RS03935at 825.063 kb on - strand, within AMB_RS03935at 825.063 kb on - strand, within AMB_RS03935at 825.063 kb on - strand, within AMB_RS03935at 825.063 kb on - strand, within AMB_RS03935at 825.063 kb on - strand, within AMB_RS03935at 825.063 kb on - strand, within AMB_RS03935at 825.063 kb on - strand, within AMB_RS03935at 825.063 kb on - strand, within AMB_RS03935at 825.063 kb on - strand, within AMB_RS03935at 825.157 kb on + strand, within AMB_RS03935at 825.157 kb on + strand, within AMB_RS03935at 825.157 kb on + strand, within AMB_RS03935at 825.157 kb on + strand, within AMB_RS03935at 825.158 kb on - strand, within AMB_RS03935at 825.158 kb on - strand, within AMB_RS03935at 825.158 kb on - strand, within AMB_RS03935

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_initial_2
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823,277 - AMB_RS03925 0.52 +0.2
823,277 - AMB_RS03925 0.52 +0.2
823,279 - AMB_RS03925 0.52 +0.0
823,420 + AMB_RS03925 0.65 -1.0
823,421 - AMB_RS03925 0.65 +0.7
823,421 - AMB_RS03925 0.65 -2.4
823,421 - AMB_RS03925 0.65 -0.2
823,696 + AMB_RS03925 0.89 +1.5
823,696 + AMB_RS03925 0.89 -0.7
823,697 - AMB_RS03925 0.89 -0.3
823,697 - AMB_RS03925 0.89 -1.0
823,697 - AMB_RS03925 0.89 -0.4
823,697 - AMB_RS03925 0.89 -0.5
823,801 + +0.3
823,802 - +0.3
823,802 - -0.0
823,905 + AMB_RS03930 0.21 -0.6
823,905 + AMB_RS03930 0.21 -0.6
823,906 - AMB_RS03930 0.21 -0.1
824,023 - AMB_RS03930 0.52 +0.1
824,023 - AMB_RS03930 0.52 -0.3
824,023 - AMB_RS03930 0.52 -3.6
824,176 - -0.4
824,185 - -0.3
824,202 + +0.8
824,203 - +0.2
824,203 - -0.5
824,203 - -1.0
824,203 - -0.9
824,219 + -0.2
824,220 - -1.9
824,504 + AMB_RS03935 0.22 +0.2
824,504 + AMB_RS03935 0.22 -0.2
824,504 + AMB_RS03935 0.22 +0.1
824,504 + AMB_RS03935 0.22 +0.8
824,504 + AMB_RS03935 0.22 +0.0
824,504 + AMB_RS03935 0.22 +0.6
824,504 + AMB_RS03935 0.22 -1.0
824,505 - AMB_RS03935 0.22 +0.2
824,505 - AMB_RS03935 0.22 -0.7
824,505 - AMB_RS03935 0.22 -0.0
824,505 - AMB_RS03935 0.22 -1.2
824,505 - AMB_RS03935 0.22 +0.2
824,506 + AMB_RS03935 0.22 +0.7
824,588 - AMB_RS03935 0.28 -0.2
824,612 + AMB_RS03935 0.30 -1.6
824,612 + AMB_RS03935 0.30 -0.4
824,612 + AMB_RS03935 0.30 +0.1
824,612 + AMB_RS03935 0.30 -0.8
824,612 + AMB_RS03935 0.30 -0.2
824,612 + AMB_RS03935 0.30 -0.4
824,612 + AMB_RS03935 0.30 +0.7
824,612 + AMB_RS03935 0.30 +1.3
824,612 + AMB_RS03935 0.30 +1.8
824,612 + AMB_RS03935 0.30 -0.6
824,613 - AMB_RS03935 0.30 +0.6
824,613 - AMB_RS03935 0.30 +0.1
824,613 - AMB_RS03935 0.30 -0.6
824,613 - AMB_RS03935 0.30 +0.5
824,613 - AMB_RS03935 0.30 -0.0
824,613 - AMB_RS03935 0.30 +0.5
824,613 - AMB_RS03935 0.30 +0.0
824,613 - AMB_RS03935 0.30 -0.9
824,613 - AMB_RS03935 0.30 -0.1
824,613 - AMB_RS03935 0.30 +0.1
824,709 - AMB_RS03935 0.37 +1.2
825,003 + AMB_RS03935 0.59 +0.1
825,062 + AMB_RS03935 0.63 -0.5
825,062 + AMB_RS03935 0.63 -0.0
825,062 + AMB_RS03935 0.63 +0.1
825,062 + AMB_RS03935 0.63 +0.3
825,062 + AMB_RS03935 0.63 -2.0
825,062 + AMB_RS03935 0.63 -0.5
825,062 + AMB_RS03935 0.63 +0.4
825,062 + AMB_RS03935 0.63 -1.4
825,062 + AMB_RS03935 0.63 +0.4
825,062 + AMB_RS03935 0.63 -2.4
825,062 + AMB_RS03935 0.63 -0.1
825,062 + AMB_RS03935 0.63 -1.0
825,062 + AMB_RS03935 0.63 +0.0
825,062 + AMB_RS03935 0.63 -0.3
825,062 + AMB_RS03935 0.63 -0.4
825,062 + AMB_RS03935 0.63 +0.2
825,062 + AMB_RS03935 0.63 -0.1
825,063 + AMB_RS03935 0.63 -0.3
825,063 - AMB_RS03935 0.63 +0.2
825,063 - AMB_RS03935 0.63 -1.0
825,063 - AMB_RS03935 0.63 -2.0
825,063 - AMB_RS03935 0.63 -1.4
825,063 - AMB_RS03935 0.63 -0.6
825,063 - AMB_RS03935 0.63 -0.2
825,063 - AMB_RS03935 0.63 -0.0
825,063 - AMB_RS03935 0.63 -0.0
825,063 - AMB_RS03935 0.63 -1.9
825,063 - AMB_RS03935 0.63 -0.6
825,157 + AMB_RS03935 0.70 -0.6
825,157 + AMB_RS03935 0.70 +0.7
825,157 + AMB_RS03935 0.70 -1.0
825,157 + AMB_RS03935 0.70 -0.8
825,158 - AMB_RS03935 0.70 -0.1
825,158 - AMB_RS03935 0.70 -0.8
825,158 - AMB_RS03935 0.70 +0.2

Or see this region's nucleotide sequence