Experiment: 30_initial_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02235 and AMB_RS02240 are separated by 277 nucleotides AMB_RS02240 and AMB_RS02245 are separated by 23 nucleotides AMB_RS02245 and AMB_RS02250 are separated by 148 nucleotides
AMB_RS02235: AMB_RS02235 - methyltransferase domain-containing protein, at 473,556 to 474,515
_RS02235
AMB_RS02240: AMB_RS02240 - surface lipoprotein, at 474,793 to 475,605
_RS02240
AMB_RS02245: AMB_RS02245 - ABC transporter, at 475,629 to 476,270
_RS02245
AMB_RS02250: AMB_RS02250 - hypothetical protein, at 476,419 to 480,750
_RS02250
Position (kb) 474
475
476 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 473.840 kb on - strand, within AMB_RS02235 at 473.845 kb on - strand, within AMB_RS02235 at 473.845 kb on - strand, within AMB_RS02235 at 473.845 kb on - strand, within AMB_RS02235 at 473.845 kb on - strand, within AMB_RS02235 at 473.845 kb on - strand, within AMB_RS02235 at 473.845 kb on - strand, within AMB_RS02235 at 473.845 kb on - strand, within AMB_RS02235 at 474.173 kb on - strand, within AMB_RS02235 at 474.314 kb on - strand, within AMB_RS02235 at 474.314 kb on - strand, within AMB_RS02235 at 474.314 kb on - strand, within AMB_RS02235 at 474.314 kb on - strand, within AMB_RS02235 at 474.615 kb on + strand at 474.696 kb on + strand at 474.769 kb on + strand at 474.769 kb on + strand at 474.774 kb on + strand at 475.465 kb on + strand, within AMB_RS02240 at 475.465 kb on + strand, within AMB_RS02240 at 475.465 kb on + strand, within AMB_RS02240 at 475.613 kb on + strand at 475.613 kb on + strand at 475.613 kb on + strand at 475.613 kb on + strand at 475.613 kb on + strand at 475.613 kb on + strand at 475.613 kb on + strand at 476.303 kb on - strand at 476.420 kb on + strand at 476.420 kb on + strand at 476.420 kb on + strand at 476.421 kb on - strand at 476.431 kb on + strand at 476.431 kb on + strand at 476.431 kb on + strand at 476.432 kb on - strand at 476.432 kb on - strand at 476.432 kb on - strand at 476.432 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_initial_2 remove 473,840 - AMB_RS02235 0.30 +0.2 473,845 - AMB_RS02235 0.30 -0.3 473,845 - AMB_RS02235 0.30 +0.1 473,845 - AMB_RS02235 0.30 +0.0 473,845 - AMB_RS02235 0.30 -0.4 473,845 - AMB_RS02235 0.30 +0.3 473,845 - AMB_RS02235 0.30 -0.1 473,845 - AMB_RS02235 0.30 -0.3 474,173 - AMB_RS02235 0.64 -0.6 474,314 - AMB_RS02235 0.79 +0.8 474,314 - AMB_RS02235 0.79 +0.4 474,314 - AMB_RS02235 0.79 -0.3 474,314 - AMB_RS02235 0.79 +0.6 474,615 + -0.4 474,696 + +0.9 474,769 + +0.1 474,769 + +0.6 474,774 + +0.7 475,465 + AMB_RS02240 0.83 -2.0 475,465 + AMB_RS02240 0.83 -0.9 475,465 + AMB_RS02240 0.83 -0.0 475,613 + -0.6 475,613 + -0.6 475,613 + +0.3 475,613 + -1.5 475,613 + -0.3 475,613 + +0.1 475,613 + -1.2 476,303 - -0.1 476,420 + +3.0 476,420 + -0.1 476,420 + -0.3 476,421 - -1.2 476,431 + -0.3 476,431 + +0.5 476,431 + -0.0 476,432 - -0.2 476,432 - +0.9 476,432 - +0.1 476,432 - -0.1
Or see this region's nucleotide sequence