Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02540

Experiment: 30_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02530 and AMB_RS02535 overlap by 1 nucleotidesAMB_RS02535 and AMB_RS02540 are separated by 181 nucleotidesAMB_RS02540 and AMB_RS02545 are separated by 104 nucleotides AMB_RS02530: AMB_RS02530 - U32 family peptidase, at 523,295 to 524,326 _RS02530 AMB_RS02535: AMB_RS02535 - lipid carrier protein, at 524,326 to 525,006 _RS02535 AMB_RS02540: AMB_RS02540 - two-component system response regulator, at 525,188 to 526,174 _RS02540 AMB_RS02545: AMB_RS02545 - hypothetical protein, at 526,279 to 527,778 _RS02545 Position (kb) 525 526 527Strain fitness (log2 ratio) -2 -1 0 1at 524.202 kb on + strand, within AMB_RS02530at 524.202 kb on + strand, within AMB_RS02530at 524.202 kb on + strand, within AMB_RS02530at 524.203 kb on - strand, within AMB_RS02530at 524.203 kb on - strand, within AMB_RS02530at 524.203 kb on - strand, within AMB_RS02530at 524.203 kb on - strand, within AMB_RS02530at 524.389 kb on + strandat 524.389 kb on + strandat 524.389 kb on + strandat 524.829 kb on - strand, within AMB_RS02535at 525.055 kb on + strandat 525.055 kb on + strandat 525.170 kb on - strandat 525.170 kb on - strandat 525.170 kb on - strandat 525.170 kb on - strandat 525.194 kb on - strandat 525.194 kb on - strandat 525.597 kb on + strand, within AMB_RS02540at 525.597 kb on + strand, within AMB_RS02540at 525.598 kb on - strand, within AMB_RS02540at 525.598 kb on - strand, within AMB_RS02540at 525.860 kb on + strand, within AMB_RS02540at 525.860 kb on + strand, within AMB_RS02540at 525.860 kb on + strand, within AMB_RS02540at 525.860 kb on + strand, within AMB_RS02540at 525.860 kb on + strand, within AMB_RS02540at 525.860 kb on + strand, within AMB_RS02540at 525.860 kb on + strand, within AMB_RS02540at 525.861 kb on - strand, within AMB_RS02540at 526.100 kb on + strandat 526.101 kb on - strandat 526.101 kb on - strandat 526.101 kb on - strandat 526.172 kb on + strandat 526.173 kb on - strandat 526.346 kb on + strandat 526.346 kb on + strandat 526.347 kb on - strandat 526.347 kb on - strandat 526.400 kb on + strandat 526.400 kb on + strandat 526.400 kb on + strandat 526.400 kb on + strandat 526.400 kb on + strandat 526.400 kb on + strandat 526.401 kb on - strandat 526.473 kb on - strand, within AMB_RS02545at 526.502 kb on + strand, within AMB_RS02545at 526.502 kb on + strand, within AMB_RS02545at 526.503 kb on - strand, within AMB_RS02545at 526.503 kb on - strand, within AMB_RS02545at 526.538 kb on + strand, within AMB_RS02545at 526.538 kb on + strand, within AMB_RS02545at 526.538 kb on + strand, within AMB_RS02545at 526.538 kb on + strand, within AMB_RS02545at 526.538 kb on + strand, within AMB_RS02545at 526.538 kb on + strand, within AMB_RS02545at 526.539 kb on - strand, within AMB_RS02545at 526.539 kb on - strand, within AMB_RS02545at 526.539 kb on - strand, within AMB_RS02545at 526.539 kb on - strand, within AMB_RS02545at 526.539 kb on - strand, within AMB_RS02545at 526.553 kb on + strand, within AMB_RS02545at 526.553 kb on + strand, within AMB_RS02545at 526.553 kb on + strand, within AMB_RS02545at 526.553 kb on + strand, within AMB_RS02545at 526.554 kb on - strand, within AMB_RS02545at 526.554 kb on - strand, within AMB_RS02545at 526.554 kb on - strand, within AMB_RS02545at 526.554 kb on - strand, within AMB_RS02545at 526.588 kb on + strand, within AMB_RS02545at 526.588 kb on + strand, within AMB_RS02545at 526.588 kb on + strand, within AMB_RS02545at 526.739 kb on + strand, within AMB_RS02545at 526.739 kb on + strand, within AMB_RS02545at 526.740 kb on - strand, within AMB_RS02545at 526.740 kb on - strand, within AMB_RS02545

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_initial_2
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524,202 + AMB_RS02530 0.88 -0.7
524,202 + AMB_RS02530 0.88 +0.2
524,202 + AMB_RS02530 0.88 -0.3
524,203 - AMB_RS02530 0.88 -1.4
524,203 - AMB_RS02530 0.88 -1.0
524,203 - AMB_RS02530 0.88 -0.3
524,203 - AMB_RS02530 0.88 -0.4
524,389 + -1.9
524,389 + -0.4
524,389 + -0.4
524,829 - AMB_RS02535 0.74 -1.0
525,055 + -0.4
525,055 + -0.0
525,170 - -0.1
525,170 - +0.3
525,170 - -0.4
525,170 - -0.0
525,194 - -0.2
525,194 - +0.3
525,597 + AMB_RS02540 0.41 -0.2
525,597 + AMB_RS02540 0.41 -0.2
525,598 - AMB_RS02540 0.42 -0.4
525,598 - AMB_RS02540 0.42 -1.2
525,860 + AMB_RS02540 0.68 +0.2
525,860 + AMB_RS02540 0.68 -0.1
525,860 + AMB_RS02540 0.68 -0.0
525,860 + AMB_RS02540 0.68 -0.7
525,860 + AMB_RS02540 0.68 -0.1
525,860 + AMB_RS02540 0.68 +1.4
525,860 + AMB_RS02540 0.68 -1.2
525,861 - AMB_RS02540 0.68 +1.0
526,100 + -1.1
526,101 - -0.0
526,101 - -0.8
526,101 - -1.0
526,172 + +0.1
526,173 - -0.5
526,346 + +0.0
526,346 + +0.2
526,347 - +0.1
526,347 - -0.2
526,400 + +0.4
526,400 + +1.6
526,400 + +0.1
526,400 + -0.6
526,400 + +0.6
526,400 + -0.4
526,401 - -0.2
526,473 - AMB_RS02545 0.13 -0.3
526,502 + AMB_RS02545 0.15 -0.2
526,502 + AMB_RS02545 0.15 -0.2
526,503 - AMB_RS02545 0.15 +0.1
526,503 - AMB_RS02545 0.15 -0.1
526,538 + AMB_RS02545 0.17 -0.7
526,538 + AMB_RS02545 0.17 +0.2
526,538 + AMB_RS02545 0.17 -0.0
526,538 + AMB_RS02545 0.17 -0.4
526,538 + AMB_RS02545 0.17 +0.6
526,538 + AMB_RS02545 0.17 +0.4
526,539 - AMB_RS02545 0.17 -0.0
526,539 - AMB_RS02545 0.17 -0.0
526,539 - AMB_RS02545 0.17 +0.4
526,539 - AMB_RS02545 0.17 +0.2
526,539 - AMB_RS02545 0.17 -0.2
526,553 + AMB_RS02545 0.18 +0.2
526,553 + AMB_RS02545 0.18 -0.6
526,553 + AMB_RS02545 0.18 +0.1
526,553 + AMB_RS02545 0.18 +0.1
526,554 - AMB_RS02545 0.18 -0.4
526,554 - AMB_RS02545 0.18 -0.1
526,554 - AMB_RS02545 0.18 +0.6
526,554 - AMB_RS02545 0.18 -0.3
526,588 + AMB_RS02545 0.21 +0.2
526,588 + AMB_RS02545 0.21 -0.6
526,588 + AMB_RS02545 0.21 +0.2
526,739 + AMB_RS02545 0.31 -0.1
526,739 + AMB_RS02545 0.31 -0.4
526,740 - AMB_RS02545 0.31 -0.4
526,740 - AMB_RS02545 0.31 +0.6

Or see this region's nucleotide sequence