Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03855

Experiment: 30_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03850 and AMB_RS03855 are separated by 66 nucleotidesAMB_RS03855 and AMB_RS03860 are separated by 102 nucleotides AMB_RS03850: AMB_RS03850 - cytochrome b561, at 810,729 to 811,418 _RS03850 AMB_RS03855: AMB_RS03855 - cytochrome c, at 811,485 to 811,946 _RS03855 AMB_RS03860: AMB_RS03860 - NADPH:quinone oxidoreductase family protein, at 812,049 to 813,020 _RS03860 Position (kb) 811 812Strain fitness (log2 ratio) -3 -2 -1 0 1at 810.514 kb on - strandat 810.522 kb on + strandat 810.931 kb on + strand, within AMB_RS03850at 810.931 kb on + strand, within AMB_RS03850at 810.932 kb on - strand, within AMB_RS03850at 810.970 kb on + strand, within AMB_RS03850at 810.970 kb on + strand, within AMB_RS03850at 810.970 kb on + strand, within AMB_RS03850at 810.971 kb on - strand, within AMB_RS03850at 810.971 kb on - strand, within AMB_RS03850at 810.971 kb on - strand, within AMB_RS03850at 810.971 kb on - strand, within AMB_RS03850at 811.039 kb on + strand, within AMB_RS03850at 811.039 kb on + strand, within AMB_RS03850at 811.040 kb on - strand, within AMB_RS03850at 811.178 kb on - strand, within AMB_RS03850at 811.225 kb on + strand, within AMB_RS03850at 811.225 kb on + strand, within AMB_RS03850at 811.226 kb on - strand, within AMB_RS03850at 811.226 kb on - strand, within AMB_RS03850at 811.486 kb on + strandat 811.486 kb on - strandat 811.487 kb on - strandat 811.487 kb on - strandat 811.711 kb on + strand, within AMB_RS03855at 811.712 kb on - strand, within AMB_RS03855at 811.781 kb on + strand, within AMB_RS03855at 811.781 kb on + strand, within AMB_RS03855at 811.782 kb on - strand, within AMB_RS03855at 811.782 kb on - strand, within AMB_RS03855at 811.783 kb on + strand, within AMB_RS03855at 811.784 kb on - strand, within AMB_RS03855at 811.840 kb on + strand, within AMB_RS03855at 811.999 kb on - strandat 811.999 kb on - strandat 811.999 kb on - strandat 812.002 kb on - strandat 812.002 kb on - strandat 812.002 kb on - strandat 812.004 kb on - strandat 812.113 kb on - strandat 812.240 kb on - strand, within AMB_RS03860at 812.240 kb on - strand, within AMB_RS03860at 812.240 kb on - strand, within AMB_RS03860at 812.242 kb on + strand, within AMB_RS03860at 812.389 kb on + strand, within AMB_RS03860at 812.389 kb on + strand, within AMB_RS03860at 812.390 kb on - strand, within AMB_RS03860at 812.390 kb on - strand, within AMB_RS03860at 812.455 kb on + strand, within AMB_RS03860at 812.455 kb on + strand, within AMB_RS03860at 812.456 kb on - strand, within AMB_RS03860at 812.616 kb on - strand, within AMB_RS03860at 812.616 kb on - strand, within AMB_RS03860at 812.616 kb on - strand, within AMB_RS03860at 812.656 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.711 kb on - strand, within AMB_RS03860at 812.711 kb on - strand, within AMB_RS03860at 812.711 kb on - strand, within AMB_RS03860at 812.711 kb on - strand, within AMB_RS03860at 812.711 kb on - strand, within AMB_RS03860at 812.711 kb on - strand, within AMB_RS03860at 812.711 kb on - strand, within AMB_RS03860at 812.711 kb on - strand, within AMB_RS03860at 812.711 kb on - strand, within AMB_RS03860at 812.875 kb on + strand, within AMB_RS03860at 812.875 kb on + strand, within AMB_RS03860at 812.876 kb on - strand, within AMB_RS03860

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_initial_2
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810,514 - -0.6
810,522 + -0.7
810,931 + AMB_RS03850 0.29 -0.8
810,931 + AMB_RS03850 0.29 -0.3
810,932 - AMB_RS03850 0.29 -2.1
810,970 + AMB_RS03850 0.35 -0.1
810,970 + AMB_RS03850 0.35 -0.9
810,970 + AMB_RS03850 0.35 -0.6
810,971 - AMB_RS03850 0.35 -0.4
810,971 - AMB_RS03850 0.35 -0.2
810,971 - AMB_RS03850 0.35 -0.3
810,971 - AMB_RS03850 0.35 -0.2
811,039 + AMB_RS03850 0.45 -1.9
811,039 + AMB_RS03850 0.45 -0.1
811,040 - AMB_RS03850 0.45 -0.3
811,178 - AMB_RS03850 0.65 -0.4
811,225 + AMB_RS03850 0.72 -0.3
811,225 + AMB_RS03850 0.72 -3.6
811,226 - AMB_RS03850 0.72 +0.6
811,226 - AMB_RS03850 0.72 +0.3
811,486 + -0.5
811,486 - +0.5
811,487 - -0.1
811,487 - +0.5
811,711 + AMB_RS03855 0.49 -0.3
811,712 - AMB_RS03855 0.49 -0.7
811,781 + AMB_RS03855 0.64 -1.8
811,781 + AMB_RS03855 0.64 +0.7
811,782 - AMB_RS03855 0.64 +0.9
811,782 - AMB_RS03855 0.64 +0.2
811,783 + AMB_RS03855 0.65 -0.1
811,784 - AMB_RS03855 0.65 +0.2
811,840 + AMB_RS03855 0.77 -0.6
811,999 - -2.4
811,999 - -0.0
811,999 - -0.2
812,002 - +0.8
812,002 - -0.1
812,002 - -0.1
812,004 - +0.1
812,113 - -0.2
812,240 - AMB_RS03860 0.20 +0.7
812,240 - AMB_RS03860 0.20 -0.1
812,240 - AMB_RS03860 0.20 -0.4
812,242 + AMB_RS03860 0.20 +0.9
812,389 + AMB_RS03860 0.35 +0.3
812,389 + AMB_RS03860 0.35 +0.1
812,390 - AMB_RS03860 0.35 -0.1
812,390 - AMB_RS03860 0.35 -1.4
812,455 + AMB_RS03860 0.42 -1.1
812,455 + AMB_RS03860 0.42 +0.1
812,456 - AMB_RS03860 0.42 -0.1
812,616 - AMB_RS03860 0.58 -0.1
812,616 - AMB_RS03860 0.58 -0.1
812,616 - AMB_RS03860 0.58 -0.1
812,656 + AMB_RS03860 0.62 -0.8
812,710 + AMB_RS03860 0.68 -0.0
812,710 + AMB_RS03860 0.68 -0.4
812,710 + AMB_RS03860 0.68 +0.4
812,710 + AMB_RS03860 0.68 -0.5
812,710 + AMB_RS03860 0.68 -0.7
812,710 + AMB_RS03860 0.68 -0.4
812,710 + AMB_RS03860 0.68 -0.1
812,710 + AMB_RS03860 0.68 -0.2
812,710 + AMB_RS03860 0.68 -1.3
812,710 + AMB_RS03860 0.68 +0.1
812,710 + AMB_RS03860 0.68 +0.3
812,710 + AMB_RS03860 0.68 +0.8
812,711 - AMB_RS03860 0.68 -1.1
812,711 - AMB_RS03860 0.68 +0.0
812,711 - AMB_RS03860 0.68 -0.1
812,711 - AMB_RS03860 0.68 +0.5
812,711 - AMB_RS03860 0.68 -0.0
812,711 - AMB_RS03860 0.68 -0.3
812,711 - AMB_RS03860 0.68 -0.0
812,711 - AMB_RS03860 0.68 +0.4
812,711 - AMB_RS03860 0.68 +0.2
812,875 + AMB_RS03860 0.85 +0.2
812,875 + AMB_RS03860 0.85 -2.9
812,876 - AMB_RS03860 0.85 +0.2

Or see this region's nucleotide sequence