Experiment: 30_initial_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02485 and AMB_RS23890 are separated by 185 nucleotides
AMB_RS02485: AMB_RS02485 - hypothetical protein, at 516,816 to 517,175
_RS02485
AMB_RS23890: AMB_RS23890 - hypothetical protein, at 517,361 to 518,557
_RS23890
Position (kb) 516
517
518 Strain fitness (log2 ratio) -2
-1
0
1
2 at 515.940 kb on + strand at 515.940 kb on + strand at 516.011 kb on + strand at 516.012 kb on - strand at 516.012 kb on - strand at 516.019 kb on + strand at 516.019 kb on + strand at 516.019 kb on + strand at 516.020 kb on - strand at 516.020 kb on - strand at 516.020 kb on - strand at 516.020 kb on - strand at 516.192 kb on + strand at 516.213 kb on - strand at 516.213 kb on - strand at 516.242 kb on + strand at 516.243 kb on - strand at 516.402 kb on + strand at 516.495 kb on + strand at 516.495 kb on + strand at 516.500 kb on + strand at 516.500 kb on + strand at 516.501 kb on - strand at 516.501 kb on - strand at 516.604 kb on + strand at 516.644 kb on + strand at 516.668 kb on + strand at 516.684 kb on - strand at 516.700 kb on + strand at 516.858 kb on - strand, within AMB_RS02485 at 516.984 kb on + strand, within AMB_RS02485 at 516.985 kb on - strand, within AMB_RS02485 at 516.985 kb on - strand, within AMB_RS02485 at 517.291 kb on - strand at 517.308 kb on + strand at 517.309 kb on - strand at 517.437 kb on - strand at 517.437 kb on - strand at 517.509 kb on + strand, within AMB_RS23890 at 517.509 kb on + strand, within AMB_RS23890 at 517.883 kb on - strand, within AMB_RS23890 at 517.990 kb on + strand, within AMB_RS23890 at 518.081 kb on - strand, within AMB_RS23890
Per-strain Table
Position Strand Gene LocusTag Fraction 30_initial_2 remove 515,940 + -1.2 515,940 + -0.5 516,011 + -0.9 516,012 - -1.0 516,012 - -0.2 516,019 + +0.5 516,019 + -0.8 516,019 + -1.3 516,020 - -0.9 516,020 - +0.6 516,020 - -0.2 516,020 - -0.3 516,192 + -0.3 516,213 - -0.7 516,213 - +0.1 516,242 + -0.2 516,243 - -0.3 516,402 + -1.6 516,495 + -0.2 516,495 + -0.4 516,500 + +2.6 516,500 + -0.4 516,501 - -0.6 516,501 - -1.3 516,604 + +0.7 516,644 + -0.2 516,668 + -0.7 516,684 - -0.3 516,700 + +0.3 516,858 - AMB_RS02485 0.12 -2.3 516,984 + AMB_RS02485 0.47 -0.2 516,985 - AMB_RS02485 0.47 -1.6 516,985 - AMB_RS02485 0.47 -0.3 517,291 - +0.2 517,308 + -0.4 517,309 - +0.5 517,437 - +0.3 517,437 - -1.3 517,509 + AMB_RS23890 0.12 -2.1 517,509 + AMB_RS23890 0.12 -0.2 517,883 - AMB_RS23890 0.44 -0.2 517,990 + AMB_RS23890 0.53 -0.0 518,081 - AMB_RS23890 0.60 -0.3
Or see this region's nucleotide sequence