Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02430

Experiment: 30_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02410 and AMB_RS02415 overlap by 8 nucleotidesAMB_RS02415 and AMB_RS02420 are separated by 27 nucleotidesAMB_RS02420 and AMB_RS02425 overlap by 4 nucleotidesAMB_RS02425 and AMB_RS02430 are separated by 3 nucleotidesAMB_RS02430 and AMB_RS02435 overlap by 4 nucleotidesAMB_RS02435 and AMB_RS23135 are separated by 2 nucleotides AMB_RS02410: AMB_RS02410 - hypothetical protein, at 502,910 to 503,128 _RS02410 AMB_RS02415: AMB_RS02415 - DnaK suppressor protein, at 503,121 to 503,345 _RS02415 AMB_RS02420: AMB_RS02420 - hypothetical protein, at 503,373 to 503,768 _RS02420 AMB_RS02425: AMB_RS02425 - hypothetical protein, at 503,765 to 504,091 _RS02425 AMB_RS02430: AMB_RS02430 - DUF3486 domain-containing protein, at 504,095 to 504,712 _RS02430 AMB_RS02435: AMB_RS02435 - hypothetical protein, at 504,709 to 505,185 _RS02435 AMB_RS23135: AMB_RS23135 - DUF2163 domain-containing protein, at 505,188 to 506,078 _RS23135 Position (kb) 504 505Strain fitness (log2 ratio) -2 -1 0 1 2at 503.224 kb on - strand, within AMB_RS02415at 503.224 kb on - strand, within AMB_RS02415at 503.370 kb on + strandat 503.370 kb on + strandat 503.370 kb on + strandat 503.370 kb on + strandat 503.370 kb on + strandat 503.370 kb on + strandat 503.370 kb on + strandat 503.370 kb on + strandat 503.371 kb on - strandat 503.371 kb on - strandat 503.371 kb on - strandat 503.371 kb on - strandat 503.371 kb on - strandat 503.782 kb on + strandat 503.850 kb on - strand, within AMB_RS02425at 503.850 kb on - strand, within AMB_RS02425at 503.850 kb on - strand, within AMB_RS02425at 503.850 kb on - strand, within AMB_RS02425at 503.929 kb on + strand, within AMB_RS02425at 503.929 kb on + strand, within AMB_RS02425at 503.929 kb on + strand, within AMB_RS02425at 503.930 kb on - strand, within AMB_RS02425at 503.930 kb on - strand, within AMB_RS02425at 503.930 kb on - strand, within AMB_RS02425at 503.930 kb on - strand, within AMB_RS02425at 503.930 kb on - strand, within AMB_RS02425at 504.089 kb on + strandat 504.173 kb on + strand, within AMB_RS02430at 504.174 kb on - strand, within AMB_RS02430at 504.174 kb on - strand, within AMB_RS02430at 504.174 kb on - strand, within AMB_RS02430at 504.174 kb on - strand, within AMB_RS02430at 504.174 kb on - strand, within AMB_RS02430at 504.433 kb on + strand, within AMB_RS02430at 504.692 kb on + strandat 504.692 kb on + strandat 504.949 kb on + strand, within AMB_RS02435at 504.949 kb on + strand, within AMB_RS02435at 504.950 kb on - strand, within AMB_RS02435at 504.950 kb on - strand, within AMB_RS02435at 504.980 kb on - strand, within AMB_RS02435at 504.980 kb on - strand, within AMB_RS02435at 504.980 kb on - strand, within AMB_RS02435at 504.980 kb on - strand, within AMB_RS02435at 504.980 kb on - strand, within AMB_RS02435at 504.980 kb on - strand, within AMB_RS02435at 505.015 kb on + strand, within AMB_RS02435at 505.016 kb on - strand, within AMB_RS02435at 505.016 kb on - strand, within AMB_RS02435at 505.016 kb on - strand, within AMB_RS02435at 505.016 kb on - strand, within AMB_RS02435at 505.016 kb on - strand, within AMB_RS02435at 505.084 kb on + strand, within AMB_RS02435at 505.084 kb on + strand, within AMB_RS02435at 505.085 kb on - strand, within AMB_RS02435at 505.085 kb on - strand, within AMB_RS02435at 505.087 kb on + strand, within AMB_RS02435at 505.087 kb on + strand, within AMB_RS02435at 505.087 kb on + strand, within AMB_RS02435at 505.088 kb on - strand, within AMB_RS02435at 505.088 kb on - strand, within AMB_RS02435at 505.088 kb on - strand, within AMB_RS02435at 505.183 kb on + strandat 505.183 kb on + strandat 505.183 kb on + strandat 505.184 kb on - strandat 505.184 kb on - strandat 505.184 kb on - strandat 505.254 kb on + strandat 505.254 kb on + strandat 505.291 kb on - strand, within AMB_RS23135at 505.359 kb on + strand, within AMB_RS23135at 505.530 kb on + strand, within AMB_RS23135at 505.530 kb on + strand, within AMB_RS23135at 505.530 kb on + strand, within AMB_RS23135at 505.530 kb on + strand, within AMB_RS23135at 505.530 kb on + strand, within AMB_RS23135at 505.531 kb on - strand, within AMB_RS23135at 505.531 kb on - strand, within AMB_RS23135at 505.531 kb on - strand, within AMB_RS23135at 505.696 kb on - strand, within AMB_RS23135

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_initial_2
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503,224 - AMB_RS02415 0.46 +0.6
503,224 - AMB_RS02415 0.46 -0.4
503,370 + -0.3
503,370 + +1.7
503,370 + +0.4
503,370 + -0.9
503,370 + -0.1
503,370 + -0.4
503,370 + +2.1
503,370 + -2.0
503,371 - -2.3
503,371 - +0.1
503,371 - +0.2
503,371 - -0.1
503,371 - +2.6
503,782 + -0.6
503,850 - AMB_RS02425 0.26 -0.4
503,850 - AMB_RS02425 0.26 +0.9
503,850 - AMB_RS02425 0.26 -0.2
503,850 - AMB_RS02425 0.26 -0.3
503,929 + AMB_RS02425 0.50 +0.3
503,929 + AMB_RS02425 0.50 -0.1
503,929 + AMB_RS02425 0.50 -0.2
503,930 - AMB_RS02425 0.50 +0.3
503,930 - AMB_RS02425 0.50 -0.2
503,930 - AMB_RS02425 0.50 -0.0
503,930 - AMB_RS02425 0.50 -0.6
503,930 - AMB_RS02425 0.50 -0.0
504,089 + -1.2
504,173 + AMB_RS02430 0.13 +0.5
504,174 - AMB_RS02430 0.13 -0.0
504,174 - AMB_RS02430 0.13 +2.6
504,174 - AMB_RS02430 0.13 -0.2
504,174 - AMB_RS02430 0.13 +0.2
504,174 - AMB_RS02430 0.13 +0.1
504,433 + AMB_RS02430 0.55 -0.5
504,692 + +0.2
504,692 + -0.8
504,949 + AMB_RS02435 0.50 -0.9
504,949 + AMB_RS02435 0.50 +0.6
504,950 - AMB_RS02435 0.51 -0.4
504,950 - AMB_RS02435 0.51 +0.5
504,980 - AMB_RS02435 0.57 -0.5
504,980 - AMB_RS02435 0.57 +0.6
504,980 - AMB_RS02435 0.57 +0.6
504,980 - AMB_RS02435 0.57 -2.3
504,980 - AMB_RS02435 0.57 +0.6
504,980 - AMB_RS02435 0.57 +0.2
505,015 + AMB_RS02435 0.64 +0.6
505,016 - AMB_RS02435 0.64 -1.2
505,016 - AMB_RS02435 0.64 -0.9
505,016 - AMB_RS02435 0.64 -0.5
505,016 - AMB_RS02435 0.64 -1.2
505,016 - AMB_RS02435 0.64 -0.4
505,084 + AMB_RS02435 0.79 +0.1
505,084 + AMB_RS02435 0.79 -1.0
505,085 - AMB_RS02435 0.79 +0.5
505,085 - AMB_RS02435 0.79 +0.2
505,087 + AMB_RS02435 0.79 -0.8
505,087 + AMB_RS02435 0.79 +2.0
505,087 + AMB_RS02435 0.79 -0.0
505,088 - AMB_RS02435 0.79 -0.4
505,088 - AMB_RS02435 0.79 -0.1
505,088 - AMB_RS02435 0.79 +0.1
505,183 + -0.4
505,183 + +0.9
505,183 + -0.0
505,184 - -0.2
505,184 - -0.4
505,184 - -2.6
505,254 + -0.2
505,254 + +0.1
505,291 - AMB_RS23135 0.12 +0.2
505,359 + AMB_RS23135 0.19 -0.8
505,530 + AMB_RS23135 0.38 +0.1
505,530 + AMB_RS23135 0.38 -0.3
505,530 + AMB_RS23135 0.38 +0.5
505,530 + AMB_RS23135 0.38 -0.1
505,530 + AMB_RS23135 0.38 -0.3
505,531 - AMB_RS23135 0.38 -0.1
505,531 - AMB_RS23135 0.38 +0.1
505,531 - AMB_RS23135 0.38 -1.8
505,696 - AMB_RS23135 0.57 -0.0

Or see this region's nucleotide sequence