Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03265

Experiment: 30_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03255 and AMB_RS03260 are separated by 15 nucleotidesAMB_RS03260 and AMB_RS03265 are separated by 24 nucleotidesAMB_RS03265 and AMB_RS03270 are separated by 115 nucleotidesAMB_RS03270 and AMB_RS03275 are separated by 503 nucleotides AMB_RS03255: AMB_RS03255 - bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase, at 680,941 to 681,780 _RS03255 AMB_RS03260: AMB_RS03260 - hypothetical protein, at 681,796 to 682,155 _RS03260 AMB_RS03265: AMB_RS03265 - enoyl-CoA hydratase, at 682,180 to 682,956 _RS03265 AMB_RS03270: AMB_RS03270 - 30S ribosomal protein S20, at 683,072 to 683,344 _RS03270 AMB_RS03275: AMB_RS03275 - chromosomal replication initiator protein DnaA, at 683,848 to 685,248 _RS03275 Position (kb) 682 683Strain fitness (log2 ratio) -2 -1 0 1 2at 681.466 kb on + strand, within AMB_RS03255at 681.466 kb on + strand, within AMB_RS03255at 681.466 kb on + strand, within AMB_RS03255at 681.466 kb on + strand, within AMB_RS03255at 681.466 kb on + strand, within AMB_RS03255at 681.466 kb on + strand, within AMB_RS03255at 681.466 kb on + strand, within AMB_RS03255at 681.467 kb on - strand, within AMB_RS03255at 681.467 kb on - strand, within AMB_RS03255at 681.467 kb on - strand, within AMB_RS03255at 681.467 kb on - strand, within AMB_RS03255at 681.467 kb on - strand, within AMB_RS03255at 681.467 kb on - strand, within AMB_RS03255at 681.467 kb on - strand, within AMB_RS03255at 681.467 kb on - strand, within AMB_RS03255at 681.467 kb on - strand, within AMB_RS03255at 681.467 kb on - strand, within AMB_RS03255at 681.467 kb on - strand, within AMB_RS03255at 681.467 kb on - strand, within AMB_RS03255at 681.467 kb on - strand, within AMB_RS03255at 681.467 kb on - strand, within AMB_RS03255at 681.467 kb on - strand, within AMB_RS03255at 681.467 kb on - strand, within AMB_RS03255at 681.467 kb on - strand, within AMB_RS03255at 681.467 kb on - strand, within AMB_RS03255at 681.641 kb on - strand, within AMB_RS03255at 681.664 kb on + strand, within AMB_RS03255at 681.665 kb on - strand, within AMB_RS03255at 681.665 kb on - strand, within AMB_RS03255at 681.665 kb on - strand, within AMB_RS03255at 681.757 kb on + strandat 681.758 kb on - strandat 681.758 kb on - strandat 681.758 kb on - strandat 681.758 kb on - strandat 681.784 kb on + strandat 681.784 kb on + strandat 681.784 kb on + strandat 681.784 kb on + strandat 681.784 kb on + strandat 681.785 kb on - strandat 681.785 kb on - strandat 681.785 kb on - strandat 681.785 kb on - strandat 681.785 kb on - strandat 681.785 kb on - strandat 681.785 kb on - strandat 681.786 kb on + strandat 681.786 kb on + strandat 681.786 kb on + strandat 681.786 kb on + strandat 681.787 kb on - strandat 681.787 kb on - strandat 681.787 kb on - strandat 681.787 kb on - strandat 681.787 kb on - strandat 681.787 kb on - strandat 681.886 kb on + strand, within AMB_RS03260at 681.886 kb on + strand, within AMB_RS03260at 681.977 kb on - strand, within AMB_RS03260at 681.977 kb on - strand, within AMB_RS03260at 681.977 kb on - strand, within AMB_RS03260at 681.977 kb on - strand, within AMB_RS03260at 681.977 kb on - strand, within AMB_RS03260at 681.977 kb on - strand, within AMB_RS03260at 681.977 kb on - strand, within AMB_RS03260at 681.977 kb on - strand, within AMB_RS03260at 682.005 kb on + strand, within AMB_RS03260at 682.018 kb on + strand, within AMB_RS03260at 682.070 kb on - strand, within AMB_RS03260at 682.161 kb on + strandat 682.162 kb on - strandat 682.402 kb on + strand, within AMB_RS03265at 682.402 kb on + strand, within AMB_RS03265at 682.402 kb on + strand, within AMB_RS03265at 682.402 kb on + strand, within AMB_RS03265at 682.402 kb on + strand, within AMB_RS03265at 682.402 kb on + strand, within AMB_RS03265at 682.403 kb on - strand, within AMB_RS03265at 682.403 kb on - strand, within AMB_RS03265at 682.403 kb on - strand, within AMB_RS03265at 682.403 kb on - strand, within AMB_RS03265at 682.403 kb on - strand, within AMB_RS03265at 682.403 kb on - strand, within AMB_RS03265at 682.403 kb on - strand, within AMB_RS03265at 682.403 kb on - strand, within AMB_RS03265at 682.414 kb on + strand, within AMB_RS03265at 682.414 kb on + strand, within AMB_RS03265at 682.414 kb on + strand, within AMB_RS03265at 682.414 kb on + strand, within AMB_RS03265at 682.414 kb on + strand, within AMB_RS03265at 682.414 kb on + strand, within AMB_RS03265at 682.415 kb on - strand, within AMB_RS03265at 682.415 kb on - strand, within AMB_RS03265at 682.415 kb on - strand, within AMB_RS03265at 682.415 kb on - strand, within AMB_RS03265at 682.415 kb on - strand, within AMB_RS03265at 683.025 kb on + strandat 683.342 kb on + strandat 683.356 kb on + strandat 683.356 kb on + strandat 683.356 kb on + strandat 683.357 kb on - strandat 683.359 kb on + strandat 683.676 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_initial_2
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681,466 + AMB_RS03255 0.62 +0.0
681,466 + AMB_RS03255 0.62 -0.1
681,466 + AMB_RS03255 0.62 -0.6
681,466 + AMB_RS03255 0.62 -0.1
681,466 + AMB_RS03255 0.62 -0.7
681,466 + AMB_RS03255 0.62 +0.1
681,466 + AMB_RS03255 0.62 -0.4
681,467 - AMB_RS03255 0.63 +0.5
681,467 - AMB_RS03255 0.63 -0.2
681,467 - AMB_RS03255 0.63 +0.9
681,467 - AMB_RS03255 0.63 +0.3
681,467 - AMB_RS03255 0.63 -0.6
681,467 - AMB_RS03255 0.63 -0.3
681,467 - AMB_RS03255 0.63 +0.1
681,467 - AMB_RS03255 0.63 -0.7
681,467 - AMB_RS03255 0.63 -0.0
681,467 - AMB_RS03255 0.63 -0.4
681,467 - AMB_RS03255 0.63 -0.1
681,467 - AMB_RS03255 0.63 -0.5
681,467 - AMB_RS03255 0.63 +0.1
681,467 - AMB_RS03255 0.63 -0.0
681,467 - AMB_RS03255 0.63 -0.7
681,467 - AMB_RS03255 0.63 +1.7
681,467 - AMB_RS03255 0.63 -0.9
681,467 - AMB_RS03255 0.63 -0.1
681,641 - AMB_RS03255 0.83 -1.4
681,664 + AMB_RS03255 0.86 -1.0
681,665 - AMB_RS03255 0.86 -0.4
681,665 - AMB_RS03255 0.86 -0.5
681,665 - AMB_RS03255 0.86 -0.7
681,757 + +0.9
681,758 - -0.2
681,758 - +0.6
681,758 - -0.3
681,758 - +0.2
681,784 + +0.5
681,784 + -0.4
681,784 + -0.3
681,784 + -0.1
681,784 + +1.9
681,785 - +0.5
681,785 - -0.3
681,785 - -0.5
681,785 - -0.8
681,785 - +0.0
681,785 - -0.1
681,785 - +2.4
681,786 + +0.2
681,786 + -0.9
681,786 + +0.2
681,786 + -0.1
681,787 - -0.8
681,787 - -0.3
681,787 - +0.8
681,787 - -0.6
681,787 - -0.3
681,787 - -0.4
681,886 + AMB_RS03260 0.25 -1.2
681,886 + AMB_RS03260 0.25 -0.3
681,977 - AMB_RS03260 0.50 -0.5
681,977 - AMB_RS03260 0.50 +0.4
681,977 - AMB_RS03260 0.50 +0.0
681,977 - AMB_RS03260 0.50 +0.4
681,977 - AMB_RS03260 0.50 +0.5
681,977 - AMB_RS03260 0.50 -1.4
681,977 - AMB_RS03260 0.50 -0.1
681,977 - AMB_RS03260 0.50 -0.0
682,005 + AMB_RS03260 0.58 +0.1
682,018 + AMB_RS03260 0.62 -0.0
682,070 - AMB_RS03260 0.76 -0.2
682,161 + -0.6
682,162 - -0.6
682,402 + AMB_RS03265 0.29 +0.0
682,402 + AMB_RS03265 0.29 -0.1
682,402 + AMB_RS03265 0.29 +0.1
682,402 + AMB_RS03265 0.29 -0.4
682,402 + AMB_RS03265 0.29 +0.9
682,402 + AMB_RS03265 0.29 +0.0
682,403 - AMB_RS03265 0.29 -0.4
682,403 - AMB_RS03265 0.29 -1.4
682,403 - AMB_RS03265 0.29 +0.4
682,403 - AMB_RS03265 0.29 +0.2
682,403 - AMB_RS03265 0.29 -0.0
682,403 - AMB_RS03265 0.29 -0.1
682,403 - AMB_RS03265 0.29 +0.1
682,403 - AMB_RS03265 0.29 -0.5
682,414 + AMB_RS03265 0.30 -1.2
682,414 + AMB_RS03265 0.30 -0.5
682,414 + AMB_RS03265 0.30 -0.4
682,414 + AMB_RS03265 0.30 -0.9
682,414 + AMB_RS03265 0.30 -1.2
682,414 + AMB_RS03265 0.30 +1.2
682,415 - AMB_RS03265 0.30 -0.2
682,415 - AMB_RS03265 0.30 -0.2
682,415 - AMB_RS03265 0.30 -0.1
682,415 - AMB_RS03265 0.30 -0.1
682,415 - AMB_RS03265 0.30 -0.3
683,025 + -0.2
683,342 + +0.2
683,356 + -1.8
683,356 + -0.6
683,356 + -0.6
683,357 - -0.9
683,359 + -0.5
683,676 + -0.1

Or see this region's nucleotide sequence